mRNA_P-wetherbeei_contig12715.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12715.1.1
Unique NamemRNA_P-wetherbeei_contig12715.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: A0A354T5P6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A354T5P6_9BACT)

HSP 1 Score: 180 bits (457), Expect = 1.480e-56
Identity = 87/113 (76.99%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    7 MPKIALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAIAR 345
            M +IALIGTAGR   YPL  ELW+AMT DV  WI P DVL+SGGAAWADHLAVHA+L+GWCAGL LYLPAPL GGRFAGPFKSAGSTANYYHQRFS VI ED+L QV  AI +
Sbjct:    1 MARIALIGTAGRDKNYPLTRELWDAMTGDVGVWINPEDVLISGGAAWADHLAVHAWLKGWCAGLELYLPAPLEGGRFAGPFKSAGSTANYYHQRFSGVIGEDTLAQVAHAIEK 113          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: UPI0018D0C8FF (hypothetical protein n=1 Tax=Achromobacter sp. 2789STDY5608633 TaxID=1806501 RepID=UPI0018D0C8FF)

HSP 1 Score: 124 bits (310), Expect = 2.280e-33
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   67 ELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFEP 369
            ELW AMT D+   +   D LVSGGAAWADHLAVHAYL GW   L LYLPAP   G F GP KSA S AN+YH+RFSA I ++S  Q+  AI RGA+ E+EP
Sbjct:    4 ELWLAMTTDLRGRVGRKDRLVSGGAAWADHLAVHAYLNGWVDQLTLYLPAPFERGTFLGPTKSAASAANFYHERFSAAIGDNSRQQIALAITRGAQTEYEP 104          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: A0A240UJG8_9BURK (DNA helicase n=1 Tax=Acidovorax carolinensis TaxID=553814 RepID=A0A240UJG8_9BURK)

HSP 1 Score: 118 bits (295), Expect = 2.310e-28
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   13 KIALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFK-SAGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFEP 369
            ++A+IGTAGR  A+ +   LW+AM +D  S + P D LVSGGAAWADHLAV  +L G    L L+ PAPL GG FAGP + SAGS ANYYH  F      D L ++++AIA GA    +P
Sbjct:  871 RMAIIGTAGRDKAHEMDRALWDAMLSDARSRVLPTDTLVSGGAAWADHLAVRLFLDGAVQHLELHFPAPLEGGAFAGPARDSAGSAANYYHSMFQKATGIDGLREIEQAIAAGASTTAQP 990          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: UPI001485BDE7 (UvrD-helicase domain-containing protein n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI001485BDE7)

HSP 1 Score: 115 bits (288), Expect = 2.030e-27
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   13 KIALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFEP 369
            +IA+IGTAGR  +  +   LW+AM AD+ S + P D+LVSGGAAWADHLAVH YLQG   GL L+LPAP    +F GP +S+ + ANYYHQRF      +SL ++  A+    +V  EP
Sbjct:  847 RIAVIGTAGRDKSETMNRVLWDAMVADLRSRVGPDDILVSGGAAWADHLAVHVYLQGHVKGLELHLPAPFDDIQFQGPGQSSATAANYYHQRFHQATGINSLEELHCALMCEIQVTTEP 965          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: A0A2E4R455_9BURK (Uncharacterized protein n=2 Tax=Pusillimonas (ex Stolz et al. 2005) TaxID=305976 RepID=A0A2E4R455_9BURK)

HSP 1 Score: 108 bits (271), Expect = 3.270e-27
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   16 IALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAI-ARGAKVEFEPV 372
            +A+IGTAGR    P+  +LW AM  D+   I P D LVSGGAAWADHLAVHA+ +GW   L L+LPAP+    F GP +SA + AN Y ++FSA+    S  Q++  + A G  V  EP+
Sbjct:   12 LAVIGTAGRDKTQPMDXDLWYAMCDDLRERISPNDHLVSGGAAWADHLAVHAFDKGWVKQLTLFLPAPMGXAGFIGPQRSAANAANXYXRKFSAITRIRSXAQLRXVVRAPGVTVYEEPI 131          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: A0A522FGJ1_9BURK (Uncharacterized protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=A0A522FGJ1_9BURK)

HSP 1 Score: 108 bits (269), Expect = 7.530e-27
Identity = 63/129 (48.84%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 IAMPKIALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLV----GGRFA--GPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFEP 369
            +++  +A+IGTAGR     +   LW AM  D    +   D LVSGGAAWADHLAV A+L   C G+ LYLPAPLV    G RF   GP +S+G  ANYYH+RFSA + +D+  Q+ EA   GA +  EP
Sbjct:    1 MSLRTLAVIGTAGRDKTKIMDRSLWNAMFEDFIDRVRSDDTLVSGGAAWADHLAVQAFLILRCQGIRLYLPAPLVKTEKGWRFQELGP-RSSGGAANYYHERFSAALRQDTRAQIAEAAKYGAVINAEP 128          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: A0A023WYM3_PSEST (Uncharacterized protein n=7 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A023WYM3_PSEST)

HSP 1 Score: 104 bits (259), Expect = 1.140e-25
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   16 IALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFE 366
            IA+IGTAGR   +P+    WE +   V  ++ PGD LVSGGAAWADH AV A+ +G  A L L+LPAP     F+G   ++G  AN+YH++FS  I  D+L  +QEAI  GA+  ++
Sbjct:   12 IAVIGTAGRDKQFPMDISHWEFICRAVRFYVRPGDHLVSGGAAWADHAAVWAFNEGLSASLTLHLPAPFEAS-FSGGNGTSGGAANHYHRQFSRAIRRDTLADIQEAILGGAQCTYQ 127          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: H1KQE8_METEX (Uncharacterized protein n=2 Tax=Methylorubrum extorquens TaxID=408 RepID=H1KQE8_METEX)

HSP 1 Score: 87.0 bits (214), Expect = 1.010e-18
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   16 IALIGTAGRSA-AYPLIPELWEAMTADVNSWIEPGDV--LVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKS-AGSTANYYHQRFSAVIAEDSLGQVQEAIARGA 351
            +A+IGTAGR   A  L  EL++AM A     +    +  LVSGGAAWADHLAV A+L+G    L L+LPA    GRF G   +    TAN YH  FS ++  D+LGQV +AI RGA
Sbjct:    2 LAVIGTAGRGTDADRLSAELYDAMYARTLDAMRTWGIRSLVSGGAAWADHLAVRAFLEGEADALRLFLPARFERGRFGGTAPNDVARTANRYHDAFSRMLGIDTLGQVAKAIDRGA 117          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: UPI001CE42915 (hypothetical protein n=1 Tax=Xenophilus sp. Marseille-Q4582 TaxID=2866600 RepID=UPI001CE42915)

HSP 1 Score: 86.3 bits (212), Expect = 1.120e-18
Identity = 51/109 (46.79%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   16 IALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPL--VGGRFAGPFKSAGSTANYYHQRFSAVIAEDSLGQVQEA 336
            IA+IGTAGR    PL    W+ M A     I  G  +VSGGAAWADH+AV     G    L L+LPAP+      F G  KSAGS ANYYH +FS  + ED+  ++ +A
Sbjct:    5 IAIIGTAGRGT--PLTKAHWDFMVATALEVIPAGRHVVSGGAAWADHVAVRLLTLGHAGALTLHLPAPMDETDFSFVGVRKSAGSAANYYHHQFSQALGEDTRAELFDA 111          
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Match: UPI001EDECFBE (hypothetical protein n=1 Tax=Methylobacterium hispanicum TaxID=270350 RepID=UPI001EDECFBE)

HSP 1 Score: 86.7 bits (213), Expect = 1.420e-18
Identity = 57/122 (46.72%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   16 IALIGTAGRSA-AYPLIPELWEAMTADVNSWIEPGDV--LVSGGAAWADHLAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKS-AGSTANYYHQRFSAVIAEDSLGQVQEAIARGAKVEFEP 369
            +A+IGTAGR   A  L   L++AM A     +    +  LVSGGAAWADHLAV A+L+G  A L L+LPA    GRF G   +    TAN YH  FS  +  D+L Q+ EAI RGA     P
Sbjct:    2 LAVIGTAGRGTDADRLSVGLYDAMYARAVETMRDWGIRALVSGGAAWADHLAVRAFLEGEAASLRLFLPARFEHGRFGGSAPNDVARTANRYHDAFSRAVGVDTLAQLAEAIDRGAAASVHP 123          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12715.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354T5P6_9BACT1.480e-5676.99Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
UPI0018D0C8FF2.280e-3361.39hypothetical protein n=1 Tax=Achromobacter sp. 278... [more]
A0A240UJG8_9BURK2.310e-2851.67DNA helicase n=1 Tax=Acidovorax carolinensis TaxID... [more]
UPI001485BDE72.030e-2751.26UvrD-helicase domain-containing protein n=1 Tax=Hy... [more]
A0A2E4R455_9BURK3.270e-2748.33Uncharacterized protein n=2 Tax=Pusillimonas (ex S... [more]
A0A522FGJ1_9BURK7.530e-2748.84Uncharacterized protein n=1 Tax=Burkholderiaceae b... [more]
A0A023WYM3_PSEST1.140e-2547.01Uncharacterized protein n=7 Tax=Pseudomonadaceae T... [more]
H1KQE8_METEX1.010e-1849.14Uncharacterized protein n=2 Tax=Methylorubrum exto... [more]
UPI001CE429151.120e-1846.79hypothetical protein n=1 Tax=Xenophilus sp. Marsei... [more]
UPI001EDECFBE1.420e-1846.72hypothetical protein n=1 Tax=Methylobacterium hisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12715contigP-wetherbeei_contig12715:1..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog212035.YR261_MIMIV
Model size372
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.33e-11
EggNOG OGs4QF8V@10239|Viruses
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.4295876-CDS-P-wetherbeei_contig12715:0..3661683185958.4295876-CDS-P-wetherbeei_contig12715:0..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12715 1..366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.4379053-UTR-P-wetherbeei_contig12715:366..3721683185958.4379053-UTR-P-wetherbeei_contig12715:366..372Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12715 367..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12715.1.1prot_P-wetherbeei_contig12715.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12715 1..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12715.1.1

>prot_P-wetherbeei_contig12715.1.1 ID=prot_P-wetherbeei_contig12715.1.1|Name=mRNA_P-wetherbeei_contig12715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MPKIALIGTAGRSAAYPLIPELWEAMTADVNSWIEPGDVLVSGGAAWADH
LAVHAYLQGWCAGLCLYLPAPLVGGRFAGPFKSAGSTANYYHQRFSAVIA
EDSLGQVQEAIARGAKVEFEPV
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mRNA from alignment at P-wetherbeei_contig12715:1..372-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12715.1.1 ID=mRNA_P-wetherbeei_contig12715.1.1|Name=mRNA_P-wetherbeei_contig12715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig12715:1..372- (Phaeothamnion wetherbeei SAG_119_79)
ATAGCCATGCCCAAGATTGCACTGATCGGCACCGCTGGCCGCAGCGCGGC CTACCCACTCATCCCGGAGCTTTGGGAGGCAATGACGGCCGACGTGAATT CGTGGATCGAGCCAGGAGATGTTCTCGTCTCTGGTGGGGCGGCTTGGGCC GATCACCTGGCGGTGCACGCCTACCTGCAGGGATGGTGTGCTGGACTTTG CCTGTACCTGCCCGCTCCCCTGGTTGGCGGCAGGTTCGCCGGGCCATTCA AGTCTGCCGGCTCAACGGCCAACTACTACCACCAGCGCTTCTCAGCAGTG ATTGCTGAAGATTCGCTGGGACAAGTGCAGGAAGCGATCGCGCGCGGTGC GAAAGTGGAATTCGAGCCTGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12715:1..372-

>mRNA_P-wetherbeei_contig12715.1.1 ID=mRNA_P-wetherbeei_contig12715.1.1|Name=mRNA_P-wetherbeei_contig12715.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig12715:1..372- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCAAGATTGCACTGATCGGCACCGCTGGCCGCAGCGCGGCCTACCC
ACTCATCCCGGAGCTTTGGGAGGCAATGACGGCCGACGTGAATTCGTGGA
TCGAGCCAGGAGATGTTCTCGTCTCTGGTGGGGCGGCTTGGGCCGATCAC
CTGGCGGTGCACGCCTACCTGCAGGGATGGTGTGCTGGACTTTGCCTGTA
CCTGCCCGCTCCCCTGGTTGGCGGCAGGTTCGCCGGGCCATTCAAGTCTG
CCGGCTCAACGGCCAACTACTACCACCAGCGCTTCTCAGCAGTGATTGCT
GAAGATTCGCTGGGACAAGTGCAGGAAGCGATCGCGCGCGGTGCGAAAGT
GGAATTCGAGCCTGTT
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