mRNA_P-wetherbeei_contig12712.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12712.2.1
Unique NamemRNA_P-wetherbeei_contig12712.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4BEF0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BEF0_9PROT)

HSP 1 Score: 118 bits (295), Expect = 3.310e-33
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            M + + +TRVTILTG YRIKGY+D++PGAR+TDFIVEAK F+AVTD EV+E  LGGRQ+LAA FIDV++DHIQ++ P 
Sbjct:    1 MDKVENRTRVTILTGQYRIKGYVDVLPGARVTDFIVEAKGFIAVTDAEVYEPELGGRQVLAAPFIDVNRDHIQVLAPA 78          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4ASH8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4ASH8_9PROT)

HSP 1 Score: 117 bits (293), Expect = 6.680e-33
Identity = 49/77 (63.64%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMP 231
            M++T+ +T+VTILTG+YRIKGYI ++PGAR+TD++VEA+ F+AVTD EVWEL +GGRQ+++A F++VS+DHIQ++MP
Sbjct:    1 MTQTESRTKVTILTGSYRIKGYIQVMPGARVTDYMVEARGFIAVTDAEVWELVVGGRQLISAPFLNVSRDHIQVIMP 77          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F3YRK5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YRK5_9PROT)

HSP 1 Score: 117 bits (293), Expect = 6.680e-33
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            M     +TRVTI TG+YRIKGYIDLIPGAR+TD++ EAK F+AVTD EVWEL LGGRQI+AA F++V ++HIQ++ PG
Sbjct:    1 MHPDPNRTRVTIFTGSYRIKGYIDLIPGARITDYMAEAKEFIAVTDAEVWELQLGGRQIIAAPFLNVCREHIQVIAPG 78          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4AW44_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AW44_9PROT)

HSP 1 Score: 115 bits (287), Expect = 5.490e-32
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            M+  + +T+VTILTG YRIKGYIDL+PGARLTD+I+EAK FVAVT  EV+E  LGGRQ+ AA FI+V++DHIQIV PG
Sbjct:    1 MATDETRTKVTILTGTYRIKGYIDLLPGARLTDYIIEAKDFVAVTSAEVYESTLGGRQVFAAPFINVNRDHIQIVTPG 78          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A521YPI4_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YPI4_9PROT)

HSP 1 Score: 110 bits (274), Expect = 4.590e-30
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   19 KTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            KT+VTILT  YRIKG+IDL+PGAR+TD++ EA+ F+AVT+ EVWEL +GGRQ+L+A FI VS++HI+I++PG
Sbjct:    2 KTKVTILTPTYRIKGHIDLLPGARITDYMAEARDFIAVTNAEVWELQVGGRQVLSAPFISVSREHIEIILPG 73          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4AD16_9PROT (Uncharacterized protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AD16_9PROT)

HSP 1 Score: 110 bits (274), Expect = 4.990e-30
Identity = 51/74 (68.92%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 QGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            + +T+VTILTG+YRIKGYIDL+PGARLTD+I+EAK FVA+T+ EV+E  LGGRQ+L A FI V++ HIQIV PG
Sbjct:    3 ESRTKVTILTGSYRIKGYIDLLPGARLTDYIIEAKDFVALTNAEVYESVLGGRQVLTAPFISVNRAHIQIVTPG 76          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4A1V9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F4A1V9_9PROT)

HSP 1 Score: 110 bits (274), Expect = 4.990e-30
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   19 KTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            +T+V ILTG+YRIKGYIDL+PGAR+TD++ EAK F+AVTD EV+E+ LGGR ++ A FI+VS+DH+QI++PG
Sbjct:    5 RTKVIILTGSYRIKGYIDLVPGARITDYMAEAKDFLAVTDAEVFEISLGGRNVVTAPFINVSRDHVQIILPG 76          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A0S8B8Y3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B8Y3_9PROT)

HSP 1 Score: 110 bits (274), Expect = 5.270e-30
Identity = 50/76 (65.79%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   10 TQGK-TRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            T+G  T+VTI TG+YRIKGY+DL+PGARLTD++ EAK F+A+T+VEV+E  LGGRQ+L A FI+VS+DH+Q+V PG
Sbjct:    3 TEGSGTKVTIFTGSYRIKGYVDLVPGARLTDYMTEAKDFIALTNVEVYEAVLGGRQVLTAPFINVSRDHVQLVSPG 78          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4DIU4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DIU4_9PROT)

HSP 1 Score: 109 bits (273), Expect = 6.890e-30
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   13 QGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMPG 234
            + KT+VTILTG YRIKGYI L+PGAR+TD++V+AK F+A+TD EVWE   GGRQ+L A FI+VS+DHIQI+ PG
Sbjct:    4 ENKTQVTILTGTYRIKGYISLVPGARVTDYMVDAKDFIAITDAEVWEP--GGRQVLTAPFINVSRDHIQIITPG 75          
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Match: A0A1F4ERA0_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ERA0_9PROT)

HSP 1 Score: 108 bits (269), Expect = 3.050e-29
Identity = 47/77 (61.04%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVWELHLGGRQILAANFIDVSKDHIQIVMP 231
            M++   +T+VTILT +YRIKGYI+L+PGAR+TD++ EA+ F+AV D EVW+L LGGRQ+LAA F+DVS+ HIQ++ P
Sbjct:    1 MAQNDHRTKVTILTSSYRIKGYIELLPGARVTDYMREAREFIAVIDAEVWDLALGGRQMLAAPFLDVSRQHIQVITP 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12712.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4BEF0_9PROT3.310e-3367.95Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ASH8_9PROT6.680e-3363.64Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F3YRK5_9PROT6.680e-3366.67Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4AW44_9PROT5.490e-3269.23Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A521YPI4_9PROT4.590e-3065.28Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A1F4AD16_9PROT4.990e-3068.92Uncharacterized protein n=3 Tax=unclassified Betap... [more]
A0A1F4A1V9_9PROT4.990e-3065.28Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8B8Y3_9PROT5.270e-3065.79Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DIU4_9PROT6.890e-3067.57Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4ERA0_9PROT3.050e-2961.04Uncharacterized protein n=2 Tax=unclassified Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12712contigP-wetherbeei_contig12712:406..642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1499967.BAYZ01000060_gene5988
Model size237
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.07e-15
EggNOG OGs2EQK7@1|root,33I68@2|Bacteria
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.371452-CDS-P-wetherbeei_contig12712:405..6421683185958.371452-CDS-P-wetherbeei_contig12712:405..642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12712 406..642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12712.2.1prot_P-wetherbeei_contig12712.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12712 406..642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12712.2.1

>prot_P-wetherbeei_contig12712.2.1 ID=prot_P-wetherbeei_contig12712.2.1|Name=mRNA_P-wetherbeei_contig12712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MSETQGKTRVTILTGAYRIKGYIDLIPGARLTDFIVEAKSFVAVTDVEVW
ELHLGGRQILAANFIDVSKDHIQIVMPG*
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mRNA from alignment at P-wetherbeei_contig12712:406..642-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12712.2.1 ID=mRNA_P-wetherbeei_contig12712.2.1|Name=mRNA_P-wetherbeei_contig12712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig12712:406..642- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGAAACGCAAGGCAAGACCAGGGTCACGATCCTCACGGGGGCCTA CCGCATCAAGGGCTATATCGACCTGATCCCCGGCGCGCGCCTGACCGACT TCATCGTCGAGGCGAAGAGCTTCGTCGCGGTGACCGACGTCGAGGTCTGG GAACTTCACCTCGGCGGGCGGCAGATCCTCGCCGCCAATTTCATCGACGT CAGCAAGGACCATATCCAGATCGTCATGCCCGGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12712:406..642-

>mRNA_P-wetherbeei_contig12712.2.1 ID=mRNA_P-wetherbeei_contig12712.2.1|Name=mRNA_P-wetherbeei_contig12712.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig12712:406..642- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGAAACGCAAGGCAAGACCAGGGTCACGATCCTCACGGGGGCCTA
CCGCATCAAGGGCTATATCGACCTGATCCCCGGCGCGCGCCTGACCGACT
TCATCGTCGAGGCGAAGAGCTTCGTCGCGGTGACCGACGTCGAGGTCTGG
GAACTTCACCTCGGCGGGCGGCAGATCCTCGCCGCCAATTTCATCGACGT
CAGCAAGGACCATATCCAGATCGTCATGCCCGGATAG
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