mRNA_P-wetherbeei_contig12711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12711.1.1
Unique NamemRNA_P-wetherbeei_contig12711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A5S6QFS2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QFS2_TRIMR)

HSP 1 Score: 94.0 bits (232), Expect = 2.110e-21
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            EW+AA+ E+LAAH RN  W   S++P+G+  I  RWVF  K  +DGT+ + KARL A+G  ++  +DY  TFAP++S   +R LLALA + +F V+QM
Sbjct:    8 EWLAAVDEELAAHYRNRSWE-ISNLPKGKKAIKSRWVFKTKCKADGTVEKRKARLVAKGYLQKAGIDYEETFAPILSYSSLRLLLALAVQNDFYVNQM 104          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 96.7 bits (239), Expect = 3.360e-21
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQ 291
            EW  AM +++A   + G +   + +P GR  IGCRWV+  KR SDG I+RYKARL AQG S+ P LDY  TFAPV+    +R LLA+AAE N E+ Q
Sbjct:   29 EWKRAMDDEIAQLRKLGTYA-PADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQ 124          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-20
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            +W  A+  + +AH +N  W    ++P GR  I CRWVF  K  +DG++ R+KARL A+G S+ P LDY  TF+PV     +R LLA+A +L+ EVHQM
Sbjct:  826 QWKQALDNEYSAHIKNNTWT-LGNLPEGRKAIDCRWVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIAKQLDLEVHQM 922          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A6S7GU92_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU92_PARCT)

HSP 1 Score: 93.6 bits (231), Expect = 3.800e-20
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            +W  A+  + +AH +N  W    ++P GR  I CRWVF  K  +DG++ R+KARL A+G S+ P LDY  TF+PV     +R LLA+A +L+ EVHQM
Sbjct:  332 QWKQALDNEYSAHIKNNTWT-LGNLPEGRKAIDCRWVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQM 428          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT)

HSP 1 Score: 93.2 bits (230), Expect = 5.580e-20
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            +W  A+  + +AH +N  W    ++P GR  I CRWVF  K  +DG++ R+KARL A+G S+ P LDY  TF+PV     +R LLA+A +L+ EVHQM
Sbjct:  605 KWKQALDNEYSAHIKNNTWT-LGNLPEGRKAIDCRWVFKVKYNADGSVERHKARLVAKGYSQEPGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQM 701          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 92.8 bits (229), Expect = 7.550e-20
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            EW  AM+ +  + E N  W+    +P  R  +GCRWVFAKK  S+G + RYKARL AQG S+RP +D   T+APV     +R L+AL  +L++ +HQM
Sbjct:  387 EWKQAMETEYKSLEENKTWK-LCELPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILIALGVQLDWHMHQM 483          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A6S7J2R1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7J2R1_PARCT)

HSP 1 Score: 89.7 bits (221), Expect = 1.140e-19
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    1 EWMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            +W  A+  + +AH +N  W    ++P GR  I CRWVF  K  +DG++ R+KARL A+G S+   LDY  TF+PV     +R LLA+A +L+ EVHQM
Sbjct:    3 QWKQALDNEYSAHIKNNTWT-LGNLPEGRKAIDCRWVFRVKYNADGSVERHKARLVAKGYSQELGLDYDETFSPVAKYTSIRSLLAIANQLDLEVHQM 99          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A151U447_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151U447_CAJCA)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-19
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 WMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            W  A++ +L A  +N  W  +S +P G+  IGC+WVF  K  SDG+I RYKARL A+G ++   +DY  TF+PV+    +R LL++AA  N+E+HQ+
Sbjct:   23 WKDAIERELTALSKNHPWTLTS-LPEGKKTIGCKWVFKVKHNSDGSIERYKARLVAKGFTQTVGIDYLETFSPVVKMTTIRVLLSIAANCNWELHQL 118          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A409WUQ4_9AGAR (Uncharacterized protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WUQ4_9AGAR)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-19
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    4 WMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            W  A+ E++   ERNG W        G N +G +WVF  K+ + G I+RYKARL AQG S+ P +DY  TFAPV     +R +LA+AA  N+E+HQ+
Sbjct: 1054 WEKAILEEIGTLERNGTWVLEDEPSDGSNIVGSKWVFKIKKDASGNIVRYKARLVAQGFSQVPGVDYFDTFAPVARLSSIRAVLAIAAHRNWEIHQI 1150          
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Match: A0A2G8RNC8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RNC8_9APHY)

HSP 1 Score: 91.3 bits (225), Expect = 2.670e-19
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    4 WMAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYKARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQM 294
            W  AM+E++ A  ++G WR   H P G N + CRWVF  K+ + G I RY ARL A+G S+ P  D+  T+APV     +R +LALAA L+ E+HQ+
Sbjct:  978 WEEAMKEEMEALSKHGTWR-LEHPPPGTNVVSCRWVFHAKKDASGNISRYHARLVARGFSQIPGTDFFDTYAPVAKTASIRTVLALAARLDLEIHQV 1073          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6QFS2_TRIMR2.110e-2147.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2V3W8_TRAPU3.360e-2151.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7GU81_PARCT2.990e-2045.92Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7GU92_PARCT3.800e-2045.92Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HIB2_PARCT5.580e-2045.92Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A075B3L7_ROZAC7.550e-2045.92Integrase, catalytic core domain-containing protei... [more]
A0A6S7J2R1_PARCT1.140e-1944.90Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
A0A151U447_CAJCA1.290e-1944.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A409WUQ4_9AGAR1.960e-1945.36Uncharacterized protein n=1 Tax=Panaeolus cyanesce... [more]
A0A2G8RNC8_9APHY2.670e-1945.36Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12711contigP-wetherbeei_contig12711:1511..1813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3750.XP_008379771.1
PFAMsRVT_2,Retrotran_gag_2
Model size303
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.14e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,389X1@33090|Viridiplantae,3GNF8@35493|Streptophyta
Descriptiongag-polypeptide of LTR copia-type
Cds size297
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.2980354-UTR-P-wetherbeei_contig12711:1510..15161683185958.2980354-UTR-P-wetherbeei_contig12711:1510..1516Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12711 1511..1516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.3071165-CDS-P-wetherbeei_contig12711:1516..18131683185958.3071165-CDS-P-wetherbeei_contig12711:1516..1813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12711 1517..1813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12711.1.1prot_P-wetherbeei_contig12711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12711 1517..1813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12711.1.1

>prot_P-wetherbeei_contig12711.1.1 ID=prot_P-wetherbeei_contig12711.1.1|Name=mRNA_P-wetherbeei_contig12711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MAAMQEKLAAHERNGVWRRSSHVPRGRNFIGCRWVFAKKRASDGTILRYK
ARLAAQGSSERPRLDYGVTFAPVMSAGWMRYLLALAAELNFEVHQMAG*
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mRNA from alignment at P-wetherbeei_contig12711:1511..1813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12711.1.1 ID=mRNA_P-wetherbeei_contig12711.1.1|Name=mRNA_P-wetherbeei_contig12711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig12711:1511..1813+ (Phaeothamnion wetherbeei SAG_119_79)
GAATGGATGGCGGCAATGCAGGAGAAGCTTGCCGCCCACGAGCGCAATGG GGTGTGGCGTCGCTCATCGCATGTTCCGAGGGGGCGCAATTTCATCGGCT GCCGGTGGGTGTTTGCGAAGAAGCGGGCATCGGACGGGACCATTCTGAGA TACAAAGCACGGCTTGCGGCGCAGGGCTCCTCGGAGCGGCCGCGCCTGGA CTACGGCGTGACGTTTGCGCCAGTCATGTCGGCGGGCTGGATGCGATATC TCCTTGCACTGGCGGCAGAGCTGAACTTCGAGGTGCACCAGATGGCTGGG TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12711:1511..1813+

>mRNA_P-wetherbeei_contig12711.1.1 ID=mRNA_P-wetherbeei_contig12711.1.1|Name=mRNA_P-wetherbeei_contig12711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig12711:1511..1813+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCAATGCAGGAGAAGCTTGCCGCCCACGAGCGCAATGGGGTGTG
GCGTCGCTCATCGCATGTTCCGAGGGGGCGCAATTTCATCGGCTGCCGGT
GGGTGTTTGCGAAGAAGCGGGCATCGGACGGGACCATTCTGAGATACAAA
GCACGGCTTGCGGCGCAGGGCTCCTCGGAGCGGCCGCGCCTGGACTACGG
CGTGACGTTTGCGCCAGTCATGTCGGCGGGCTGGATGCGATATCTCCTTG
CACTGGCGGCAGAGCTGAACTTCGAGGTGCACCAGATGGCTGGGTGA
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