mRNA_P-wetherbeei_contig12706.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12706.1.1
Unique NamemRNA_P-wetherbeei_contig12706.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12706.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12706contigP-wetherbeei_contig12706:459..1080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0Y1
PFAMsANAPC4_WD40,EF-hand_7,EF-hand_8,HELP,WD40
Model size622
Max annot lvl2759|Eukaryota
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.35e-12
EggNOG OGsCOG2319@1|root,KOG2106@2759|Eukaryota
Descriptionmicrotubule binding
Cds size621
COG categoryO
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185957.877758-CDS-P-wetherbeei_contig12706:459..10801683185957.877758-CDS-P-wetherbeei_contig12706:459..1080Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12706 460..1080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12706.1.1prot_P-wetherbeei_contig12706.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12706 460..1080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12706.1.1

>prot_P-wetherbeei_contig12706.1.1 ID=prot_P-wetherbeei_contig12706.1.1|Name=mRNA_P-wetherbeei_contig12706.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
GIAFPAEGGGAVVAPVSGGNAGDGVVFRGHGGSRVLSLAVSPCRTLVATG
DAAGAVVVWAAATGTVVTALSRSHGGPVVAAAFDKSGKKLAAVSAGSAAA
AATVAVWESPSAGWRDAARLCRGEGDGSGGRPLFITWLDGACNGSIAGAG
GSGASQLMTGGQNYATFWSLSPNLTSAAGDFGHHERQTLLCATALGGGAV
AGTSAGT
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mRNA from alignment at P-wetherbeei_contig12706:459..1080-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12706.1.1 ID=mRNA_P-wetherbeei_contig12706.1.1|Name=mRNA_P-wetherbeei_contig12706.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=622bp|location=Sequence derived from alignment at P-wetherbeei_contig12706:459..1080- (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGCCTTCCCTGCCGAGGGCGGCGGTGCGGTGGTGGCGCCCGTCTC
CGGCGGAAATGCTGGCGACGGCGTCGTTTTCCGCGGCCACGGCGGCTCGC
GCGTTCTCAGCCTGGCAGTGTCGCCGTGCCGCACCCTCGTGGCGACCGGC
GATGCCGCCGGCGCTGTCGTCGTGTGGGCGGCCGCCACCGGCACTGTCGT
GACCGCGCTGTCACGGTCACATGGCGGGCCCGTCGTCGCGGCGGCCTTCG
ACAAGAGCGGCAAAAAGTTGGCCGCCGTCAGCGCAGGCAGCGCCGCCGCT
GCCGCCACTGTGGCTGTGTGGGAGTCCCCATCCGCGGGCTGGCGGGACGC
CGCTCGGCTATGTCGCGGGGAGGGTGACGGAAGCGGCGGTCGCCCGCTCT
TCATCACCTGGCTGGACGGCGCGTGCAACGGCAGCATTGCCGGTGCTGGT
GGCAGTGGCGCATCGCAGCTCATGACCGGCGGCCAAAACTACGCCACCTT
CTGGTCGCTGAGCCCAAACCTAACGTCCGCCGCCGGTGACTTCGGCCACC
ACGAGAGGCAGACCCTGCTCTGCGCCACGGCCCTCGGCGGCGGCGCAGTC
GCTGGCACGTCCGCAGGCACGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12706:459..1080-

>mRNA_P-wetherbeei_contig12706.1.1 ID=mRNA_P-wetherbeei_contig12706.1.1|Name=mRNA_P-wetherbeei_contig12706.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig12706:459..1080- (Phaeothamnion wetherbeei SAG_119_79)
GGCATCGCCTTCCCTGCCGAGGGCGGCGGTGCGGTGGTGGCGCCCGTCTC
CGGCGGAAATGCTGGCGACGGCGTCGTTTTCCGCGGCCACGGCGGCTCGC
GCGTTCTCAGCCTGGCAGTGTCGCCGTGCCGCACCCTCGTGGCGACCGGC
GATGCCGCCGGCGCTGTCGTCGTGTGGGCGGCCGCCACCGGCACTGTCGT
GACCGCGCTGTCACGGTCACATGGCGGGCCCGTCGTCGCGGCGGCCTTCG
ACAAGAGCGGCAAAAAGTTGGCCGCCGTCAGCGCAGGCAGCGCCGCCGCT
GCCGCCACTGTGGCTGTGTGGGAGTCCCCATCCGCGGGCTGGCGGGACGC
CGCTCGGCTATGTCGCGGGGAGGGTGACGGAAGCGGCGGTCGCCCGCTCT
TCATCACCTGGCTGGACGGCGCGTGCAACGGCAGCATTGCCGGTGCTGGT
GGCAGTGGCGCATCGCAGCTCATGACCGGCGGCCAAAACTACGCCACCTT
CTGGTCGCTGAGCCCAAACCTAACGTCCGCCGCCGGTGACTTCGGCCACC
ACGAGAGGCAGACCCTGCTCTGCGCCACGGCCCTCGGCGGCGGCGCAGTC
GCTGGCACGTCCGCAGGCACG
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