mRNA_P-wetherbeei_contig1270.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1270.3.1
Unique NamemRNA_P-wetherbeei_contig1270.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: D8LRT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRT4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.820e-22
Identity = 54/99 (54.55%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVNELLI+PLQ+F++DSMHL+KKCTKPDRK                                   EFM VA+ATTVGFLVMGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRK-----------------------------------EFMQVAKATTVGFLVMGFIGFFVKLVHIPINN 64
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: A0A835YV57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV57_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.750e-21
Identity = 54/99 (54.55%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVNELLI PLQ+F +DS+ LVKKCTKPDRK                                   EFMIVA+ATTVGFLVMGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNELLIIPLQQFFKDSVQLVKKCTKPDRK-----------------------------------EFMIVAKATTVGFLVMGFIGFFVKLIHIPINN 64
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: A0A662WY22_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WY22_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.470e-19
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVN L+ +PLQ+F ++S+HLVKKC KPDRKG    + L           TF +    A  F    EF  +A AT+VGFL+MGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNTLVFQPLQQFFKNSVHLVKKCNKPDRKGAFSGSYL-----------TFLF----AFAFCAAAEFARIAGATSVGFLMMGFIGFFVKLVHIPINN 84
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: B7FQV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQV9_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 9.090e-18
Identity = 47/94 (50.00%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   16 ELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            E+LI+PLQ+FA+DSMHLVKKCTKPDRK                                   EF  +ARAT VGFL+MGFIGFFVKL HIPI+ 
Sbjct:   10 EVLIEPLQQFAKDSMHLVKKCTKPDRK-----------------------------------EFTAIARATGVGFLIMGFIGFFVKLIHIPINN 68
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: W7U037_9STRA (Transport protein sec61 subunit gamma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U037_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.900e-17
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVN  +I+PL++FA+DS HLVKKCTKPDRK                                   EF  +A AT+VGFL+MGFIGFFVKL HIPI+ 
Sbjct:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRK-----------------------------------EFARIAYATSVGFLIMGFIGFFVKLIHIPINN 87
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: W4FU52_9STRA (Protein transporter Sec61 subunit gamma n=8 Tax=Oomycota TaxID=4762 RepID=W4FU52_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.490e-17
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVN L+I+PL++FA++S+HLVKKCTKPDRK                                   EF  +A AT VGFL+MGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRK-----------------------------------EFARIAGATGVGFLLMGFIGFFVKLVHIPINN 64
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: B5YLP6_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLP6_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 9.030e-17
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   13 NELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            NE+LI+PL++FA+DS+HLVKKCTKPDRK                                   EF  +A+AT +GFL+MGFIGFFVKL HIPI+ 
Sbjct:    8 NEVLIQPLRQFAKDSIHLVKKCTKPDRK-----------------------------------EFTAIAKATGIGFLIMGFIGFFVKLVHIPINN 67
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: A0A7S2VF36_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF36_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-16
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   13 NELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            NE+L++PL++FA+DSMHLVKKCTKPDRK                                   EF+ +A+AT VGF +MGFIGFFVKL HIPI+ 
Sbjct:   36 NEVLVEPLKQFAKDSMHLVKKCTKPDRK-----------------------------------EFVAIAQATGVGFCIMGFIGFFVKLIHIPINN 95
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BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: A0A067CAZ0_SAPPC (Translocase SEC61 complex gamma subunit n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAZ0_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 1.710e-16
Identity = 45/99 (45.45%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVN ++I+PL+ FA++S+HLVKKCTKPDRK                                   EF  +A AT++GFL+MGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRK-----------------------------------EFTRIAGATSIGFLMMGFIGFFVKLVHIPINN 64
[Close]
BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Match: K3X8N9_GLOUD (Uncharacterized protein n=6 Tax=Oomycota TaxID=4762 RepID=K3X8N9_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 1.750e-16
Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:    1 MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPTTTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK 297
            MSDVN L+ +PLQ+F ++S+HL+KKCTKPDRK                                   EF  +A AT+VGFL+MGFIGFFVKL HIPI+ 
Sbjct:    1 MSDVNTLVFQPLQQFFKNSVHLIKKCTKPDRK-----------------------------------EFTRIAAATSVGFLMMGFIGFFVKLVHIPINN 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1270.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT4_ECTSI1.820e-2254.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YV57_9STRA3.750e-2154.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662WY22_9STRA5.470e-1951.52Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
B7FQV9_PHATC9.090e-1850.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
W7U037_9STRA5.900e-1747.47Transport protein sec61 subunit gamma n=2 Tax=Mono... [more]
W4FU52_9STRA6.490e-1747.47Protein transporter Sec61 subunit gamma n=8 Tax=Oo... [more]
B5YLP6_THAPS9.030e-1746.32Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2VF36_9STRA1.390e-1646.32Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A067CAZ0_SAPPC1.710e-1645.45Translocase SEC61 complex gamma subunit n=2 Tax=Sa... [more]
K3X8N9_GLOUD1.750e-1645.45Uncharacterized protein n=6 Tax=Oomycota TaxID=476... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1270contigP-wetherbeei_contig1270:3903..5031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRT4
Preferred nameSEC61G
PFAMsSecE
Model size934
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K07342
KEGG TC3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
Exons2
Evalue9.29e-25
EggNOG OGsCOG2443@1|root,KOG3498@2759|Eukaryota
Ec32 ortholog descriptionProtein translocase SecE domain
Ec32 orthologEc-08_002350.1
EC3.4.11.9
DescriptionP-P-bond-hydrolysis-driven protein transmembrane transporter activity
Cds size300
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185957.7760208-UTR-P-wetherbeei_contig1270:3902..45361683185957.7760208-UTR-P-wetherbeei_contig1270:3902..4536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1270 3903..4536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185957.7870784-CDS-P-wetherbeei_contig1270:4536..46981683185957.7870784-CDS-P-wetherbeei_contig1270:4536..4698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1270 4537..4698 -
1683185957.797786-CDS-P-wetherbeei_contig1270:4893..50311683185957.797786-CDS-P-wetherbeei_contig1270:4893..5031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1270 4894..5031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1270.3.1prot_P-wetherbeei_contig1270.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1270 4537..5031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1270.3.1

>prot_P-wetherbeei_contig1270.3.1 ID=prot_P-wetherbeei_contig1270.3.1|Name=mRNA_P-wetherbeei_contig1270.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MSDVNELLIKPLQEFARDSMHLVKKCTKPDRKGEPRFNALEAPCPRRQPT
TTFFWFPPLAARFLRHTEFMIVARATTVGFLVMGFIGFFVKLFHIPISK*
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mRNA from alignment at P-wetherbeei_contig1270:3903..5031-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1270.3.1 ID=mRNA_P-wetherbeei_contig1270.3.1|Name=mRNA_P-wetherbeei_contig1270.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-wetherbeei_contig1270:3903..5031- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACGTGAATGAACTCTTGATCAAGCCGCTGCAGGAGTTCGCAAG
AGACTCCATGCATCTCGTCAAGAAGTGCACAAAACCTGACAGAAAGGGTG
AGCCAAGATTCAATGCGCTTGAGGCTCCGTGCCCTCGTGTGCAACGCTTT
GAAGTGACTACGCCTTTGGTCGTTTTAGCCTGAAACCAGCGCGCAATGTC
ATCAGAGACCTGGCGAACGTGCAACGACAGCAGTGGATCTGTCGCTTTCA
AGAGACTCACGATTTTGTTGAACCATGGAGGACGCCGTTTTCCTCACTCC
AAATGACGTTAAATTCCAAAAGTTCTTTAGTAGCGACAGCCGACTACAAC
GTTCTTTTGGTTCCCCCCTCTTGCTGCTCGCTTTCTACGACACACAGAGT
TTATGATTGTAGCACGGGCTACCACTGTCGGATTTCTCGTCATGGGCTTC
ATTGGATTTTTCGTGAAGCTATTTCACATCCCAATCTCAAAGTAAGCCCC
GCCTTGATGTCCTTTGCGTGGCGCTAGTTTGCTTTGATTGTCTTGGTTGC
CTCGTGCTGCGCTGTGAGATGGCCGTTTGCGGTGAAGGGCCACGCGCCAT
CAAAACTTTCGAGGATCACGGTGCACTTCATTTCTCTCCTAGATGGCATC
CCCTATTTCTGACACTTCCAAATTCGTCGCGCCGCCGCTCCTCTTCTCCC
CATTTGTATGACCAGCATTCTCTTGGGAGGATGACACCCCGCACTGAAGT
CACGACGTCGCAACCGCAGCCTGTTCTCAGCGATGTCACCGCGGGCTGTG
CTGCCACCGGCGGCCTTTAAGAGAGGCGCATGAATGCACACGAGGCCGTG
GGCGATGGCGGGAAGCGAACAGCGGATGATGGCGGGCGGCGCTTCCAGTG
CCGCACATCTTGCCGTGCGAAGCTCGGCTTGCTGCTGCACGCAGCGGAAG
GCGGCGTCGTTTCGCTGCGCCGTCCAGCGGGGGGACTGGGAAGTCGGGAG
CCGGAGAGAAATGGGGCTTGCCGGCAAGCAAGGGAGTGGGGGACTTATTG
CTATGTATCACATCACTTGGGTTAATAGACGAGAACCAGTCTTCGTGTTT
GAGTGCTTGTTGAGTCCGGCTATCTGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1270:3903..5031-

>mRNA_P-wetherbeei_contig1270.3.1 ID=mRNA_P-wetherbeei_contig1270.3.1|Name=mRNA_P-wetherbeei_contig1270.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig1270:3903..5031- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGACGTGAATGAACTCTTGATCAAGCCGCTGCAGGAGTTCGCAAG
AGACTCCATGCATCTCGTCAAGAAGTGCACAAAACCTGACAGAAAGGGTG
AGCCAAGATTCAATGCGCTTGAGGCTCCGTGCCCTCGTCGACAGCCGACT
ACAACGTTCTTTTGGTTCCCCCCTCTTGCTGCTCGCTTTCTACGACACAC
AGAGTTTATGATTGTAGCACGGGCTACCACTGTCGGATTTCTCGTCATGG
GCTTCATTGGATTTTTCGTGAAGCTATTTCACATCCCAATCTCAAAGTAA
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