mRNA_P-wetherbeei_contig1270.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1270.1.1
Unique NamemRNA_P-wetherbeei_contig1270.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: A0A836CEA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEA4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.380e-28
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = 2 
Query:  110 ALEAATPFRCCGRVRTRSEGVLSLRAATADADADDAGWGEDSSEVTVKKKGTRNFVRYE--DGRDALPYDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAESTELLRAAAERVAARL 532
            AL+   P     R   R  G  +LR+     D   AG      +  V+KK  + +  Y+  D RD LPYDV+ ++PPRRKLG   LDP   CGD+IQH   S+V+  VS HYRF+ G F M+RK A++TELLRAAAER+AAR+
Sbjct:   21 ALKPQIPHGATSRPHGRP-GTAALRSGYGSWDDGPAGNDGIIGDAIVRKKQGKQYKEYKPRDDRDRLPYDVYNASPPRRKLGRFALDPTTGCGDMIQHGMKSYVVGKVSCHYRFEGGAFKMFRKEADATELLRAAAERIAARM 162
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: A0A7S0BFG3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFG3_9RHOD)

HSP 1 Score: 89.4 bits (220), Expect = 3.960e-18
Identity = 60/170 (35.29%), Postives = 89/170 (52.35%), Query Frame = 2 
Query:   38 MRTWIFVSSLPVVVQAFSPQPLPLALEAATPFRCCGRVRTRSEGVLSLRAATADADADDAGWGEDSSEVTVKKKGTRNFVRYEDGRDALPYDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAESTELLRAAAERVAARLISDHN 547
            M    FV   P+  ++ +   L LA+++ T        RTR +    L +   D+  DD     D   +  K + +     ++DGRD LP+DV V TPP R+LG  +LDP+LNCGD++ +  +S+V+R V  HY F+ G FV+ RK AE   L R + E    RL +  N
Sbjct:   36 MEVACFVQGFPLATRSRTTI-LQLAVQSRT-------TRTREDKRCRLLSKEDDSAEDDQIPELDGMMIRWKNQKSS----FKDGRDLLPFDVDVLTPPSRRLGRFRLDPRLNCGDVVDYDGTSYVVRRVRMHYAFRNGAFVVTRKTAEVKTLGRKSLESYLERLYNSRN 193
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: A0A7S3E7F6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E7F6_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 2.560e-17
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 2 
Query:  281 YEDGRDALPYDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAE 484
            ++DGRD LP+DV V TPP R LG  +LDP+LNCGDI+ +  +S+V+R V  HY F+ G FV+ RK AE
Sbjct:   70 FKDGRDLLPFDVNVLTPPSRSLGRFRLDPRLNCGDIVDYEGTSYVVRRVRMHYAFRNGTFVVTRKTAE 137
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: A0A7R9UDE4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDE4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.310e-15
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = 2 
Query:  170 VLSLRAATADADADDAGW-GED----SSEVTVKKKGTRNFV---RYEDGRDALPYDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAESTELLRAAAERVAARL 532
             L LRA   +      GW GE+    S E+ V+KK  R +    + +D RD LP+DVF  TPP + LG+ +L P  NCGD++ +   SF++R V+ +Y++  G   M++K A   EL RA  ER   RL
Sbjct:   37 ALGLRAMAGE------GWDGENEDDLSDEMEVQKKKGRGWKAPKKAKDRRDQLPFDVFDITPPTKMLGSFRLHPHTNCGDLLTYNDESFLVRRVACNYKYSRGALRMFKKTAHVVELNRAFQERSLERL 159
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: A0A836CD29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD29_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-13
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 2 
Query:  221 WGEDSSEVTVKKKGTRNF-VRYEDGRDAL-------------PYDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAESTELLRAAAERVAARL 532
            W +D     ++  G++   VR E  R  L             PYDV+ ++PPRRKLG   LD    CGD+I H   S+V+       RF+ G F M+RK A++TELLRAAAER+ AR+
Sbjct:  124 WLQDEEPTVLRLGGSQQHCVRVERARHGLLSDRTMSRALRLLPYDVYNASPPRRKLGRFALDLTTGCGDMILHGMKSYVVG------RFEGGAFKMFRKEADATELLRAAAERIVARM 235
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BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Match: C1MUH9_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUH9_MICPC)

HSP 1 Score: 51.6 bits (122), Expect = 2.460e-5
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 2 
Query:  308 YDVFVSTPPRRKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRF 460
            Y+V V+TPP R LGT +     +CGD I+ R+  FV+  V+ HY+ + G++
Sbjct:    1 YEVKVTTPPERSLGTHRFPANTHCGDTIELRNRYFVVDKVAYHYKLERGKY 51
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1270.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CEA4_9STRA2.380e-2846.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0BFG3_9RHOD3.960e-1835.29Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3E7F6_9RHOD2.560e-1755.88Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7R9UDE4_9STRA4.310e-1538.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CD29_9STRA1.050e-1340.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1MUH9_MICPC2.460e-541.18Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1270contigP-wetherbeei_contig1270:66..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS14
Model size760
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons1
Evalue1.4e-16
EggNOG OGs2E6BW@1|root,2SD28@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_001750.1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185957.658319-UTR-P-wetherbeei_contig1270:65..1021683185957.658319-UTR-P-wetherbeei_contig1270:65..102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1270 66..102 +
1683185957.6767716-UTR-P-wetherbeei_contig1270:675..8251683185957.6767716-UTR-P-wetherbeei_contig1270:675..825Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1270 676..825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185957.667883-CDS-P-wetherbeei_contig1270:102..6751683185957.667883-CDS-P-wetherbeei_contig1270:102..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1270 103..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1270.1.1prot_P-wetherbeei_contig1270.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1270 103..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1270.1.1

>prot_P-wetherbeei_contig1270.1.1 ID=prot_P-wetherbeei_contig1270.1.1|Name=mRNA_P-wetherbeei_contig1270.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MRTWIFVSSLPVVVQAFSPQPLPLALEAATPFRCCGRVRTRSEGVLSLRA
ATADADADDAGWGEDSSEVTVKKKGTRNFVRYEDGRDALPYDVFVSTPPR
RKLGTLKLDPQLNCGDIIQHRSSSFVIRSVSNHYRFQAGRFVMYRKAAES
TELLRAAAERVAARLISDHNVAAAEAALEALRVESYERKV*
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mRNA from alignment at P-wetherbeei_contig1270:66..825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1270.1.1 ID=mRNA_P-wetherbeei_contig1270.1.1|Name=mRNA_P-wetherbeei_contig1270.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=760bp|location=Sequence derived from alignment at P-wetherbeei_contig1270:66..825+ (Phaeothamnion wetherbeei SAG_119_79)
AGACGACACGAGAAAGCAGCCAATAGCGTAGAGAAGGATGCGCACGTGGA
TTTTCGTTTCGAGTCTGCCGGTGGTCGTCCAAGCCTTCTCGCCCCAGCCG
TTGCCGCTGGCTCTCGAGGCGGCAACGCCATTCCGCTGCTGCGGGCGTGT
TCGCACCCGATCGGAGGGGGTGCTGTCCCTGAGGGCGGCCACCGCCGACG
CCGACGCCGATGACGCCGGCTGGGGGGAAGACAGCAGCGAGGTCACAGTG
AAGAAGAAGGGCACAAGGAACTTTGTGCGTTACGAAGACGGCCGCGACGC
TCTGCCTTACGATGTATTTGTGTCAACGCCGCCGCGACGAAAGCTGGGCA
CTCTGAAGTTGGACCCTCAATTGAACTGCGGCGACATAATCCAGCACCGG
AGCAGCAGTTTCGTCATCAGGAGCGTCTCCAACCATTATCGATTTCAGGC
GGGGCGTTTCGTGATGTACAGGAAAGCGGCGGAGAGCACAGAGCTGCTGC
GCGCCGCCGCGGAGCGAGTGGCGGCGCGGCTCATTAGCGACCACAATGTG
GCGGCAGCAGAAGCGGCCCTCGAGGCGTTGCGCGTGGAAAGCTATGAGAG
GAAGGTTTGAGAGTGAATGGTATTAAGACCGATGGCTGGTCTCCTGCAAT
TTTTTTGGCCGGACGTATGCTTTTCGGGCAAAGAAACTCGAAACTACGAG
GAATCACAAATGAAAACGGAGCCGAAAGTTGGAGTTTGACGAACGAGAAT
CTACTCTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1270:66..825+

>mRNA_P-wetherbeei_contig1270.1.1 ID=mRNA_P-wetherbeei_contig1270.1.1|Name=mRNA_P-wetherbeei_contig1270.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig1270:66..825+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCACGTGGATTTTCGTTTCGAGTCTGCCGGTGGTCGTCCAAGCCTT
CTCGCCCCAGCCGTTGCCGCTGGCTCTCGAGGCGGCAACGCCATTCCGCT
GCTGCGGGCGTGTTCGCACCCGATCGGAGGGGGTGCTGTCCCTGAGGGCG
GCCACCGCCGACGCCGACGCCGATGACGCCGGCTGGGGGGAAGACAGCAG
CGAGGTCACAGTGAAGAAGAAGGGCACAAGGAACTTTGTGCGTTACGAAG
ACGGCCGCGACGCTCTGCCTTACGATGTATTTGTGTCAACGCCGCCGCGA
CGAAAGCTGGGCACTCTGAAGTTGGACCCTCAATTGAACTGCGGCGACAT
AATCCAGCACCGGAGCAGCAGTTTCGTCATCAGGAGCGTCTCCAACCATT
ATCGATTTCAGGCGGGGCGTTTCGTGATGTACAGGAAAGCGGCGGAGAGC
ACAGAGCTGCTGCGCGCCGCCGCGGAGCGAGTGGCGGCGCGGCTCATTAG
CGACCACAATGTGGCGGCAGCAGAAGCGGCCCTCGAGGCGTTGCGCGTGG
AAAGCTATGAGAGGAAGGTTTGA
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