mRNA_P-wetherbeei_contig12680.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12680.2.1
Unique NamemRNA_P-wetherbeei_contig12680.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12680.2.1 vs. uniprot
Match: A0A7W0GI36_9ACTN (Gamma-glutamylcyclotransferase n=2 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W0GI36_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 5.920e-6
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    7 YGSN-NVEQMRARC-ESPMLWSRPAVLRGWTRVFAARVAAWGGGSVANVAPMDGGEVFGALYMLTPQELHRLDMFEGVAQGHYAKTPV 264
            YGSN +  QMR RC  SP   +    +RGW   F      W G ++A + P   GEVF ALY +TP +   LD +EG   G Y K  V
Sbjct:    7 YGSNMDPAQMRQRCPHSPSAGA--GWVRGWRLTFGGEQLGWEG-ALATIVPDPSGEVFVALYDVTPYDEGILDAWEGADHGLYRKLRV 91
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BLAST of mRNA_P-wetherbeei_contig12680.2.1 vs. uniprot
Match: A0A662JKK6_9CREN (Uncharacterized protein n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662JKK6_9CREN)

HSP 1 Score: 48.1 bits (113), Expect = 9.570e-5
Identity = 33/91 (36.26%), Postives = 44/91 (48.35%), Query Frame = 1 
Query:    1 FCYGSN-NVEQMRARCESPMLWSRPAVLRGWTRVFAARVAAWGGGSVANVAPMDGGEVFGALYMLTPQELHRLDMFEGVAQGHYAKTPVAV 270
            F YG N NV  +  R   P+   R  +L G+   F+       G   A V P     V GALY++T ++L +LD FEGV  GHY    V +
Sbjct:    9 FAYGRNVNVNFLVGRAGKPIAMFR-GILPGYKLEFSKVPGPRSGVGYATVVPAAREWVEGALYLMTEEQLAKLDEFEGVPTGHYRHEDVKI 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12680.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7W0GI36_9ACTN5.920e-640.91Gamma-glutamylcyclotransferase n=2 Tax=Geodermatop... [more]
A0A662JKK6_9CREN9.570e-536.26Uncharacterized protein n=1 Tax=Thermoprotei archa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12680contigP-wetherbeei_contig12680:619..888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD03653
Preferred nameGGACT
PFAMsGGACT
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K19761
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005198,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0008307,GO:0009056,GO:0009628,GO:0016829,GO:0016840,GO:0016842,GO:0032501,GO:0032502,GO:0042219,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0061929,GO:0071704,GO:0072359,GO:0080167,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue7.23e-09
EggNOG OGsCOG2105@1|root,KOG4450@2759|Eukaryota
Ec32 ortholog descriptionGamma-glutamylcyclotransferase
Ec32 orthologEc-06_002460.1
Descriptiongamma-glutamylaminecyclotransferase activity
Cds size240
COG categoryS
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.5113761-CDS-P-wetherbeei_contig12680:618..8581683185956.5113761-CDS-P-wetherbeei_contig12680:618..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12680 619..858 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.520281-UTR-P-wetherbeei_contig12680:858..8881683185956.520281-UTR-P-wetherbeei_contig12680:858..888Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12680 859..888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12680.2.1prot_P-wetherbeei_contig12680.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12680 619..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12680.2.1

>prot_P-wetherbeei_contig12680.2.1 ID=prot_P-wetherbeei_contig12680.2.1|Name=mRNA_P-wetherbeei_contig12680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MRARCESPMLWSRPAVLRGWTRVFAARVAAWGGGSVANVAPMDGGEVFGA
LYMLTPQELHRLDMFEGVAQGHYAKTPVAV
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mRNA from alignment at P-wetherbeei_contig12680:619..888-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12680.2.1 ID=mRNA_P-wetherbeei_contig12680.2.1|Name=mRNA_P-wetherbeei_contig12680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig12680:619..888- (Phaeothamnion wetherbeei SAG_119_79)
TTCTGCTATGGCAGCAACAACGTTGAGCAGATGCGCGCCCGCTGCGAGAG
CCCCATGCTCTGGTCGCGGCCTGCCGTCCTCCGCGGCTGGACGCGCGTCT
TCGCCGCGCGCGTCGCCGCGTGGGGCGGCGGCTCCGTGGCCAACGTGGCG
CCGATGGACGGCGGCGAGGTCTTCGGCGCGCTCTACATGCTGACACCACA
GGAGCTCCACCGTCTCGACATGTTCGAGGGGGTAGCGCAGGGACACTACG
CCAAGACGCCTGTGGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12680:619..888-

>mRNA_P-wetherbeei_contig12680.2.1 ID=mRNA_P-wetherbeei_contig12680.2.1|Name=mRNA_P-wetherbeei_contig12680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig12680:619..888- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCCCGCTGCGAGAGCCCCATGCTCTGGTCGCGGCCTGCCGTCCT
CCGCGGCTGGACGCGCGTCTTCGCCGCGCGCGTCGCCGCGTGGGGCGGCG
GCTCCGTGGCCAACGTGGCGCCGATGGACGGCGGCGAGGTCTTCGGCGCG
CTCTACATGCTGACACCACAGGAGCTCCACCGTCTCGACATGTTCGAGGG
GGTAGCGCAGGGACACTACGCCAAGACGCCTGTGGCGGTG
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