mRNA_P-wetherbeei_contig12675.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12675.1.1
Unique NamemRNA_P-wetherbeei_contig12675.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.700e-16
Identity = 57/139 (41.01%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQGVVFRGLPPGVQPAVAFYGRDKAVRFL 984
            W+L LERE+ G+ETTC+GV   P+T+ C+  S  +W V C SGE + +GGR             IH  D V   L     + GT                  LSLEVNG  QGVVF  +PP V PAV FYG  K+VR +
Sbjct:  313 WELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRMTRK------IHPLDSVRLTLNC---ECGT------------------LSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLV 424
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-15
Identity = 56/139 (40.29%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQGVVFRGLPPGVQPAVAFYGRDKAVRFL 984
            W+L LERE+ G+ETTC+GV   P+T+ C+  S  +W V C SGE + +GGR             IH  D V   L     + GT                  L+LEVNG  QGVVF  +PP V PAV FYG  K+VR +
Sbjct:  439 WELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNR------VTRKIHPLDSVRLTLNC---ECGT------------------LNLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLV 550
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A0A6F9DED7_9ASCI (Probable E3 ubiquitin-protein ligase HERC1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DED7_9ASCI)

HSP 1 Score: 60.8 bits (146), Expect = 4.540e-6
Identity = 43/133 (32.33%), Postives = 58/133 (43.61%), Query Frame = 1 
Query:  565 RWQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQGVVFRGLPPGVQ--PAVAFY 957
            RW+  +  E  G E TC+GV R+P+TD  HR++ D+W     SG  +                   HNG+L     +      G V T     VL + ER+LS  L  NG    V FR + P  +  P V FY
Sbjct: 1938 RWKFTIMNEVQGNEGTCVGVSRFPVTDISHRSTPDMWLYRAYSGNLY-------------------HNGELTH---QFSSFSKGDVVT----CVLDAVERTLSFGL--NGAEPEVAFRDVDPSSELYPCVMFY 2042
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A0A7S0JWR0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JWR0_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 6.410e-6
Identity = 42/148 (28.38%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQG---VVFRGLP-PGVQPAVAFYGRDKAVRFLGYQDD 999
            W+  +  +  G+E TC+G  R P++D  ++ S D+W V C +G  + +G  S        +V  IH G++V F   +     GTV                   + ++ EPQ     VF GL    + PAV  Y RDK +RF  ++ +
Sbjct:  340 WEFEIVSDNHGDEQTCVGFVRRPVSDHRYQNSDDMWMVRCYNGGVYHNGMSS--------SVSNIHPGNVVRF---KANMTAGTV------------------HMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFKTE 458
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A0A5A8CKN7_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKN7_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 9.020e-6
Identity = 42/148 (28.38%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQG---VVFRGLP-PGVQPAVAFYGRDKAVRFLGYQDD 999
            W+  +  +  G+E TC+G  R P++D  ++ S D+W V C +G  + +G  S        +V  IH G++V F   +     GTV                   + ++ EPQ     VF GL    + PAV  Y RDK +RF  ++ +
Sbjct:  411 WEFEIVSDNHGDEQTCVGFVRRPVSDHRYQNSDDMWMVRCYNGGVYHNGMSS--------SVSNIHPGNVVRF---KANMTAGTV------------------HMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFKTE 529
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A7RSK5_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RSK5_NEMVE)

HSP 1 Score: 57.4 bits (137), Expect = 1.900e-5
Identity = 36/131 (27.48%), Postives = 56/131 (42.75%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQGVVFRGLPPG-VQPAVAFY 957
            W+  + +E  G E TC+GV R+P+TD  HR+S D+W     SG  + +G ++         +     GD +T +L+                       + +L+   NGE   V F G+    V P V FY
Sbjct:   32 WKFHIAKENRGNEGTCVGVARYPITDDSHRSSPDMWLYRAYSGNLYHNGEQN-------LTLSGYTQGDFLTCVLDM---------------------EARTLAFGKNGEEPRVAFEGIDATEVYPCVMFY 134
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: UPI00109B91FA (probable E3 ubiquitin-protein ligase HERC1 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B91FA)

HSP 1 Score: 57.8 bits (138), Expect = 4.170e-5
Identity = 38/131 (29.01%), Postives = 55/131 (41.98%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEPQGVVFRGLPPG-VQPAVAFY 957
            W+  + +E  G E TC+GV R+P+TD  HRT+ D+W     SG  + +G +S           P +                    T+GD  +      + +LSL  NGE   V F G+    V P   FY
Sbjct: 1953 WKFHITKENRGNEGTCVGVARYPITDDSHRTTRDMWLYRAYSGNLYHNGEQS--------LTLPGY--------------------TQGDYIICVLDMEAGTLSLGKNGEELRVAFDGIDAKEVYPCAMFY 2055
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BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Match: A0A6P7TDC8_OCTVU (probable E3 ubiquitin-protein ligase HERC1 isoform X2 n=9 Tax=Octopus TaxID=6643 RepID=A0A6P7TDC8_OCTVU)

HSP 1 Score: 57.0 bits (136), Expect = 7.250e-5
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 1 
Query:  568 WQLRLERETDGEETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGXXXXXXXAVWPIHNGDLVTFILE 795
            W+  + +E  G E TC+GV RWP+TD C  T+ D+W     SG  + +G +S         +     GD +T +L+
Sbjct: 1974 WKFLIVKENSGNEGTCVGVSRWPVTDYCQSTTTDMWLYRAYSGNVYHNGEQS-------VTLPGYSQGDYITVLLD 2042
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12675.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KD94_9PHAE5.700e-1641.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVC4_ECTSI1.020e-1540.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6F9DED7_9ASCI4.540e-632.33Probable E3 ubiquitin-protein ligase HERC1 n=1 Tax... [more]
A0A7S0JWR0_CAFRO6.410e-628.38Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CKN7_CAFRO9.020e-628.38Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A7RSK5_NEMVE1.900e-527.48Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
UPI00109B91FA4.170e-529.01probable E3 ubiquitin-protein ligase HERC1 isoform... [more]
A0A6P7TDC8_OCTVU7.250e-532.89probable E3 ubiquitin-protein ligase HERC1 isoform... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12675contigP-wetherbeei_contig12675:5..1336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVC4
Preferred nameHERC1
PFAMsCLTH,HECT,RCC1,SPRY,WD40
Model size1332
Max annot lvl2759|Eukaryota
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue1.67e-16
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
EC2.3.2.26
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Cds size1332
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.4077456-CDS-P-wetherbeei_contig12675:4..13361683185956.4077456-CDS-P-wetherbeei_contig12675:4..1336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12675 5..1336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12675.1.1prot_P-wetherbeei_contig12675.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12675 5..1336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12675.1.1

>prot_P-wetherbeei_contig12675.1.1 ID=prot_P-wetherbeei_contig12675.1.1|Name=mRNA_P-wetherbeei_contig12675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=444bp
VALAGFGAPAAAESPTSDVKPAARAAAALSAAREEAAEAEAAADEWRKLS
DDGLCGLTEALAATTAKTATTAAAGASATAHTATTAAAAASGSRSGVADA
GAATSARAIGLPGGGGFRATACSRNVSIQEGGAVCASTDRSPGYALVAYE
PSTEPAGEGSASDGRGIDDGGGGAGPDDRWRRQWRRRRRWQLRLERETDG
EETTCIGVGRWPLTDPCHRTSGDLWTVCCRSGEAFRDGGRSGGGGGGAAA
VWPIHNGDLVTFILEEGEEKGGTVATEGDRAVLPSSERSLSLSLEVNGEP
QGVVFRGLPPGVQPAVAFYGRDKAVRFLGYQDDTAAVATLPPASGALAGE
TDPDDADGASADAGGADEMASFTHGRAENLHRDEACTPAAKLLEAVAVLA
RLHLPVPTVTEGSAAAVGSCSTNDGAVPPPSSPVALPSASGGGV
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mRNA from alignment at P-wetherbeei_contig12675:5..1336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12675.1.1 ID=mRNA_P-wetherbeei_contig12675.1.1|Name=mRNA_P-wetherbeei_contig12675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1332bp|location=Sequence derived from alignment at P-wetherbeei_contig12675:5..1336- (Phaeothamnion wetherbeei SAG_119_79)
GTAGCGTTGGCGGGGTTTGGGGCGCCTGCGGCCGCAGAGTCGCCAACATC
GGATGTGAAGCCAGCGGCGCGAGCGGCGGCGGCATTGTCGGCGGCGCGGG
AAGAGGCAGCTGAGGCCGAGGCGGCGGCGGACGAGTGGAGGAAATTGTCA
GACGACGGCCTCTGCGGGCTGACGGAGGCCCTGGCCGCCACCACCGCTAA
GACGGCGACGACCGCTGCTGCTGGTGCTTCCGCAACAGCACATACCGCCA
CCACTGCCGCCGCCGCTGCGTCCGGCAGCCGCTCGGGCGTCGCCGATGCT
GGCGCCGCCACCTCGGCCCGCGCCATCGGTCTTCCGGGCGGCGGCGGCTT
CCGCGCGACGGCCTGCAGCCGCAACGTGTCCATTCAGGAGGGCGGGGCGG
TCTGCGCGAGCACCGACCGCTCTCCCGGCTACGCCCTCGTGGCATACGAG
CCATCAACGGAACCGGCTGGGGAAGGCAGCGCCAGCGACGGCAGAGGCAT
CGACGACGGCGGCGGCGGAGCGGGCCCGGACGATCGGTGGCGGCGGCAGT
GGCGGCGCCGCCGGCGGTGGCAGTTGCGCCTGGAGCGCGAGACGGATGGC
GAGGAAACGACGTGCATCGGCGTCGGGCGGTGGCCCTTGACGGATCCATG
CCACCGGACCAGCGGCGACCTGTGGACGGTCTGCTGTCGCAGCGGCGAGG
CATTCCGCGACGGCGGCCGCTCTGGGGGCGGCGGCGGGGGCGCCGCGGCA
GTCTGGCCGATCCACAACGGGGACCTTGTCACCTTCATTTTGGAAGAAGG
GGAGGAGAAGGGCGGCACCGTTGCCACCGAAGGTGACAGGGCGGTTCTTC
CCTCCAGCGAGCGGAGCCTCAGCCTCAGCCTCGAGGTCAACGGCGAACCG
CAAGGGGTTGTCTTTCGAGGCCTGCCACCCGGCGTCCAGCCGGCGGTCGC
CTTTTACGGGCGCGACAAGGCTGTCCGTTTCTTGGGTTACCAGGACGACA
CGGCGGCAGTGGCAACCTTGCCGCCGGCATCCGGTGCGCTCGCCGGCGAG
ACCGATCCCGATGATGCCGATGGCGCCTCAGCCGACGCGGGCGGCGCCGA
TGAAATGGCCTCATTCACGCACGGACGGGCAGAAAACTTGCACCGCGACG
AGGCGTGCACGCCTGCGGCGAAACTGCTAGAGGCGGTGGCAGTCCTGGCG
CGCTTGCATCTCCCGGTGCCGACAGTCACTGAGGGCTCCGCCGCCGCCGT
TGGCAGCTGCTCCACCAACGACGGAGCGGTGCCGCCACCTTCGTCGCCGG
TGGCACTGCCTTCTGCGAGTGGCGGGGGGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12675:5..1336-

>mRNA_P-wetherbeei_contig12675.1.1 ID=mRNA_P-wetherbeei_contig12675.1.1|Name=mRNA_P-wetherbeei_contig12675.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1332bp|location=Sequence derived from alignment at P-wetherbeei_contig12675:5..1336- (Phaeothamnion wetherbeei SAG_119_79)
GTAGCGTTGGCGGGGTTTGGGGCGCCTGCGGCCGCAGAGTCGCCAACATC
GGATGTGAAGCCAGCGGCGCGAGCGGCGGCGGCATTGTCGGCGGCGCGGG
AAGAGGCAGCTGAGGCCGAGGCGGCGGCGGACGAGTGGAGGAAATTGTCA
GACGACGGCCTCTGCGGGCTGACGGAGGCCCTGGCCGCCACCACCGCTAA
GACGGCGACGACCGCTGCTGCTGGTGCTTCCGCAACAGCACATACCGCCA
CCACTGCCGCCGCCGCTGCGTCCGGCAGCCGCTCGGGCGTCGCCGATGCT
GGCGCCGCCACCTCGGCCCGCGCCATCGGTCTTCCGGGCGGCGGCGGCTT
CCGCGCGACGGCCTGCAGCCGCAACGTGTCCATTCAGGAGGGCGGGGCGG
TCTGCGCGAGCACCGACCGCTCTCCCGGCTACGCCCTCGTGGCATACGAG
CCATCAACGGAACCGGCTGGGGAAGGCAGCGCCAGCGACGGCAGAGGCAT
CGACGACGGCGGCGGCGGAGCGGGCCCGGACGATCGGTGGCGGCGGCAGT
GGCGGCGCCGCCGGCGGTGGCAGTTGCGCCTGGAGCGCGAGACGGATGGC
GAGGAAACGACGTGCATCGGCGTCGGGCGGTGGCCCTTGACGGATCCATG
CCACCGGACCAGCGGCGACCTGTGGACGGTCTGCTGTCGCAGCGGCGAGG
CATTCCGCGACGGCGGCCGCTCTGGGGGCGGCGGCGGGGGCGCCGCGGCA
GTCTGGCCGATCCACAACGGGGACCTTGTCACCTTCATTTTGGAAGAAGG
GGAGGAGAAGGGCGGCACCGTTGCCACCGAAGGTGACAGGGCGGTTCTTC
CCTCCAGCGAGCGGAGCCTCAGCCTCAGCCTCGAGGTCAACGGCGAACCG
CAAGGGGTTGTCTTTCGAGGCCTGCCACCCGGCGTCCAGCCGGCGGTCGC
CTTTTACGGGCGCGACAAGGCTGTCCGTTTCTTGGGTTACCAGGACGACA
CGGCGGCAGTGGCAACCTTGCCGCCGGCATCCGGTGCGCTCGCCGGCGAG
ACCGATCCCGATGATGCCGATGGCGCCTCAGCCGACGCGGGCGGCGCCGA
TGAAATGGCCTCATTCACGCACGGACGGGCAGAAAACTTGCACCGCGACG
AGGCGTGCACGCCTGCGGCGAAACTGCTAGAGGCGGTGGCAGTCCTGGCG
CGCTTGCATCTCCCGGTGCCGACAGTCACTGAGGGCTCCGCCGCCGCCGT
TGGCAGCTGCTCCACCAACGACGGAGCGGTGCCGCCACCTTCGTCGCCGG
TGGCACTGCCTTCTGCGAGTGGCGGGGGGGTT
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