mRNA_P-wetherbeei_contig12652.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12652.1.1
Unique NamemRNA_P-wetherbeei_contig12652.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A7S1AQ46_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AQ46_NOCSC)

HSP 1 Score: 74.3 bits (181), Expect = 4.690e-13
Identity = 39/119 (32.77%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAW-SIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR +L  +T++ A  DL+H+  VF+ I   +AV G ++FG  + E  T W A  T    +MG+  W +++++       W    F   +++L++N+L+AI++DAY+  +G   D +TLW
Sbjct:  467 PRLSLFTRTLSAARGDLLHFLVVFISIFLTYAVSGVLLFGRNMEEFATFWRAITTCYRFMMGDFHWEALSHTGRIEAGFWF-MSFMIFIVMLMLNMLLAIVMDAYSDQKGKSTDSETLW 584          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A813CIA4_9DINO (Pkd2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CIA4_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 5.440e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +L +T++ A VDL H+  VFL +   FAV G   FG    +  TL  A       +MGE  W+  +SL   + L     F FV +LL++N+LIAI++D YA  +      + LW
Sbjct:  417 PRLAILTRTLSAAAVDLFHFGLVFLSVFAAFAVMGTAFFGEDELQFSTLDRAASVLFFALMGEVRWTSIDSLGRPVALLFFAAFQFVGLLLMLNMLIAIMMDIYACTKSCATRSEPLW 534          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A812R5W0_SYMMI (Hecd-1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812R5W0_SYMMI)

HSP 1 Score: 71.2 bits (173), Expect = 5.770e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +L +T++ A VDL H+  VFL +   FAV G   FG    +  TL  A       +MGE  W+  +SL   + L     F FV +LL++N+LIAI++D YA  +      + LW
Sbjct:  115 PRLAILTRTLSAAAVDLFHFGLVFLSVFAAFAVMGTAFFGEDELQFSTLDRAASVLFFALMGEVRWTSIDSLGRPVALLFFAAFQFVGLLLMLNMLIAIMMDIYACTKSCATRSEPLW 232          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A812S7R8_9DINO (PKD2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812S7R8_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 7.830e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +L +T++ A VDL H+  VFL +   FAV G   FG    +  TL  A       +MGE  W+  +SL   + L     F FV +LL++N+LIAI++D YA  +      + LW
Sbjct:  467 PRLAILTRTLSAAAVDLFHFGLVFLSVFAAFAVMGTAFFGQDELQFSTLDRAASVLFFALMGEVRWTSIDSLGRPVALLFFGAFQFVGLLLMLNMLIAIMMDIYACTKSCATRSEPLW 584          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A812REI7_SYMPI (PKD2 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812REI7_SYMPI)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-11
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +L +T++ A VDL H++ VF  +   FAV G   FG       TL  A       +MGE  W+  +SL   + L     F FV +LL++N+LIAI++D YA  +      + LW
Sbjct:  273 PRLAILTRTLSAAAVDLFHFSLVFFCVFAAFAVMGTAFFGEDEVHFATLDRAASVLFFALMGEVQWTSIDSLGRPVKLLFVGAFQFVGLLLMLNMLIAIMMDIYACTKSCATRSEPLW 390          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A7S2NY79_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NY79_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 1.910e-10
Identity = 38/120 (31.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSM-LVVMGESAW-SIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +++ T+A ++VD++H+A VF   L  + + G  +FG R+ E  TL  A  T   +V+  E  W +++    Y   LW+   F  +V+L+++N+++AII+D Y   R S+   D+++
Sbjct:   27 PRLGMVINTLAGSVVDMLHFAVVFFPTLIAYVISGHFLFGRRLQEFSTLTAAAGTCFRIVIENEFDWDALSEEHFYTSALWIW-SFLLIVVLIMLNMVLAIILDIYNEVRASVDASDSIF 145          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A7S1K349_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K349_9ALVE)

HSP 1 Score: 63.9 bits (154), Expect = 1.960e-9
Identity = 37/119 (31.09%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVM-NLLIAIIIDAYAAARGSLKDRDTLW 360
            P  +++ KT++ ++ DL H+A VF  I    +  G + FGH+V    T   A  +S L++MG   W     +       +    F+V++ L+M N+L+AIII++Y   R  + +  TLW
Sbjct:  322 PMLSVVTKTLSASMKDLFHFAIVFFCIFFSLSFSGMLTFGHKVLYFNTFNQAMTSSFLLMMGWWQWEWLRGVEAESTTMMFIAIFYVIVRLMMVNILLAIIIESYFRVRSKVAEEYTLW 440          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A812NQN6_9DINO (PKD2 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812NQN6_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 2.870e-9
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHY-------------AAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  +L +T++ A VDL H+             A VFL +   FAV G   FG    +  TL  A       +MGE  W+  +SL   + L     F FV +LL++N+LIAI++D YA  +      + LW
Sbjct:  597 PRLAILTRTLSAAAVDLFHFGLGVLESSVGSADAQVFLSVFAAFAVMGTAFFGEDELQFSTLDRAASVLFFALMGEVRWTSIDSLGRPVALLFFAAFQFVGLLLMLNMLIAIMMDIYACTKSCATRSEPLW 727          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A2D4CIQ1_PYTIN (PKD_channel domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIQ1_PYTIN)

HSP 1 Score: 62.4 bits (150), Expect = 6.820e-9
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    1 FLPRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIAIIIDAYAAAR 330
            F PR N+L +TVA AL   + +  VF+ I   FA+ G  +FG RV E  TL +  ++ + ++ G    S+  S  Y+        +  VV L+++N+++AI++D Y+A R
Sbjct:  388 FHPRLNILTRTVARALHQFVGFFVVFVTIFAAFAIAGAALFGDRVKEFSTLDNTIKSCINMLFGSFDISVIESQPYQSGALFYWSYMIVVALVLLNMMLAIVVDTYSAIR 497          
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Match: A0A8J2A2W0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2A2W0_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 7.160e-9
Identity = 37/122 (30.33%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    7 PRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGTLWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFF----VVILLVMNLLIAIIIDAYAAARGSLKDRDTLW 360
            PR  ++  T+  A VD++H+  VF  +   +A+ G +VFG  + E  TL  +  T   +V G+  W   +    R+  W    FF+    +V+L+++N+L+AII+D Y   +G     +TL+
Sbjct:  586 PRLGVVTNTIINAAVDILHFLVVFSSVFFAYALAGVIVFGRHLQEFATLDVSLTTCWRLVFGDFDWERTS----RIAPWEAAVFFYSFTLLVVLIMLNMLLAIILDTYMDVKGQSTKAETLY 703          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12652.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1AQ46_NOCSC4.690e-1332.77Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A813CIA4_9DINO5.440e-1236.44Pkd2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A812R5W0_SYMMI5.770e-1236.44Hecd-1 protein n=2 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A812S7R8_9DINO7.830e-1236.44PKD2 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812REI7_SYMPI3.450e-1135.59PKD2 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A7S2NY79_9DINO1.910e-1031.67Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S1K349_9ALVE1.960e-931.09Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A812NQN6_9DINO2.870e-933.59PKD2 protein (Fragment) n=1 Tax=Symbiodinium necro... [more]
A0A2D4CIQ1_PYTIN6.820e-933.64PKD_channel domain-containing protein n=2 Tax=Pyth... [more]
A0A8J2A2W0_9DINO7.160e-930.33Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12652contigP-wetherbeei_contig12652:3..945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX47511
PFAMsC2,CUB,PKD_channel
Model size360
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons3
Evalue1.19e-09
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota
Descriptiondetection of mechanical stimulus
Cds size360
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.9486527-CDS-P-wetherbeei_contig12652:2..2171683185955.9486527-CDS-P-wetherbeei_contig12652:2..217Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12652 3..217 +
1683185955.9565034-CDS-P-wetherbeei_contig12652:662..7891683185955.9565034-CDS-P-wetherbeei_contig12652:662..789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12652 663..789 +
1683185955.9635415-CDS-P-wetherbeei_contig12652:927..9451683185955.9635415-CDS-P-wetherbeei_contig12652:927..945Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12652 928..945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12652.1.1prot_P-wetherbeei_contig12652.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12652 3..945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12652.1.1

>prot_P-wetherbeei_contig12652.1.1 ID=prot_P-wetherbeei_contig12652.1.1|Name=mRNA_P-wetherbeei_contig12652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
FLPRANLLVKTVAIALVDLIHYAAVFLFILGGFAVEGWMVFGHRVSELGT
LWDAFQTSMLVVMGESAWSIANSLSYRLPLWVGRGFFFVVILLVMNLLIA
IIIDAYAAARGSLKDRDTLW
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mRNA from alignment at P-wetherbeei_contig12652:3..945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12652.1.1 ID=mRNA_P-wetherbeei_contig12652.1.1|Name=mRNA_P-wetherbeei_contig12652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=943bp|location=Sequence derived from alignment at P-wetherbeei_contig12652:3..945+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGCCGCGCGCCAACCTGCTGGTCAAGACGGTCGCCATCGCCCTCGT GGACCTGATTCACTACGCCGCCGTCTTCCTTTTCATTCTGGGGGGCTTCG CCGTCGAGGGCTGGATGGTGTTCGGCCACCGGGTCAGCGAGCTCGGCACG CTGTGGGACGCATTCCAGACCAGCATGCTTGTCGTCATGGGTGAGTCCGC ATGGAGCATTGCCAAGTCACTGCCGCAGACATGCCGCAGTTGTGGCTGCT GCGTGCCGATGCTGGTCGCCATTCGCACTACCTCTCAAATATTTGTTTCG TTGGCACTCTAAGCGAAGCACTCGTCGACCTTATTTCACGTTAGCTGCCC CGTTTCGACACTGTCTTTCCTCCCCCGCTTCACTCCTTACACTCCTTCCT CTTCGCTCCTCCGTCATGGTATTGCAGGCGCGGCGGACACGACCACGCTG TACACGGAGATGATGGCAGTCAGCTCCGCGGTTACAATTCTCTGGTTCTG GTAAGCGAGAGCAGGCGAAATGATCTACGCCCTATTGCATGTAGCACTTC TCTTCTAGGAAATGAGAGAAGACCCAGTGTCGCCGTCACTTGGTGCCAGG CAAGTGGTTGCCTCGAGCTTTTTCTTCAGGTTCTTAGATCTGGCTGATTT ACCCGTCTAGCTCTCTTTCTTATCGCCTGCCTTTATGGGTCGGCAGGGGC TTCTTTTTCGTCGTGATCCTGCTGGTGATGAACCTGCTGATCGCCATCAT CATCGACGCGTACGCGGCAGCCCGAGGCAGCCTGAAGGTACTAAGAAAGT GTTACAGATGGCAATATCACTGGCCGCTCCGGCCGCTCATGCCGCCGCCG CCATGCCGCCGTCTGTCCCACAGCGCTGACAAGTGATTTCGCAGAATGCC CATCCCGTCTTCTTTTTCCCGCCAGGACCGAGACACCCTGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12652:3..945+

>mRNA_P-wetherbeei_contig12652.1.1 ID=mRNA_P-wetherbeei_contig12652.1.1|Name=mRNA_P-wetherbeei_contig12652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig12652:3..945+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGCCGCGCGCCAACCTGCTGGTCAAGACGGTCGCCATCGCCCTCGT
GGACCTGATTCACTACGCCGCCGTCTTCCTTTTCATTCTGGGGGGCTTCG
CCGTCGAGGGCTGGATGGTGTTCGGCCACCGGGTCAGCGAGCTCGGCACG
CTGTGGGACGCATTCCAGACCAGCATGCTTGTCGTCATGGGTGAGTCCGC
ATGGAGCATTGCCAACTCTCTTTCTTATCGCCTGCCTTTATGGGTCGGCA
GGGGCTTCTTTTTCGTCGTGATCCTGCTGGTGATGAACCTGCTGATCGCC
ATCATCATCGACGCGTACGCGGCAGCCCGAGGCAGCCTGAAGGACCGAGA
CACCCTGTGG
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