mRNA_P-wetherbeei_contig12651.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12651.1.1
Unique NamemRNA_P-wetherbeei_contig12651.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A835ZBS8_9STRA (Chloroplast 30S ribosomal protein 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.490e-9
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRK 111
            VESA+TRF+RAV R+GH+ ELK+RR+FETTQ R+KRK
Sbjct:   54 VESALTRFKRAVGRSGHMQELKYRRYFETTQERKKRK 90
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7R9W5B5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5B5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-7
Identity = 24/40 (60.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL EL+HRRFFE +Q ++KRK+ Q
Sbjct:   50 IESALRRFKREVNKSGHLMELRHRRFFENSQEKKKRKIVQ 89
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S2UNK4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNK4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.440e-7
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL EL+H+R+FE TQ ++KRK+ Q
Sbjct:   66 IESALRRFKREVNKSGHLMELRHKRYFENTQEKKKRKIVQ 105
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S2RCI3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RCI3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.450e-7
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL EL+HRR FE +Q R+KRK+ Q
Sbjct:   53 IESALRRFKREVNKSGHLMELRHRRHFENSQERKKRKIVQ 92
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: B8BSD7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSD7_THAPS)

HSP 1 Score: 49.3 bits (116), Expect = 9.620e-7
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL +L+H+R+FE +Q R+KRK+ Q
Sbjct:   10 IESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQ 49
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S1Z7E6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7E6_TRICV)

HSP 1 Score: 50.1 bits (118), Expect = 1.190e-6
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL EL+H+R+FE +Q ++KRK+ Q
Sbjct:   53 IESALRRFKREVNKSGHLMELRHKRYFENSQEKKKRKLTQ 92
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S2Q4E9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4E9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.250e-6
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL +L+H+R+FE +Q R+KRK+ Q
Sbjct:   49 IESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQ 88
[Close]
BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S2REA8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REA8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.890e-6
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            +ESA+ RF+R VN++GHL +L+H+R+FE +Q R+KRK+ Q
Sbjct:   62 IESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQ 101
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BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A8J9S2B3_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S2B3_PHATR)

HSP 1 Score: 47.8 bits (112), Expect = 3.190e-6
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKM 114
            +ESA+ RF+R VN++GHL EL+H+R+FE +Q R KRK+
Sbjct:   21 IESALRRFKREVNKSGHLMELRHKRYFENSQERIKRKV 58
[Close]
BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Match: A0A7S0GHG0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHG0_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 1.610e-5
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ 120
            VES I RF+R VN++GHL +L+H+R FE +Q R+KRK+ Q
Sbjct:   64 VESIIRRFKREVNKSGHLMDLRHKRHFENSQQRKKRKIVQ 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12651.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835ZBS8_9STRA9.490e-972.97Chloroplast 30S ribosomal protein 21 n=1 Tax=Tribo... [more]
A0A7R9W5B5_9STRA1.980e-760.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2UNK4_9STRA5.440e-757.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2RCI3_9STRA8.450e-760.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8BSD7_THAPS9.620e-755.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1Z7E6_TRICV1.190e-655.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2Q4E9_9STRA2.250e-655.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2REA8_9STRA2.890e-655.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J9S2B3_PHATR3.190e-657.89Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S0GHG0_9STRA1.610e-557.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12651contigP-wetherbeei_contig12651:18..137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps31446
PFAMsRibosomal_S21
Model size120
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.58e-07
EggNOG OGs2E8X3@1|root,2QZEU@2759|Eukaryota,2XHKA@2836|Bacillariophyta
DescriptionRibosomal protein S21
Cds size120
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.88037-CDS-P-wetherbeei_contig12651:17..1371683185955.88037-CDS-P-wetherbeei_contig12651:17..137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12651 18..137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12651.1.1prot_P-wetherbeei_contig12651.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12651 18..137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12651.1.1

>prot_P-wetherbeei_contig12651.1.1 ID=prot_P-wetherbeei_contig12651.1.1|Name=mRNA_P-wetherbeei_contig12651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
VESAITRFRRAVNRAGHLGELKHRRFFETTQAREKRKMAQ
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mRNA from alignment at P-wetherbeei_contig12651:18..137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12651.1.1 ID=mRNA_P-wetherbeei_contig12651.1.1|Name=mRNA_P-wetherbeei_contig12651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig12651:18..137- (Phaeothamnion wetherbeei SAG_119_79)
GTCGAGTCTGCGATCACGCGCTTTCGCCGCGCCGTCAACCGAGCGGGCCA
CCTGGGGGAGCTCAAGCACCGACGCTTCTTCGAGACGACGCAGGCGCGCG
AGAAGCGCAAGATGGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12651:18..137-

>mRNA_P-wetherbeei_contig12651.1.1 ID=mRNA_P-wetherbeei_contig12651.1.1|Name=mRNA_P-wetherbeei_contig12651.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig12651:18..137- (Phaeothamnion wetherbeei SAG_119_79)
GTCGAGTCTGCGATCACGCGCTTTCGCCGCGCCGTCAACCGAGCGGGCCA
CCTGGGGGAGCTCAAGCACCGACGCTTCTTCGAGACGACGCAGGCGCGCG
AGAAGCGCAAGATGGCGCAG
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