mRNA_P-wetherbeei_contig12647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12647.1.1
Unique NamemRNA_P-wetherbeei_contig12647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12647.1.1 vs. uniprot
Match: A0A7Z9U8Z9_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9U8Z9_9BACT)

HSP 1 Score: 497 bits (1279), Expect = 2.740e-174
Identity = 241/346 (69.65%), Postives = 294/346 (84.97%), Query Frame = 1
Query:   34 LMAYVDEFRGDSRAWTTLAQLQIQSGDFEDAISTLKSALSSDSKNAQALWDLGRLYVRMGRSREAVGYYELIINDPAEKKSVRRAIERTLADLYFKTGNYNEALELYQREPESNMRMIAPIYEALGDLATAEDLYLRSVKQAPRDARTHLGIAEYWVRRENWPNAASAGRDGLKCTYATEEVHSNLAVALATAQMKERQFEDALKTMDEICQAYPDSVHQLFRKVKILKMLNRNEEAMNSAKDVRRSAEYQTGCAPASSSLWSLLGDCNVWLGDIPGAKDSYSNALRYDFMDSAAVRGLGMVADKEKDHAKAYEMYERFVVLDPLNLATPAIKSMIRELREKLTPE 1071
            L  ++ ++RGDSRAWT LA+ QIQ G+FE AI TLKSAL +DS+N+QALW+LGRLYVRMGRS++AV YY  II DP EK+SVRRAIER LADLYF+TG Y E+LE+YQRE ESN+ MIAPIYEA+ +L TAE+LYLRSV Q+PRDAR+HLG+AEYWVRRE W  A  + + GL+CTYATE+VHSNLAVALAT+QM+  Q E A +TM+EICQ YPDS+HQ+FRKVKIL ML R EEA+  A++VR SAE+QTGCAPA SSLWSLLGDC+  LG+I  A+++YSNAL+YDFMDS AVRGLG+VA+K+KDHA+A EMY+RFV+LDPLNLATP I++ I ELREK+ P+
Sbjct:    1 LQTHLQDYRGDSRAWTILARQQIQGGEFEKAIETLKSALRADSRNSQALWELGRLYVRMGRSQDAVDYYSEIIYDPNEKRSVRRAIERALADLYFRTGRYRESLEIYQRELESNLAMIAPIYEAVEELETAEELYLRSVVQSPRDARSHLGLAEYWVRREEWHKAIESAKKGLECTYATEDVHSNLAVALATSQMRTDQIESAYQTMEEICQTYPDSIHQVFRKVKILVMLKRREEALALAEEVRSSAEHQTGCAPAESSLWSLLGDCHSLLGNIKAAEEAYSNALKYDFMDSIAVRGLGIVAEKQKDHARALEMYQRFVLLDPLNLATPTIRNRIEELREKVGPQ 346          
BLAST of mRNA_P-wetherbeei_contig12647.1.1 vs. uniprot
Match: A0A7X8XPI4_9BURK (Tetratricopeptide repeat protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPI4_9BURK)

HSP 1 Score: 439 bits (1130), Expect = 4.120e-149
Identity = 220/353 (62.32%), Postives = 275/353 (77.90%), Query Frame = 1
Query:    1 WQKLSKTFMAELMAYVDEFRGDSRAWTTLAQLQIQSGDFEDAISTLKSALSSDSKNAQALWDLGRLYVRMGRSREAVGYYELIINDPAEKKSVRRAIERTLADLYFKTGNYNEALELYQREPESNMRMIAPIYEALGDLATAEDLYLRSVKQAPRDARTHLGIAEYWVRRENWPNAASAGRDGLKCTYATEEVHSNLAVALATAQMKERQFEDALKTMDEICQAYPDSVHQLFRKVKILKMLNRNEEAMNSAKDVRRSAEYQTGCAPASSSLWSLLGDCNVWLGDIPGAKDSYSNALRYDFMDSAAVRGLGMVADKEKDHAKAYEMYERFVVLDPLNLATPAIKSMIRELREK 1059
            W+ L+++ +  L   V E RGD+RAW  LA LQIQ+G FE+AISTLK +L +DSKNAQALW                 YY+ IINDP+EKKSVRRAIER LA+LYFK G+Y EALE+Y RE ESN+RMIAPIYEA+G+L  A+ LYL+SV QAPRDA+ HLG+AEYWVRRENWP AA A R+GL CTYATEEVHSNLAVALATAQMK  Q  +AL+TM+EIC AYPDS+HQ+FRKVK++ +  R +EAM  A++VR SA++QTGCAP+SS+LW+LLGD    LG I  A+ +Y+ AL+YD MD+ AVRGLG++A+K+ + A+A ++YERFVVLDPLNLATP I+  I+ L+ K
Sbjct:  102 WRALNESLIKSLSKAVREARGDTRAWNMLANLQIQAGRFEEAISTLKDSLRADSKNAQALWXXXXXXXXXXXXXXXXXYYQDIINDPSEKKSVRRAIERALAELYFKLGHYPEALEIYLREEESNIRMIAPIYEAVGELEEAQALYLKSVAQAPRDAKGHLGLAEYWVRRENWPQAAEAAREGLHCTYATEEVHSNLAVALATAQMKMSQVNEALQTMEEICVAYPDSIHQIFRKVKLILLQGRKDEAMRLAEEVRVSAQHQTGCAPSSSTLWTLLGDTCSLLGRIDEAEQAYTQALKYDAMDATAVRGLGILAEKQGNLAQALDLYERFVVLDPLNLATPTIRQRIKTLQAK 454          
BLAST of mRNA_P-wetherbeei_contig12647.1.1 vs. uniprot
Match: A0A355TRP9_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TRP9_9BACT)

HSP 1 Score: 410 bits (1054), Expect = 3.920e-135
Identity = 204/359 (56.82%), Postives = 264/359 (73.54%), Query Frame = 1
Query:    1 WQKLSKTFMAELMAYVDEFRGDSRAWTTLAQLQIQSGDFEDAISTLKSALSSDSKNAQALWDLGRLYVRMGRSREAVGYYELIINDPAEKKSVRRAIERTLADLYFKTGNYNEALELYQREPESNMRMIAPIYEALGDLATAEDLYLRSVKQAPRDARTHLGIAEYWVRRENWPNAASAGRDGLKCTYATEEVHSNLAVALATAQMKERQFEDALKTMDEICQAYPDSVHQLFRKVKILKMLNRNEEAMNSAKDVRRSAEYQTGCAPASSSLWSLLGDCNVWLGDIPGAKDSYSNALRYDFMDSAAVRGLGMVADKEKDHAKAYEMYERFVVLDPLNLATPAIKSMIRELREKLTPEQL 1077
            W KLS  F+AEL   V + R + R W  LA  QIQ+G F+DAI TLK ALS+DSKNAQALW+LGRLYVR G ++ A+ YY  I+ DP E+KS+RR IE+ LA+LYFK G Y+EAL +Y  + ++N  MIAPI EA G ++ A+ LY++SV Q+PRDA+ HLG+AEYWVR+ NW  A  A +DGL+C YATEEVH+NLAVALATA MK  QFE AL+ M EIC+ YPDS+H +FRKVK+L +L R  EA   A++VR+SAE+QTGCAPASS LWSLLGD          A+ +Y+ A++YD M++ AVRGL ++A+ + D  +AY  Y++FV L+PLNLATP +K  +  +  KLTPEQL
Sbjct:  275 WAKLSTEFIAELKDQVAKDRTNQRTWNLLATQQIQAGLFDDAIVTLKDALSADSKNAQALWELGRLYVRRGEAQNAIDYYRDIVEDPNERKSIRRGIEKALAELYFKLGMYDEALTIYMSDEDNNAAMIAPILEATGQMSEAQALYIKSVAQSPRDAKCHLGLAEYWVRQGNWDKAIQASKDGLECNYATEEVHTNLAVALATAYMKLGQFEAALQAMYEICELYPDSIHCVFRKVKLLLLLKRGREAAQLAEEVRQSAEHQTGCAPASSVLWSLLGDTCSLAHREAEAEHAYTQAVKYDAMNATAVRGLAILAEHKGDLIRAYSGYKKFVTLEPLNLATPVVKKFLERIASKLTPEQL 633          
BLAST of mRNA_P-wetherbeei_contig12647.1.1 vs. uniprot
Match: UPI00037FC921 (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Colwellia piezophila TaxID=211668 RepID=UPI00037FC921)

HSP 1 Score: 56.2 bits (134), Expect = 6.400e-5
Identity = 52/191 (27.23%), Postives = 85/191 (44.50%), Query Frame = 1
Query:   43 YVDEFRGDSRAWTTLAQLQIQSGDFEDAISTLKSALSSDSKNAQALWDLGRLYVRMGRSREAVGYYELIINDPAEKKSVRRAIERTLA-DLYFKTGNYNEALELYQREPESNMRMIAPI-----YEALGDLATAEDLYLRSVKQAPR-DARTHLGIAEYWVRRENWPNAASAGRDGLKCTYATEEVHSNLA 594
            YVDE    + A + LA  QI + D   AIS+LK +LS D++       L +L +  G+   A    ++I       K    A+   LA DL+FK G Y +AL LYQR    N    + +     Y+ L  L  AE L    +  + + + +  + +A+ +  +       +   + LK    +  + +NLA
Sbjct:  646 YVDEENNRAYALSILANAQITANDINGAISSLKKSLSWDNEVVATHILLTKLLMASGKVEAAAKQIKII-----RSKDKEGAVADLLAGDLFFKQGQYAQALPLYQRALSINPSTASILALYRTYKKLNKLNKAERLLTSQIDSSEQLELKFVIALADVYQLQNKHEKVTNLYHNALKVYSDSPALLNNLA 831          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7Z9U8Z9_9BACT2.740e-17469.65Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A7X8XPI4_9BURK4.120e-14962.32Tetratricopeptide repeat protein n=1 Tax=Burkholde... [more]
A0A355TRP9_9BACT3.920e-13556.82Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
UPI00037FC9216.400e-527.23PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12647contigP-wetherbeei_contig12647:1..1077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog290397.Adeh_3311
Preferred nameagmK
PFAMsPkinase,TPR_16,TPR_19,TPR_6,TPR_7,TPR_8
Model size1077
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-06
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1MVIW@1224|Proteobacteria,437VP@68525|delta/epsilon subdivisions,2WWNT@28221|Deltaproteobacteria,2YUC4@29|Myxococcales
Descriptionrepeat protein
Cds size1053
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.718255-UTR-P-wetherbeei_contig12647:0..241683185955.718255-UTR-P-wetherbeei_contig12647:0..24Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12647 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.7298472-CDS-P-wetherbeei_contig12647:24..10771683185955.7298472-CDS-P-wetherbeei_contig12647:24..1077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12647 25..1077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12647.1.1prot_P-wetherbeei_contig12647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12647 25..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12647.1.1

>prot_P-wetherbeei_contig12647.1.1 ID=prot_P-wetherbeei_contig12647.1.1|Name=mRNA_P-wetherbeei_contig12647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=351bp
MAELMAYVDEFRGDSRAWTTLAQLQIQSGDFEDAISTLKSALSSDSKNAQ
ALWDLGRLYVRMGRSREAVGYYELIINDPAEKKSVRRAIERTLADLYFKT
GNYNEALELYQREPESNMRMIAPIYEALGDLATAEDLYLRSVKQAPRDAR
THLGIAEYWVRRENWPNAASAGRDGLKCTYATEEVHSNLAVALATAQMKE
RQFEDALKTMDEICQAYPDSVHQLFRKVKILKMLNRNEEAMNSAKDVRRS
AEYQTGCAPASSSLWSLLGDCNVWLGDIPGAKDSYSNALRYDFMDSAAVR
GLGMVADKEKDHAKAYEMYERFVVLDPLNLATPAIKSMIRELREKLTPEQ
L
back to top

mRNA from alignment at P-wetherbeei_contig12647:1..1077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12647.1.1 ID=mRNA_P-wetherbeei_contig12647.1.1|Name=mRNA_P-wetherbeei_contig12647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig12647:1..1077+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCAAAAGCTGAGCAAAACTTTTATGGCCGAACTCATGGCTTATGTCGA CGAGTTCCGCGGCGATTCTCGCGCCTGGACCACATTGGCCCAGCTGCAGA TTCAGTCGGGCGACTTCGAAGACGCCATTTCAACTCTAAAGTCAGCCCTC TCTTCCGATTCCAAGAACGCCCAGGCGCTCTGGGACCTGGGTCGCCTCTA CGTCCGTATGGGACGCAGTCGCGAAGCCGTCGGCTACTACGAATTGATCA TCAACGACCCGGCCGAAAAGAAGTCCGTGCGTCGCGCCATCGAGCGCACG CTTGCCGACCTCTACTTCAAAACGGGCAATTACAACGAGGCGCTCGAGCT CTACCAGCGCGAGCCCGAGTCCAACATGCGAATGATCGCTCCCATTTACG AAGCGCTCGGAGATCTGGCCACGGCCGAGGACCTCTACCTCCGCTCCGTC AAACAGGCTCCGCGCGACGCGCGCACCCATCTCGGCATCGCCGAGTATTG GGTTCGCCGAGAAAACTGGCCCAACGCCGCCTCGGCCGGTCGTGACGGTC TCAAGTGTACCTATGCGACCGAAGAAGTCCACTCCAATCTCGCGGTAGCC CTTGCGACCGCGCAGATGAAGGAGAGACAGTTCGAAGACGCCCTCAAAAC GATGGACGAGATCTGCCAGGCCTATCCCGATTCGGTGCATCAGCTCTTCC GCAAGGTCAAAATCCTCAAGATGCTCAATCGCAATGAGGAAGCCATGAAT TCCGCCAAAGACGTACGTCGTTCGGCAGAGTACCAGACGGGTTGCGCCCC GGCCTCCTCCTCTTTGTGGAGCCTGCTCGGCGATTGCAACGTCTGGCTCG GAGACATCCCGGGTGCCAAGGATTCCTACTCCAACGCTCTCCGCTACGAC TTCATGGATTCTGCGGCCGTGCGCGGACTTGGTATGGTCGCCGATAAGGA AAAAGACCACGCTAAAGCATACGAGATGTATGAGCGCTTCGTCGTTCTCG ACCCGCTCAATCTCGCTACGCCCGCAATCAAGAGCATGATTCGCGAACTT CGCGAGAAATTGACGCCCGAGCAGCTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12647:1..1077+

>mRNA_P-wetherbeei_contig12647.1.1 ID=mRNA_P-wetherbeei_contig12647.1.1|Name=mRNA_P-wetherbeei_contig12647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1053bp|location=Sequence derived from alignment at P-wetherbeei_contig12647:1..1077+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAACTCATGGCTTATGTCGACGAGTTCCGCGGCGATTCTCGCGC
CTGGACCACATTGGCCCAGCTGCAGATTCAGTCGGGCGACTTCGAAGACG
CCATTTCAACTCTAAAGTCAGCCCTCTCTTCCGATTCCAAGAACGCCCAG
GCGCTCTGGGACCTGGGTCGCCTCTACGTCCGTATGGGACGCAGTCGCGA
AGCCGTCGGCTACTACGAATTGATCATCAACGACCCGGCCGAAAAGAAGT
CCGTGCGTCGCGCCATCGAGCGCACGCTTGCCGACCTCTACTTCAAAACG
GGCAATTACAACGAGGCGCTCGAGCTCTACCAGCGCGAGCCCGAGTCCAA
CATGCGAATGATCGCTCCCATTTACGAAGCGCTCGGAGATCTGGCCACGG
CCGAGGACCTCTACCTCCGCTCCGTCAAACAGGCTCCGCGCGACGCGCGC
ACCCATCTCGGCATCGCCGAGTATTGGGTTCGCCGAGAAAACTGGCCCAA
CGCCGCCTCGGCCGGTCGTGACGGTCTCAAGTGTACCTATGCGACCGAAG
AAGTCCACTCCAATCTCGCGGTAGCCCTTGCGACCGCGCAGATGAAGGAG
AGACAGTTCGAAGACGCCCTCAAAACGATGGACGAGATCTGCCAGGCCTA
TCCCGATTCGGTGCATCAGCTCTTCCGCAAGGTCAAAATCCTCAAGATGC
TCAATCGCAATGAGGAAGCCATGAATTCCGCCAAAGACGTACGTCGTTCG
GCAGAGTACCAGACGGGTTGCGCCCCGGCCTCCTCCTCTTTGTGGAGCCT
GCTCGGCGATTGCAACGTCTGGCTCGGAGACATCCCGGGTGCCAAGGATT
CCTACTCCAACGCTCTCCGCTACGACTTCATGGATTCTGCGGCCGTGCGC
GGACTTGGTATGGTCGCCGATAAGGAAAAAGACCACGCTAAAGCATACGA
GATGTATGAGCGCTTCGTCGTTCTCGACCCGCTCAATCTCGCTACGCCCG
CAATCAAGAGCATGATTCGCGAACTTCGCGAGAAATTGACGCCCGAGCAG
CTT
back to top