mRNA_P-wetherbeei_contig12629.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12629.1.1
Unique NamemRNA_P-wetherbeei_contig12629.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12629.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12629contigP-wetherbeei_contig12629:1069..1795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size727
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.1481733-UTR-P-wetherbeei_contig12629:1068..13571683185955.1481733-UTR-P-wetherbeei_contig12629:1068..1357Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12629 1069..1357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185955.1581516-CDS-P-wetherbeei_contig12629:1357..17951683185955.1581516-CDS-P-wetherbeei_contig12629:1357..1795Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12629 1358..1795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12629.1.1prot_P-wetherbeei_contig12629.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12629 1358..1795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12629.1.1

>prot_P-wetherbeei_contig12629.1.1 ID=prot_P-wetherbeei_contig12629.1.1|Name=mRNA_P-wetherbeei_contig12629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
MLPRRPPSDACLSARPPFWLRHAAPPLGCRFAQTCCDVQSERERGNIDAP
RRKREASASQRKIQERQPASPVARFLAHHSSTARALTRPQGRTWWEVKKR
ALVFFALRLQWKQLRTPARPERAAHDRMARSEVLGGNRGGASLAA*
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mRNA from alignment at P-wetherbeei_contig12629:1069..1795-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12629.1.1 ID=mRNA_P-wetherbeei_contig12629.1.1|Name=mRNA_P-wetherbeei_contig12629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=727bp|location=Sequence derived from alignment at P-wetherbeei_contig12629:1069..1795- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCCGCGCCGCCCGCCATCTGATGCATGTCTGTCCGCGCGACCGCC
TTTTTGGCTGCGACACGCTGCGCCGCCACTTGGATGCAGATTCGCTCAGA
CGTGCTGCGATGTTCAATCTGAGCGTGAACGGGGAAATATCGACGCCCCG
CGCAGGAAGCGTGAGGCGTCCGCATCACAGCGCAAGATTCAAGAAAGGCA
GCCGGCGTCGCCCGTTGCCCGCTTTCTCGCTCACCACTCTTCGACCGCCC
GCGCTCTGACTCGACCTCAGGGACGTACGTGGTGGGAAGTTAAGAAGAGA
GCTTTGGTTTTCTTTGCGCTTCGGTTGCAATGGAAGCAATTGCGGACACC
GGCACGCCCAGAACGGGCAGCGCACGACAGAATGGCTCGCAGCGAGGTAC
TTGGAGGTAACCGCGGCGGCGCGTCCCTCGCTGCGTGAAGAGCATGTGTC
CGCCTGGTCGGGTGGACACCGGGCAGGAGGGAAGTTCGTGCGCATGGGTC
ATCGACCGCAAAAAATTTCATCTTCTTCAACCGCCGGCGGGGTCCAGGAG
GTTGTGGAAAAGTAGGGAAAGGGGGACGACGTTTTCTCGCTTTGTCGAAG
CACCGGCGGAAGGAAGCGATTTCATACGAGCCGAGCGACAGAACTGGCGT
GCACCAGTGGTTGGCAGAGGTGCAACTTAAAGAAGGCTACGCCGTTCATG
GATCCCGCAGAAGCAACTCAGTTCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12629:1069..1795-

>mRNA_P-wetherbeei_contig12629.1.1 ID=mRNA_P-wetherbeei_contig12629.1.1|Name=mRNA_P-wetherbeei_contig12629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig12629:1069..1795- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCCGCGCCGCCCGCCATCTGATGCATGTCTGTCCGCGCGACCGCC
TTTTTGGCTGCGACACGCTGCGCCGCCACTTGGATGCAGATTCGCTCAGA
CGTGCTGCGATGTTCAATCTGAGCGTGAACGGGGAAATATCGACGCCCCG
CGCAGGAAGCGTGAGGCGTCCGCATCACAGCGCAAGATTCAAGAAAGGCA
GCCGGCGTCGCCCGTTGCCCGCTTTCTCGCTCACCACTCTTCGACCGCCC
GCGCTCTGACTCGACCTCAGGGACGTACGTGGTGGGAAGTTAAGAAGAGA
GCTTTGGTTTTCTTTGCGCTTCGGTTGCAATGGAAGCAATTGCGGACACC
GGCACGCCCAGAACGGGCAGCGCACGACAGAATGGCTCGCAGCGAGGTAC
TTGGAGGTAACCGCGGCGGCGCGTCCCTCGCTGCGTGA
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