mRNA_P-wetherbeei_contig1262.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1262.5.1
Unique NamemRNA_P-wetherbeei_contig1262.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1262.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1262contigP-wetherbeei_contig1262:6205..6953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size749
Hectar predicted targeting categorysignal peptide
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.842156-UTR-P-wetherbeei_contig1262:6204..63301683185954.842156-UTR-P-wetherbeei_contig1262:6204..6330Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 6205..6330 +
1683185954.857116-UTR-P-wetherbeei_contig1262:6762..69531683185954.857116-UTR-P-wetherbeei_contig1262:6762..6953Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1262 6763..6953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.8497424-CDS-P-wetherbeei_contig1262:6330..67621683185954.8497424-CDS-P-wetherbeei_contig1262:6330..6762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1262 6331..6762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1262.5.1prot_P-wetherbeei_contig1262.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1262 6331..6762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1262.5.1

>prot_P-wetherbeei_contig1262.5.1 ID=prot_P-wetherbeei_contig1262.5.1|Name=mRNA_P-wetherbeei_contig1262.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MKRRAVVIVFLSLPFVGAFNVPLMDLTKLDLRKESDDARIVAHMEEDYKF
GKTREVRHSFELIDSQLSHLETRAEQISSMHWRSFLATHEGPCRRRWRQW
PRPPDSCSFGPAAMAVTSKVPGGVQMVAVLRRPPRRCGRQWPQ*
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mRNA from alignment at P-wetherbeei_contig1262:6205..6953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1262.5.1 ID=mRNA_P-wetherbeei_contig1262.5.1|Name=mRNA_P-wetherbeei_contig1262.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=749bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:6205..6953+ (Phaeothamnion wetherbeei SAG_119_79)
GCATCAATATTCTTCGACGGGTGCGTACACTGGAATTCGCATCGGTGCAC
ACACACAACGAATGTTCATAATTCTTTCGGACAAACCTTCATCAACTTGG
CGTGGATTCGTCGCGCAGAGAAGAAGATGAAGAGGCGCGCTGTCGTGATT
GTCTTCCTCTCCTTGCCGTTCGTCGGCGCTTTCAACGTGCCTCTCATGGA
TCTCACTAAACTTGACCTCAGAAAAGAGAGCGACGACGCGCGTATAGTCG
CCCACATGGAAGAAGACTACAAGTTTGGGAAAACCCGCGAGGTCCGACAT
AGCTTCGAGCTCATCGATTCACAGCTGTCGCATCTGGAGACGCGAGCCGA
GCAGATCTCTTCTATGCATTGGCGAAGCTTTTTGGCCACACATGAGGGGC
CTTGTCGGCGGCGCTGGCGACAGTGGCCTCGCCCCCCTGACAGCTGCAGC
TTTGGCCCTGCAGCAATGGCGGTGACGTCGAAAGTTCCCGGCGGCGTTCA
GATGGTGGCGGTGCTGCGGCGACCGCCTCGCCGGTGCGGGCGACAGTGGC
CTCAATGACGCTAGCTGTGGCGCGATGCCGATTGCAGTGACCGTGGTGGT
GTTTTCGACGGCGGCCTCGGCGCGTTTGGGTGGCAGTGGTACTGCCCGCC
AGCCAGCCACCGAAGCAGGAGGTCTTCGTGTAGCGAAATTTAGACGCCCC
ATCTTCCTGCATATGCTTTCGTTCTTTCCTTTTTTGCGGTGGCGGAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1262:6205..6953+

>mRNA_P-wetherbeei_contig1262.5.1 ID=mRNA_P-wetherbeei_contig1262.5.1|Name=mRNA_P-wetherbeei_contig1262.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig1262:6205..6953+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAGGCGCGCTGTCGTGATTGTCTTCCTCTCCTTGCCGTTCGTCGG
CGCTTTCAACGTGCCTCTCATGGATCTCACTAAACTTGACCTCAGAAAAG
AGAGCGACGACGCGCGTATAGTCGCCCACATGGAAGAAGACTACAAGTTT
GGGAAAACCCGCGAGGTCCGACATAGCTTCGAGCTCATCGATTCACAGCT
GTCGCATCTGGAGACGCGAGCCGAGCAGATCTCTTCTATGCATTGGCGAA
GCTTTTTGGCCACACATGAGGGGCCTTGTCGGCGGCGCTGGCGACAGTGG
CCTCGCCCCCCTGACAGCTGCAGCTTTGGCCCTGCAGCAATGGCGGTGAC
GTCGAAAGTTCCCGGCGGCGTTCAGATGGTGGCGGTGCTGCGGCGACCGC
CTCGCCGGTGCGGGCGACAGTGGCCTCAATGA
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