mRNA_P-wetherbeei_contig12619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12619.1.1
Unique NamemRNA_P-wetherbeei_contig12619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.670e-29
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    4 FLSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRNAGVGSG 264
            +LS+ADN IG  +AD  ALE FRDAM+SC TLTH+DLLYNRIGERG RV+LPAL  E  +IK FLVD+TLP+PLFE LHR    G G
Sbjct:  245 YLSLADNGIGSGDADVDALEDFRDAMMSCSTLTHVDLLYNRIGERGARVMLPAL--EQNRIKHFLVDATLPTPLFEALHRRDSGGGG 329          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.320e-27
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    4 FLSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHR 243
            +LS+ADN IGG   D  AL  FRDA+++C TL+H+DLLYNRIG  G   LLPALAP+N QI+QFLVD+TLP+PLF+ LHR
Sbjct:  244 YLSLADNAIGGVARDVEALALFRDAILACTTLSHVDLLYNRIGPDGATTLLPALAPDNAQIRQFLVDATLPTPLFDALHR 323          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A7S3Y2E7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E7_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.820e-20
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    4 FLSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHR 243
            +L +ADN IG  E D   L  F  +M+SC TLTH+DLLYNRIGE G   L P L PEN +IKQFLVD+ LP  LF  + R
Sbjct:   20 YLGLADNGIGELEGDDAHLRAFGASMLSCETLTHVDLLYNRIGEMGAAALQPFLLPENTRIKQFLVDANLPEGLFGTVFR 99          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.890e-16
Identity = 47/88 (53.41%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDA-MVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRNAGVGSGG 267
            L ++DN+IG  E D  AL  F  A M+    L ++ LLYNRIGE G   LLPAL P N +I+QFLVD TLP PLFE L R +  G GG
Sbjct:  284 LDLSDNDIG--EQDIEALNAFAVALMMPSVALANISLLYNRIGEAGANALLPALDPSNKRIQQFLVDETLPPPLFEALSRVSAGGKGG 369          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 1.230e-15
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDA-MVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRNAG 252
            L+++DN I   E D   L   RD  M S   LT +DL+YNRIGERGG VL+ AL  E  +IK+FLVD TLP PLFE L + AG
Sbjct:  209 LNLSDNLIDQLEEDLAGLTALRDCLMTSTSGLTSVDLMYNRIGERGGLVLVEALESEGCKIKEFLVDLTLPMPLFEKLFKKAG 291          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.450e-14
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDAMVSCPTL--THLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRNAG 252
            + +ADN I   E D   L   ++ +++ PTL  T +DL+YNRIGE G ++L+ A+ PEN +IK+FLVD TLP P+FE L R  G
Sbjct:  248 ICLADNMIDQMEDDIIGLTALKECLLN-PTLALTSVDLMYNRIGEAGAKILIEAVNPENTKIKEFLVDLTLPMPIFEQLFRKGG 330          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A0P1B280_PLAHL (LRR-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B280_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 6.290e-14
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRNAGVGS 261
            L+++DN   G   +  AL  FRDA++ C +L H+D  +N I   G  +LLPALAPEN Q++ FLVD++LP  LF  L+R+   GS
Sbjct:  255 LNLSDN---GIRNNIEALSAFRDALIRCKSLAHVDFTFNLIEPEGASILLPALAPENTQLQSFLVDASLPKNLFLQLNRSHRTGS 336          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A1V9YEK5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEK5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.020e-9
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRN 246
            L+++DN I     DA AL  FR+A+  C TLT++   YN I   G  +LLP L  + G+IK F VD +LP  +F+ L+R+
Sbjct:  229 LNISDNAI---RKDAEALVAFREAIEQCKTLTNIYFSYNLIDVEGAELLLPLLEHDEGRIKAFEVDPSLPPDVFKKLNRS 305          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: T0S8L1_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S8L1_SAPDV)

HSP 1 Score: 59.7 bits (143), Expect = 3.990e-8
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 LSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRVLLPALAPENGQIKQFLVDSTLPSPLFELLHRN 246
            L+++DN I     D  AL  F+DA+  C TLT++   +N I   G  +LLP +  ++G+IK F VD +LP  +F+ L+R+
Sbjct:  270 LNLSDNAI---RKDPEALTAFKDAIEHCKTLTNIYFSFNLIDVEGAEILLPLMEQDDGRIKAFEVDPSLPPEIFKKLNRS 346          
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-5
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query:    4 FLSVADNEIGGSEADATALETFRDAMV-SCPTLTHLDLLYNRIGERGGRVLLPALAPEN--------GQIKQFLVDSTLPSPLFELLHR-NAGVG 258
            +LS+ADN I  ++ D  ALE     M      L+ +DLL+NRIGE+G   +L A             G+I+   VD +LP  LF  L R +AG G
Sbjct:  246 YLSLADNAIAATDEDLEALEQLAGVMQRETSLLSQVDLLHNRIGEKGANTMLAAFNGGELEGSKGPPGKIQMLQVDHSLPDQLFNTLGRLDAGKG 340          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FZR4_ECTSI1.670e-2967.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YWH7_9STRA4.320e-2765.00Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A7S3Y2E7_HETAK1.820e-2056.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G5E5_9STRA7.890e-1653.41Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A482S5Z2_9ARCH1.230e-1554.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HG08_9STRA4.450e-1447.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0P1B280_PLAHL6.290e-1445.88LRR-containing protein n=1 Tax=Plasmopara halstedi... [more]
A0A1V9YEK5_9STRA4.020e-942.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0S8L1_SAPDV3.990e-838.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8J2X6V8_9STRA1.490e-537.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12619contigP-wetherbeei_contig12619:2..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZR4
PFAMsLRR_6
Model size333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.73e-30
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.8184144-CDS-P-wetherbeei_contig12619:1..3341683185954.8184144-CDS-P-wetherbeei_contig12619:1..334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12619 2..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12619.1.1prot_P-wetherbeei_contig12619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12619 2..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12619.1.1

>prot_P-wetherbeei_contig12619.1.1 ID=prot_P-wetherbeei_contig12619.1.1|Name=mRNA_P-wetherbeei_contig12619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
AFLSVADNEIGGSEADATALETFRDAMVSCPTLTHLDLLYNRIGERGGRV
LLPALAPENGQIKQFLVDSTLPSPLFELLHRNAGVGSGGGGGKKGKKGKK
GKKGGGKKEK*
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mRNA from alignment at P-wetherbeei_contig12619:2..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12619.1.1 ID=mRNA_P-wetherbeei_contig12619.1.1|Name=mRNA_P-wetherbeei_contig12619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig12619:2..334+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCCTGTCGGTCGCCGACAATGAGATTGGTGGCTCCGAGGCGGACGC GACGGCACTCGAAACCTTCCGGGACGCTATGGTTTCGTGTCCGACGCTGA CCCATCTGGATCTGCTCTACAACCGGATCGGGGAGCGCGGCGGGCGAGTG CTGCTGCCTGCGCTCGCGCCCGAAAACGGGCAGATCAAGCAGTTTCTGGT GGACTCAACGCTGCCATCGCCACTTTTTGAGTTGCTGCATCGCAATGCCG GGGTGGGCAGCGGCGGCGGGGGCGGGAAGAAGGGCAAGAAGGGGAAGAAG GGGAAGAAAGGCGGCGGCAAGAAGGAAAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12619:2..334+

>mRNA_P-wetherbeei_contig12619.1.1 ID=mRNA_P-wetherbeei_contig12619.1.1|Name=mRNA_P-wetherbeei_contig12619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig12619:2..334+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCCTGTCGGTCGCCGACAATGAGATTGGTGGCTCCGAGGCGGACGC
GACGGCACTCGAAACCTTCCGGGACGCTATGGTTTCGTGTCCGACGCTGA
CCCATCTGGATCTGCTCTACAACCGGATCGGGGAGCGCGGCGGGCGAGTG
CTGCTGCCTGCGCTCGCGCCCGAAAACGGGCAGATCAAGCAGTTTCTGGT
GGACTCAACGCTGCCATCGCCACTTTTTGAGTTGCTGCATCGCAATGCCG
GGGTGGGCAGCGGCGGCGGGGGCGGGAAGAAGGGCAAGAAGGGGAAGAAG
GGGAAGAAAGGCGGCGGCAAGAAGGAAAAGTAG
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