mRNA_P-wetherbeei_contig12596.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12596.2.1
Unique NamemRNA_P-wetherbeei_contig12596.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A521LWF6_9HYPH (Acyl-CoA dehydrogenase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LWF6_9HYPH)

HSP 1 Score: 100 bits (249), Expect = 1.180e-23
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 MDRLERANHLV-DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            MDRLERA+ L+ DPVA ARALGPA+A ASDEIERTRR+PPALLSVLH+A+LFRLLLPRS GGEE
Sbjct:    1 MDRLERADPLLNDPVARARALGPAVAVASDEIERTRRLPPALLSVLHEARLFRLLLPRSAGGEE 64
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A537Y430_9PROT (Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537Y430_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 4.630e-15
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   34 DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            DPVA AR LG  IAA++DEIERTRRIP ALL  LHD++LFR+LLPRS GG+E
Sbjct:    8 DPVARARELGAEIAASADEIERTRRIPEALLGRLHDSRLFRMLLPRSAGGDE 59
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A525JZ12_BRASZ (Acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JZ12_BRASZ)

HSP 1 Score: 75.9 bits (185), Expect = 1.190e-14
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   34 DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            DPVA AR LG  IAA++DEIERTRRIP ALL+ LHD++LFR+LLPRS GG+E
Sbjct:    8 DPVARARELGAEIAASADEIERTRRIPEALLARLHDSRLFRMLLPRSAGGDE 59
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A537QBI3_9PROT (Acyl-CoA dehydrogenase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QBI3_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 4.260e-14
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   34 DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            DPVA AR L   IAAA+DEIERTRRIP ALL  LHD++LFR+LLPRS GG+E
Sbjct:    8 DPVARARELAAEIAAAADEIERTRRIPEALLERLHDSRLFRMLLPRSAGGDE 59
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A354UYH5_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354UYH5_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 2.900e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   31 VDPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            +DPVA AR LGP IA+A+DEIERT+ IP  LLS LHD++L R+LLPRS GG+E
Sbjct:   11 IDPVARARDLGPEIASAADEIERTQAIPEPLLSRLHDSRLARILLPRSAGGDE 63
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A5C8PSH5_9HYPH (Acyl-CoA dehydrogenase n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PSH5_9HYPH)

HSP 1 Score: 72.0 bits (175), Expect = 2.910e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   37 PVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            PV  ARAL PA+ AASD+IERT+RIP  LLS LH A+LFR+LLPRSVGG+E
Sbjct:   14 PVTRARALAPALDAASDDIERTQRIPEPLLSDLHAARLFRMLLPRSVGGDE 64
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A5C5SEQ4_9HYPH (Acyl-CoA dehydrogenase n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5SEQ4_9HYPH)

HSP 1 Score: 71.6 bits (174), Expect = 3.980e-13
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   37 PVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            P+A A AL PA+AAA+D IERT+RIP  LLS LH+++LFR+LLPRSVGG+E
Sbjct:   13 PLARAAALAPALAAAADAIERTQRIPEPLLSALHESRLFRMLLPRSVGGDE 63
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: UPI00131C4DA6 (acyl-CoA dehydrogenase family protein n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131C4DA6)

HSP 1 Score: 71.6 bits (174), Expect = 3.980e-13
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   31 VDPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            +DPVA AR LGPAIAAA+DEIER++ IP  LL+ LH+++L R+LLPRSVGG++
Sbjct:   11 IDPVARARDLGPAIAAAADEIERSQSIPEPLLTQLHESRLARMLLPRSVGGDQ 63
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A537QK26_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QK26_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 2.760e-12
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   34 DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            DPV  AR L PAIAAA++EIER RRIP  LL  LH A+LFR+L PRSVGG+E
Sbjct:   42 DPVLRARDLAPAIAAAAEEIERLRRIPEPLLEQLHAARLFRMLYPRSVGGDE 93
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BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Match: A0A537S6U3_9PROT (Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537S6U3_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 3.670e-12
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   34 DPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKLFRLLLPRSVGGEE 189
            DP+A AR LG AIAAA+D +E TRRIP  LL+ LH+++LFR+LLPRSVGG++
Sbjct:   17 DPLAMARDLGAAIAAAADAVESTRRIPEPLLARLHESRLFRMLLPRSVGGDQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12596.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521LWF6_9HYPH1.180e-2382.81Acyl-CoA dehydrogenase n=1 Tax=Reyranella sp. TaxI... [more]
A0A537Y430_9PROT4.630e-1573.08Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Alphapro... [more]
A0A525JZ12_BRASZ1.190e-1473.08Acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. ... [more]
A0A537QBI3_9PROT4.260e-1473.08Acyl-CoA dehydrogenase n=2 Tax=Alphaproteobacteria... [more]
A0A354UYH5_9PROT2.900e-1367.92Acyl-CoA dehydrogenase n=1 Tax=Acetobacteraceae ba... [more]
A0A5C8PSH5_9HYPH2.910e-1372.55Acyl-CoA dehydrogenase n=1 Tax=Vineibacter terrae ... [more]
A0A5C5SEQ4_9HYPH3.980e-1368.63Acyl-CoA dehydrogenase n=1 Tax=Reyranella sp. CPCC... [more]
UPI00131C4DA63.980e-1366.04acyl-CoA dehydrogenase family protein n=1 Tax=Acid... [more]
A0A537QK26_9PROT2.760e-1269.23Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria... [more]
A0A537S6U3_9PROT3.670e-1265.38Acyl-CoA dehydrogenase n=1 Tax=Alphaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12596contigP-wetherbeei_contig12596:1778..1966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1040989.AWZU01000031_gene3917
PFAMsAcyl-CoA_dh_2,Acyl-CoA_dh_N
Model size189
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K22027
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.49e-12
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MXMQ@1224|Proteobacteria,2U0CV@28211|Alphaproteobacteria,3JUP6@41294|Bradyrhizobiaceae
EC1.14.13.235
DescriptionAcyl-CoA dehydrogenase, C-terminal domain
Cds size189
COG categoryI
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185954.1233761-CDS-P-wetherbeei_contig12596:1777..19661683185954.1233761-CDS-P-wetherbeei_contig12596:1777..1966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12596 1778..1966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12596.2.1prot_P-wetherbeei_contig12596.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12596 1778..1966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12596.2.1

>prot_P-wetherbeei_contig12596.2.1 ID=prot_P-wetherbeei_contig12596.2.1|Name=mRNA_P-wetherbeei_contig12596.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MDRLERANHLVDPVAGARALGPAIAAASDEIERTRRIPPALLSVLHDAKL
FRLLLPRSVGGEE
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mRNA from alignment at P-wetherbeei_contig12596:1778..1966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12596.2.1 ID=mRNA_P-wetherbeei_contig12596.2.1|Name=mRNA_P-wetherbeei_contig12596.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig12596:1778..1966+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGCCTCGAGCGCGCCAATCATCTAGTCGATCCTGTCGCCGGCGC
CCGTGCGCTGGGCCCCGCGATTGCCGCCGCGTCCGACGAGATCGAGCGCA
CGCGCCGCATTCCTCCTGCGCTACTGTCGGTGCTGCACGACGCAAAACTC
TTCCGCCTGCTGCTGCCGCGCTCAGTGGGCGGCGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12596:1778..1966+

>mRNA_P-wetherbeei_contig12596.2.1 ID=mRNA_P-wetherbeei_contig12596.2.1|Name=mRNA_P-wetherbeei_contig12596.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig12596:1778..1966+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGCCTCGAGCGCGCCAATCATCTAGTCGATCCTGTCGCCGGCGC
CCGTGCGCTGGGCCCCGCGATTGCCGCCGCGTCCGACGAGATCGAGCGCA
CGCGCCGCATTCCTCCTGCGCTACTGTCGGTGCTGCACGACGCAAAACTC
TTCCGCCTGCTGCTGCCGCGCTCAGTGGGCGGCGAGGAG
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