mRNA_P-wetherbeei_contig12589.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12589.1.1
Unique NamemRNA_P-wetherbeei_contig12589.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12589.1.1 vs. uniprot
Match: D8LAY5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.620e-17
Identity = 126/318 (39.62%), Postives = 159/318 (50.00%), Query Frame = 1 
Query:   28 AYARLLTRWRHEVLRLLVQRDADRTAAGVAAAAAARS--------SAAETEARRVAEARAAVAESEADVLRAELATTSERLRRTKEAMATADADAA--DAAARGARHQDVLAATAAAVEAFRGAAAAGFHERDAALQWALARLREFEQRVALAAERVAAAAAMQRRREVQLRNAHAALAADRRVWRLEREEREFETLVAGRAAAARTXXXXXXXXXXXXXXXXXXXXXXGGYGWP--------------------------------------PSVLPGLRPECEAVMRAVFCRLDAAGAGVVDAGRLVVVLRADRGV 837
            A ARLL  WR EVL+LL+QR  D   A   +  A R         + AETEA+ + + RA  AE+EA++   +L    E LR  +      +A +A    A R              V+ F G A+ G  ER+A L   +A+L  F +R++ A  RV     + R +E++LRN+ AALAADRRVW LER +RE   L          XXXXXXXXXXXXXXXXXXXXXX                                            P +L GLRPECEAVMRA+FCR+D  G G V A RL+ VLR+D GV
Sbjct:  768 AVARLLAAWRAEVLKLLLQRGVDAEVAAEESREARREVVEAREARARAETEAKSLTQ-RALAAEAEAELSGIKLTRAFEELREERTGRCAGEASSAGYSVAVRDLHEW---------VQGFLGRASEGVFEREALLARGVAKLEAFSERLSQAHGRVQVLETLLRHKEIRLRNSRAALAADRRVWLLERRDRELAALSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQPPLLEGLRPECEAVMRALFCRVDRLGTGAVRARRLLDVLRSDCGV 1075
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BLAST of mRNA_P-wetherbeei_contig12589.1.1 vs. uniprot
Match: A0A835YNX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-11
Identity = 77/201 (38.31%), Postives = 99/201 (49.25%), Query Frame = 1 
Query:    7 GNAGGGEAYARLLTRWRHEVLRLLVQRDADRTAAGVAAAAAARSSAAETEARRVAEARAAVAESEADVLRAELATTSERLRRTKEAMATADADAADAAARGARHQDVLAATAAAVEAFRGAAAAG---FHERDAALQWALARLREFEQRVALAAERVAAAAAMQRRREVQLRNAHAALAADRRVWRLEREEREFETLVAGR 600
            G+ G  + Y +LLT WR EV++LLVQR A                A E  A+  AEA+ A+                     T++  A   AD +D   +  RH    AA  A VE     A      +H++ AA+  ALARL+ F QR+A AA RV  A A Q+R EVQLRN+ AAL ADRRVW+ ER+ RE   L   R
Sbjct:  421 GSGGREDGYVKLLTCWRREVVKLLVQRGA----------------AEEGAAKEAAEAKRAL---------------------TQQRQARGAADCSDLEQQMHRHTHSTAALRAMVEDMAVTALPSDDSYHDKQAAVAQALARLQGFAQRLAAAAGRVRLAQAAQQRSEVQLRNSRAALEADRRVWQQERQRRELAALAKTR 584
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BLAST of mRNA_P-wetherbeei_contig12589.1.1 vs. uniprot
Match: A0A8J2SN10_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN10_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.760e-11
Identity = 56/146 (38.36%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:  391 RDAALQWALARLREFEQRVALAAERVAAAAAMQRRREVQLRNAHAALAADRRVWRLEREEREFETLVAGRAAAARTXXXXXXXXXXXXXXXXXXXXXXGGYGWPPSVLPGLRPECEAVMRAVFCRLDAAGAGVVDAGRLVVVLRAD 828
            R+  L    +RL E   R+  A++RVA AA + R+REV++RNA AALAA++R+WR ER + E + L  G  A                               PP  L GLRPE EA+MR +F  LDA   G V A  L   LR D
Sbjct:  145 RETTLVRTASRLDEHAARLRKASDRVACAAELVRQREVRVRNARAALAAEKRLWRRERRDAETKALAEGGVAVTAP---------------------------PPDALVGLRPEAEALMRGIFRDLDADATGSVPAAALRKALRGD 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12589.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAY5_ECTSI4.620e-1739.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YNX3_9STRA1.740e-1138.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SN10_9STRA4.760e-1138.36Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12589contigP-wetherbeei_contig12589:7..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAY5
PFAMsLRR_4,LRR_8,LRR_9
Model size837
Max annot lvl2759|Eukaryota
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.57e-18
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size837
COG categoryL
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.7556338-CDS-P-wetherbeei_contig12589:6..8431683185953.7556338-CDS-P-wetherbeei_contig12589:6..843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12589 7..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12589.1.1prot_P-wetherbeei_contig12589.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12589 7..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12589.1.1

>prot_P-wetherbeei_contig12589.1.1 ID=prot_P-wetherbeei_contig12589.1.1|Name=mRNA_P-wetherbeei_contig12589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
GSGNAGGGEAYARLLTRWRHEVLRLLVQRDADRTAAGVAAAAAARSSAAE
TEARRVAEARAAVAESEADVLRAELATTSERLRRTKEAMATADADAADAA
ARGARHQDVLAATAAAVEAFRGAAAAGFHERDAALQWALARLREFEQRVA
LAAERVAAAAAMQRRREVQLRNAHAALAADRRVWRLEREEREFETLVAGR
AAAARTTGCIVCGGGQPPAGETAAAAAAGGYGWPPSVLPGLRPECEAVMR
AVFCRLDAAGAGVVDAGRLVVVLRADRGV
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mRNA from alignment at P-wetherbeei_contig12589:7..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12589.1.1 ID=mRNA_P-wetherbeei_contig12589.1.1|Name=mRNA_P-wetherbeei_contig12589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig12589:7..843- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCAATGCTGGCGGCGGCGAGGCGTACGCCCGGCTGCTGACGCG
ATGGCGGCACGAAGTCCTCCGGCTGCTCGTACAGCGGGACGCCGACCGGA
CCGCGGCGGGCGTGGCGGCGGCGGCCGCCGCCCGCTCGTCTGCCGCGGAG
ACTGAGGCCCGCCGCGTCGCCGAAGCCCGCGCCGCCGTAGCCGAGAGCGA
AGCGGATGTGCTGAGGGCGGAGCTCGCGACGACGAGCGAGCGGCTGCGGC
GGACGAAGGAGGCAATGGCGACAGCGGACGCTGACGCTGCTGACGCGGCC
GCGCGCGGAGCGCGGCACCAGGACGTCCTGGCGGCGACGGCGGCCGCCGT
CGAGGCGTTCCGCGGTGCGGCGGCGGCCGGCTTCCACGAGCGGGACGCGG
CGCTGCAGTGGGCGCTGGCGCGGCTACGGGAGTTTGAGCAGCGGGTGGCG
CTGGCGGCGGAGCGAGTGGCGGCGGCGGCCGCCATGCAGCGGCGGCGGGA
GGTGCAGCTGCGCAACGCTCACGCCGCGCTGGCGGCCGACCGGCGGGTCT
GGCGGCTCGAGCGGGAAGAGCGGGAGTTCGAGACGCTGGTGGCCGGCCGG
GCTGCGGCAGCAAGGACGACTGGCTGCATCGTGTGCGGGGGTGGCCAGCC
GCCAGCCGGCGAGACGGCTGCCGCTGCCGCGGCCGGCGGCTACGGCTGGC
CGCCGTCGGTGCTGCCGGGGTTGCGACCTGAGTGCGAGGCGGTCATGCGG
GCGGTATTCTGCCGCCTCGACGCCGCCGGCGCCGGCGTCGTCGACGCCGG
GCGGCTGGTGGTGGTTCTGCGGGCGGACCGTGGCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12589:7..843-

>mRNA_P-wetherbeei_contig12589.1.1 ID=mRNA_P-wetherbeei_contig12589.1.1|Name=mRNA_P-wetherbeei_contig12589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig12589:7..843- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCAATGCTGGCGGCGGCGAGGCGTACGCCCGGCTGCTGACGCG
ATGGCGGCACGAAGTCCTCCGGCTGCTCGTACAGCGGGACGCCGACCGGA
CCGCGGCGGGCGTGGCGGCGGCGGCCGCCGCCCGCTCGTCTGCCGCGGAG
ACTGAGGCCCGCCGCGTCGCCGAAGCCCGCGCCGCCGTAGCCGAGAGCGA
AGCGGATGTGCTGAGGGCGGAGCTCGCGACGACGAGCGAGCGGCTGCGGC
GGACGAAGGAGGCAATGGCGACAGCGGACGCTGACGCTGCTGACGCGGCC
GCGCGCGGAGCGCGGCACCAGGACGTCCTGGCGGCGACGGCGGCCGCCGT
CGAGGCGTTCCGCGGTGCGGCGGCGGCCGGCTTCCACGAGCGGGACGCGG
CGCTGCAGTGGGCGCTGGCGCGGCTACGGGAGTTTGAGCAGCGGGTGGCG
CTGGCGGCGGAGCGAGTGGCGGCGGCGGCCGCCATGCAGCGGCGGCGGGA
GGTGCAGCTGCGCAACGCTCACGCCGCGCTGGCGGCCGACCGGCGGGTCT
GGCGGCTCGAGCGGGAAGAGCGGGAGTTCGAGACGCTGGTGGCCGGCCGG
GCTGCGGCAGCAAGGACGACTGGCTGCATCGTGTGCGGGGGTGGCCAGCC
GCCAGCCGGCGAGACGGCTGCCGCTGCCGCGGCCGGCGGCTACGGCTGGC
CGCCGTCGGTGCTGCCGGGGTTGCGACCTGAGTGCGAGGCGGTCATGCGG
GCGGTATTCTGCCGCCTCGACGCCGCCGGCGCCGGCGTCGTCGACGCCGG
GCGGCTGGTGGTGGTTCTGCGGGCGGACCGTGGCGTC
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