mRNA_P-wetherbeei_contig12578.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12578.2.1
Unique NamemRNA_P-wetherbeei_contig12578.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: D7FIA4_ECTSI (Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA4_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.230e-26
Identity = 71/172 (41.28%), Postives = 93/172 (54.07%), Query Frame = 1
Query:   46 SLSLQVGGMTLPHPEKGPTGGEDAYFFMENL-----IGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQRRAESPALAHA--------------------------AATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQP 468
            +L+L V    +  P+K   GG+DAYF          +GVFDGVGGW  LG+DP  F+R FA    AN+TAQR  E+ +L  +                          AA A   G+CTAC+ +FDP  G + G+N+GDSGALL+RR+  G     FVA RT +Q+H FNQP
Sbjct:   47 TLTLDVDSSMIARPDKAARGGDDAYFVNVGDSGALDLGVFDGVGGWASLGHDPGVFSRGFAKATAANITAQRAEEAVSLRRSQLEGEPLPRIAQGVDLQQALEYATTNAALAGTQGTCTACVVTFDPVYGMLNGVNVGDSGALLVRRDARGTP---FVALRTATQRHNFNQP 215          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: A0A835Z8H6_9STRA (Protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.660e-26
Identity = 71/149 (47.65%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  103 GGEDAYFFMENLIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQRRAESPAL--------AHAAATAAGI-------------------GSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQP 468
            GGEDA+F +   IGVFDGVGG+R+LG DP+AF+R+FAA    N+TAQR A   A+        A   AT  G+                   G CTAC+ASFD  SG + G NLGDSG  +LRR+ +   +  FVAYRT  QQHRFN P
Sbjct:   25 GGEDAFFLLPKDIGVFDGVGGFRKLGVDPAAFSRAFAAAAAHNITAQR-ARWEAIGGGGGGSGAQTVATFKGVDLRLALEHALSSALRGTRGGGCTACVASFDAASGLLTGANLGDSGLAVLRRDLS---KRMFVAYRTTPQQHRFNMP 169          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: A0A6S9M3S8_HETAK (Protein phosphatase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M3S8_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.510e-24
Identity = 64/150 (42.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   40 GPSLSLQVGGMTLPHPEKGPTGGEDAYFFMENLIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQRRAESP-------ALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQP 468
            G  L  +     +PHP K  TGGEDA F   + +GVFDGVGGW  LG D   ++R  A     N+  QR            AL +A       GS TA +A++DP  G + G NLGDSGAL LRR+  G+   YFV  RT +Q+H FN P
Sbjct:   89 GQRLVFEGASYMIPHPAKAQTGGEDACFVSSHSVGVFDGVGGWATLGVDTGLYSRELARLTALNIEEQRNTTGSDAVDLVSALEYALKNNPNTGSTTAVVAAWDPRGGLLRGANLGDSGALCLRRDAAGE---YFVLLRTAAQEHGFNFP 235          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: A0A7S0ZJ95_9RHOD (Protein phosphatase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ95_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 5.410e-19
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   49 LSLQVGGMTLPHPEKGPTGGEDAYFFMENL--IGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQRRAE--SPALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQPVRTFVD 486
            L    G   +PHP+K   GGEDAYF    L  +GVFDGVGGW  LG DP  +++  +A + A+   Q  A+    AL+ A      IGS TAC+ S   E G ++GLNLGDSG +++R        N    YR+  QQH FN P +   D
Sbjct:   37 LRFSCGAFAIPHPDKQAKGGEDAYFVNSKLDVVGVFDGVGGWASLGIDPKLYSQKLSA-LTAHKINQYGAKFIMKALSEAVDENEHIGSSTACVVSLS-EEGTLSGLNLGDSGVMVVR--------NSEAIYRSVDQQHYFNCPYQVGSD 176          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: M4BT57_HYAAE (Protein phosphatase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BT57_HYAAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.160e-16
Identity = 57/146 (39.04%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   46 SLSLQVGGMTLPHPEKGPTGGEDAYFFMENLIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQRRAESP--ALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRN---YFVAYRTQSQQHRFNQP 468
            +L L  G   LPHP+K  TGGEDA+F   N++GV DGVGGW R G D   ++R+        VT      +P   L  A  +A   GS TAC+   D E   +  +NLGDSG LL R       R    + + + T  Q H FN P
Sbjct:   17 ALRLDSGVCGLPHPQKRATGGEDAWFIGNNIVGVADGVGGWARKGIDSGEYSRTLMESAKQMVTMADTMPTPLQVLTEAHHSAQCPGSSTACIVQLDGEV--LQAINLGDSGFLLCRLRPDDDARGELKWQIVHETLHQCHYFNCP 160          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: R1CJA3_EMIHU (Protein phosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CJA3_EMIHU)

HSP 1 Score: 78.2 bits (191), Expect = 6.660e-14
Identity = 60/154 (38.96%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   49 LSLQVGGMTLPHPEKGPTGGEDAYFFMEN--LIGVFDGVGGWRRLGYDPSAFTRSFAAR---VVANVTAQRRAESPALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLR---RERTGQGRNYF---VAYRTQSQQHRFNQPVRT 477
            L + +GG  LPHP K   GGEDA+ F +   L GV DGVGG  + G DP AF+R    R     A   A    ++  LA     + G GS T  L   +  +  +  LNLGDSGA++LR   RE +G         V  RTQ Q H +N P +T
Sbjct:   16 LHVVLGGSVLPHPAKADKGGEDAFLFDDKRCLFGVADGVGGSAKNGVDPGAFSREMLERCHQAAACGVADALPDALRLASECPLSGGGGSSTLVLGQLEEGTSTLRLLNLGDSGAMVLRPAMREVSGTDAKQLWPRVVLRTQEQTHGWNWPYQT 169          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: UPI001EE59E1B (protein phosphatase PTC7 homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE59E1B)

HSP 1 Score: 74.3 bits (181), Expect = 8.640e-13
Identity = 58/142 (40.85%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  106 GEDAYFFMEN----LIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTA-----QRRAESPALAHAAA-------TAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQPVRTFV 483
            G+DAYF  +N    +IGV DGVGGWR  G DPSAF R   A     V       Q R ++PA   AA+           IGS TACL +   E   +   NLGDSG L++R    G+     V +R+Q QQH FN P +  V
Sbjct:   59 GDDAYFISKNKAVDVIGVADGVGGWRSYGIDPSAFPRILMATCERMVQEGCFRPQARPQAPATVIAASYQELMEQKVPLIGSSTACLVALHREERTIYSANLGDSGFLVIRE---GE-----VVHRSQEQQHYFNTPFQLAV 192          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: K1P2F2_CRAGI (Protein phosphatase n=2 Tax=Crassostrea TaxID=6564 RepID=K1P2F2_CRAGI)

HSP 1 Score: 74.3 bits (181), Expect = 8.720e-13
Identity = 57/140 (40.71%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  100 TGGEDAYFFMEN----LIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTAQR-RAESPALAHAAA-------TAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHRFNQPVRTFV 483
            T G+DAYF   N    +IGV DGVGGWR  G DPSAF RS        V   R  A++PA   AA+           IGS TAC+ +   +   +   NLGDSG L++R E+        V +R+Q QQH FN P +  V
Sbjct:   57 TFGDDAYFVANNRTADVIGVADGVGGWRNYGIDPSAFPRSLMETCERMVREGRFNAQAPATVIAASYYELQQMKTPLIGSSTACIVALHKKERRLYTANLGDSGFLVIRDEQ--------VVHRSQEQQHYFNTPFQLAV 188          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: A0A024GKY3_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKY3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.440e-12
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   55 LQVGGMTLPHPEKGPTGGEDAYFFMENLIGVFDGVGGWRRLGYDPSAFTRSFAARVVANVTA-QRRAE---SPALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLRRE-RTGQ-----GRNYFVAYRTQSQQHRFNQP 468
            L  G   LPHP+K  TGGEDA+F    ++GV DGVGGW R G D   + RS    +   + +  + AE   SP    + A    +GS TAC+   D     +   NLGDSG ++ R++ + GQ        + + Y ++ Q H FN P
Sbjct: 1762 LVSGSCALPHPQKRATGGEDAHFLSNTVVGVADGVGGWARKGIDAGEYARSLMKLIHQTIDSIPKEAEKIPSPLQLLSFAHKRSMGSSTACIVQLDGNL--LRAANLGDSGFIVCRQKSQKGQLTATLAPKWELVYESKHQSHSFNCP 1907          
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Match: A0A833V6L0_9POAL (Protein phosphatase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V6L0_9POAL)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-11
Identity = 50/119 (42.02%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   46 SLSLQVGGMTLPHPEKGPTGGEDAYFFMENLIGVFDGVGGWRRLGYDPSAFTRSF---AARVV-ANVTAQRRAESPALAHAAATAAGIGSCTACLASFDPESGDVAGLNLGDSGALLLR 390
            SL L  GG  LPHP K  TGGEDAYF ++N  GV DGVG W   G +   + R       R++ A+  AQ    S  L  AAA A   GS T  +A FD +   +   N+GDSG +++R
Sbjct:  238 SLYLASGGAILPHPSKVRTGGEDAYFAIDNWFGVADGVGQWSFEGINAGLYARELMDSCHRIISASKDAQDLTPSQLLVKAAAEARSPGSSTILVAHFDGQV--LRAANIGDSGFVVIR 354          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12578.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIA4_ECTSI1.230e-2641.28Protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z8H6_9STRA4.660e-2647.65Protein phosphatase n=1 Tax=Tribonema minus TaxID=... [more]
A0A6S9M3S8_HETAK1.510e-2442.67Protein phosphatase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S0ZJ95_9RHOD5.410e-1941.33Protein phosphatase n=1 Tax=Timspurckia oligopyren... [more]
M4BT57_HYAAE9.160e-1639.04Protein phosphatase n=1 Tax=Hyaloperonospora arabi... [more]
R1CJA3_EMIHU6.660e-1438.96Protein phosphatase n=2 Tax=Emiliania huxleyi TaxI... [more]
UPI001EE59E1B8.640e-1340.85protein phosphatase PTC7 homolog n=2 Tax=Haliotis ... [more]
K1P2F2_CRAGI8.720e-1340.71Protein phosphatase n=2 Tax=Crassostrea TaxID=6564... [more]
A0A024GKY3_9STRA1.440e-1235.81PPM-type phosphatase domain-containing protein n=1... [more]
A0A833V6L0_9POAL1.040e-1142.02Protein phosphatase n=1 Tax=Carex littledalei TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12578contigP-wetherbeei_contig12578:1350..1958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIA4
PFAMsPP2C_2,SpoIIE
Model size486
Max annot lvl2759|Eukaryota
KEGG koko:K12815,ko:K14773,ko:K17508
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0016043,GO:0016311,GO:0019538,GO:0035970,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0061024,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0104004,GO:1901564
Exons2
Evalue1.89e-27
EggNOG OGsCOG0631@1|root,KOG1379@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-11_001160.1
EC3.1.3.16,3.6.4.13
Descriptionphosphoprotein phosphatase activity
Cds size480
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03009,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.288056-UTR-P-wetherbeei_contig12578:1349..13551683185953.288056-UTR-P-wetherbeei_contig12578:1349..1355Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12578 1350..1355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185953.2980826-CDS-P-wetherbeei_contig12578:1355..16101683185953.2980826-CDS-P-wetherbeei_contig12578:1355..1610Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12578 1356..1610 +
1683185953.3059962-CDS-P-wetherbeei_contig12578:1733..19581683185953.3059962-CDS-P-wetherbeei_contig12578:1733..1958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12578 1734..1958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12578.2.1prot_P-wetherbeei_contig12578.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12578 1356..1958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12578.2.1

>prot_P-wetherbeei_contig12578.2.1 ID=prot_P-wetherbeei_contig12578.2.1|Name=mRNA_P-wetherbeei_contig12578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MSTLLPSTPPQGPSLSLQVGGMTLPHPEKGPTGGEDAYFFMENLIGVFDG
VGGWRRLGYDPSAFTRSFAARVVANVTAQRRAESPALAHAAATAAGIGSC
TACLASFDPESGDVAGLNLGDSGALLLRRERTGQGRNYFVAYRTQSQQHR
FNQPVRTFVD
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mRNA from alignment at P-wetherbeei_contig12578:1350..1958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12578.2.1 ID=mRNA_P-wetherbeei_contig12578.2.1|Name=mRNA_P-wetherbeei_contig12578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig12578:1350..1958+ (Phaeothamnion wetherbeei SAG_119_79)
ACATCAATGTCGACGCTGCTGCCCTCTACGCCGCCCCAGGGACCCTCCCT GTCGCTGCAGGTGGGCGGCATGACCCTCCCTCACCCGGAGAAAGGGCCGA CTGGCGGCGAGGACGCCTACTTCTTTATGGAGAACTTGATAGGTGTCTTT GACGGCGTCGGCGGATGGCGCCGCCTCGGATACGATCCGAGCGCTTTCAC CCGGAGCTTCGCTGCGCGGGTTGTCGCAAACGTAACGGCACAGCGCCGCG CGGAATCTCCCGTCGCTGCCGCCGCAGCAGATGATGACAGGGGATACGGC AACACGGACGGCGGCGCACCGACGCCGCTGCCACCGCCGCCCTCATACCC GCCACCGCCGCCGGGACGCGTGGATCTCCGCAAGGCGCTGGCGCACGCCG CCGCCACCGCTGCCGGCATCGGCAGCTGCACGGCGTGCCTTGCGAGCTTT GACCCAGAATCGGGAGACGTCGCCGGCCTGAATCTGGGCGATTCGGGGGC GCTGCTGCTGCGGCGGGAGAGGACGGGGCAGGGCAGGAATTACTTCGTGG CGTACAGGACGCAGTCGCAGCAACATCGCTTCAACCAGCCAGTGAGAACC TTTGTTGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12578:1350..1958+

>mRNA_P-wetherbeei_contig12578.2.1 ID=mRNA_P-wetherbeei_contig12578.2.1|Name=mRNA_P-wetherbeei_contig12578.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig12578:1350..1958+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACGCTGCTGCCCTCTACGCCGCCCCAGGGACCCTCCCTGTCGCT
GCAGGTGGGCGGCATGACCCTCCCTCACCCGGAGAAAGGGCCGACTGGCG
GCGAGGACGCCTACTTCTTTATGGAGAACTTGATAGGTGTCTTTGACGGC
GTCGGCGGATGGCGCCGCCTCGGATACGATCCGAGCGCTTTCACCCGGAG
CTTCGCTGCGCGGGTTGTCGCAAACGTAACGGCACAGCGCCGCGCGGAAT
CTCCCGCGCTGGCGCACGCCGCCGCCACCGCTGCCGGCATCGGCAGCTGC
ACGGCGTGCCTTGCGAGCTTTGACCCAGAATCGGGAGACGTCGCCGGCCT
GAATCTGGGCGATTCGGGGGCGCTGCTGCTGCGGCGGGAGAGGACGGGGC
AGGGCAGGAATTACTTCGTGGCGTACAGGACGCAGTCGCAGCAACATCGC
TTCAACCAGCCAGTGAGAACCTTTGTTGAT
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