mRNA_P-wetherbeei_contig12550.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12550.1.1
Unique NamemRNA_P-wetherbeei_contig12550.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A127EW25_9HYPH (DNA topoisomerase 1 n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EW25_9HYPH)

HSP 1 Score: 647 bits (1670), Expect = 1.040e-223
Identity = 324/421 (76.96%), Postives = 358/421 (85.04%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPAR------KEAAPKA 1245
            G AL KREI A+ HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DRGYVRLDKKRLIPEDKGRVLTAFLE+FF +YVEYDFTANLEEQLDL++NNE+ ++D+LRDFW  F  A+  IK+LR+  VIDALD +LAPHLFPP+ DGTDPR+CPNC TGKIGLKLGRFGGF+GC+NYPEC+YTRQL+ G DGAG GMRKLGEDPET LEVTVRSGRFG+YLQLGE  KD +       KPKRASLPK VS  EI+L+RAL LL+LPR +G HPDD E II GVGRFGPYVKH KTYAN+ A +D+L IGLNRAVTLIEEKK  P KGRR GADPGK +GEHPQKGG IVAKNGRYGPYVSH+GVNA LP DKTPETIT+DEA AL+DAR  K GGSS+RRKRPAR      K AAPKA
Sbjct:  450 GEALQKREILASQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRLDKKRLIPEDKGRVLTAFLENFFQKYVEYDFTANLEEQLDLISNNELPYKDVLRDFWRDFMVAISSIKDLRVAQVIDALDEVLAPHLFPPKPDGTDPRQCPNCGTGKIGLKLGRFGGFIGCSNYPECKYTRQLTAGPDGAGGGMRKLGEDPETKLEVTVRSGRFGSYLQLGEATKDEDGT---AVKPKRASLPKGVSPDEIDLERALKLLALPRVVGKHPDDGEDIIAGVGRFGPYVKHGKTYANIGADEDILNIGLNRAVTLIEEKKANPGKGRR-GADPGKQLGEHPQKGGMIVAKNGRYGPYVSHDGVNANLPNDKTPETITLDEAAALIDARPPKSGGSSARRKRPARGAATATKAAAPKA 866          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A6N7GY09_9HYPH (DNA topoisomerase 1 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GY09_9HYPH)

HSP 1 Score: 622 bits (1604), Expect = 1.330e-213
Identity = 301/418 (72.01%), Postives = 351/418 (83.97%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPAR--KEAAPKAA 1248
            G  L KR I ++ HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DRGYVR+DKKRL+PEDKGRVLTAFLESFF+RYVEYDFTA LEEQLD ++NNEMAWR+LLRDFW  F+ AVG+IKELR+  VIDALD ML PHLFPPRADG DPRKCPNC+TG++ LKLG+FGGF+GCTNYPECRYTRQLS G      GM+KLG+DP +GLEVT+RSGRFG Y+QLGE V         G KPKRA +PK ++  +I+L RAL LLSLPRE+G HP+D EPI+ GVGRFGPYV+H KTYA+LE GDDVLT+GLNRAVTLI EKKLKP K RRFGADPG+ +G+HP KGG +V KNGRYGPYVSH+GVNATLP+D  P+T+T+++A+ LLDARA +G G+  R+K+PA+  K  A KAA
Sbjct:  455 GERLDKRAIDSSQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRIDKKRLVPEDKGRVLTAFLESFFARYVEYDFTAGLEEQLDRISNNEMAWRELLRDFWRDFTAAVGDIKELRVAQVIDALDEMLGPHLFPPRADGVDPRKCPNCDTGRLSLKLGKFGGFIGCTNYPECRYTRQLSNGNGAPDGGMKKLGDDPTSGLEVTLRSGRFGPYIQLGEAVN--------GEKPKRAGIPKGITPDDIDLQRALGLLSLPREVGKHPEDGEPILAGVGRFGPYVQHGKTYASLETGDDVLTVGLNRAVTLIAEKKLKPGKNRRFGADPGRPLGDHPDKGGPVVVKNGRYGPYVSHDGVNATLPSDMVPDTVTLEQALPLLDARAAQGVGA--RKKKPAKPGKSTAKKAA 862          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A833GH26_9HYPH (DNA topoisomerase 1 n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GH26_9HYPH)

HSP 1 Score: 605 bits (1559), Expect = 5.330e-207
Identity = 296/413 (71.67%), Postives = 346/413 (83.78%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAG-MRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPARKEAA 1236
            G AL+K+ I+AT HFTEPPPR+SEA+LVKRMEELGIGRPSTYASIL VL+DRGYVRLDKKRL+PEDKGR++ AFLESFF +YVEYDFTA LEEQLD V+NNE+ W+DLLRDFW GF+ AVGEIK+LRIT V+DAL+ +LAPH+FPPRADGT  R+CPNC  G++ LK+GRFG F+GC+ YPECR+TRQLS G +GAG G  R LG DP+TGLEV+VRSGRFG YLQLGE           G KPKRASLPK VS  EIELDRA+ LLSLPR +G HP+D EPI+ GVGRFGPYV+H KTYANLE GDDVL IGLNRAVTLI EKKLKP+KGRRFG  PG+ +GEHP KGG +VAKNGRYGPYVSH+GVNATLPADKT ++IT++EA+AL+DARA  GGG  ++  + A++  A
Sbjct:  450 GEALSKQSISATQHFTEPPPRFSEAALVKRMEELGIGRPSTYASILAVLKDRGYVRLDKKRLMPEDKGRIVVAFLESFFQKYVEYDFTALLEEQLDKVSNNELFWQDLLRDFWEGFTAAVGEIKDLRITQVLDALNDLLAPHIFPPRADGTPARQCPNCGEGQLSLKVGRFGAFIGCSRYPECRFTRQLSAGENGAGVGGARVLGTDPQTGLEVSVRSGRFGPYLQLGEG--------GDGEKPKRASLPKGVSPDEIELDRAIGLLSLPRTVGRHPEDGEPILAGVGRFGPYVQHGKTYANLEEGDDVLNIGLNRAVTLIAEKKLKPSKGRRFGPAPGRPLGEHPDKGGEVVAKNGRYGPYVSHDGVNATLPADKTADSITLEEAVALIDARAASGGGKRTKAAKAAKQPKA 854          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A537UFQ1_9PROT (DNA topoisomerase 1 n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UFQ1_9PROT)

HSP 1 Score: 598 bits (1542), Expect = 9.700e-205
Identity = 296/417 (70.98%), Postives = 345/417 (82.73%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSV--GADGAGAGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPARKEAAPKA 1245
            G AL KR+I A  HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DRGYVR++KKRL+PEDKGRVLTAFLESFF+RYVEYDFTA LEEQLD ++NNEMAWRDLLRDFW  F+ AVG+IKELR+T VIDALD MLAPHLFPPRADG DPRKCP+C TG++ LKLG+FGGF+GCTNYP+CRYTR L++  G  G   GM+KLGEDP +G EVT+RSGRFG Y+QLGE  +        G KPKR  LPK +SA +++LDRAL LLSLPREIG +P D EPI+ GVGRFGPYV+H KTYANL AG+DVLTIGLNRAV LI+EK+ K   GR  GADPG+ +G+HP+KGG IV K+GRYGPY SH+GVNATLPAD +PETIT+++A+ LL+AR  +GG   +  K  A  +AAPKA
Sbjct:  457 GEALAKRKIDAGQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRIEKKRLVPEDKGRVLTAFLESFFARYVEYDFTAGLEEQLDRISNNEMAWRDLLRDFWREFTAAVGDIKELRVTQVIDALDEMLAPHLFPPRADGADPRKCPSCATGRLSLKLGKFGGFIGCTNYPDCRYTRPLALANGNGGPENGMKKLGEDPASGPEVTLRSGRFGPYIQLGEATE--------GEKPKRTGLPKSLSAEDVDLDRALGLLSLPREIGKYPGDGEPIMAGVGRFGPYVQHGKTYANLTAGEDVLTIGLNRAVALIDEKRAKRKSGR--GADPGRALGDHPEKGGRIVVKSGRYGPYASHDGVNATLPADFSPETITLEQAVGLLEARRARGGKRRAGSKVQAAHKAAPKA 863          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A537NJS6_9PROT (DNA topoisomerase I (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NJS6_9PROT)

HSP 1 Score: 585 bits (1508), Expect = 2.780e-203
Identity = 285/403 (70.72%), Postives = 338/403 (83.87%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAG-AGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLK-PNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSS 1203
            G  L KR+I A  HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DRGYVR+DKKRL+PEDKGRVLTAFLESFF+RYVEYDFTA LEEQLD ++NNE+AWRDLLRDFW  F+ AVG+IKELR+  VIDALD MLAPHLFPPR DG+  RKCPNCE G++ LKLG+FGGF+GC+NYPECRYTRQL+ G  GA   G++KLGEDP++GLEVT+RSGRFG YLQLGE  +        G KPKRA LPK  S  ++EL+RALALLSLPRE+G HPDD EPI+ G+GRFGPYV+H +TYANL A +DVL+IG NRAVTLIEEK+ + P KGR FGA  G+++GEHP+KGG ++ ++GRYGPYVSH G+NATL +D TPET+++++AI LLDARA + G + S
Sbjct:  192 GERLEKRKIDAGQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRIDKKRLVPEDKGRVLTAFLESFFARYVEYDFTAGLEEQLDRISNNEIAWRDLLRDFWREFTVAVGDIKELRVAEVIDALDEMLAPHLFPPREDGSVARKCPNCEAGRLSLKLGKFGGFIGCSNYPECRYTRQLAPGNGGAADGGIKKLGEDPQSGLEVTLRSGRFGPYLQLGEAAE--------GEKPKRAGLPKGTSPDDVELERALALLSLPREVGKHPDDGEPIVAGIGRFGPYVQHGRTYANLTADEDVLSIGSNRAVTLIEEKRARGPRKGR-FGAQSGRSLGEHPEKGGPVLVRSGRYGPYVSHGGINATLTSDLTPETVSLEQAIGLLDARAARTGTAKS 585          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A1Q7BVR3_9PROT (DNA topoisomerase 1 n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BVR3_9PROT)

HSP 1 Score: 593 bits (1529), Expect = 6.530e-203
Identity = 291/424 (68.63%), Postives = 349/424 (82.31%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGA---GMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGG---SSSRRKRPARKEAAPKAAXP 1254
            G +L KR+I A+ HFTEPPPRYSEASLVK MEELGIGRPSTYASILQVL+DRGYVR++K+RL+PEDKGRVLTAFLESFF+RYVEYDFTA LEEQLD ++NNE+AWRDLLRDFW  F+ AVG+IKELR+  VID LD MLAPHLFPPR DG DPRKCP+CE G++ LKLG+FGGF+GC+NYPECRYTRQL+  ++G GA   GM+KLGEDP TGLEVT+RSGRFG Y+QLGE           G KPKRA+LPK +SA ++ELDRAL LLSLPRE+G H DD EPII GVGRFGPYV+H KTYANL   DDVLT+GLNRAV LIEEK+ +  +  R GADPG+ +GEHP KGG IV K GRYGPY SH+G+NATLPA  +P+++T+++A+ LL+AR+ +GGG   ++++ + PARK  + KAA P
Sbjct:  450 GESLAKRKIDASQHFTEPPPRYSEASLVKGMEELGIGRPSTYASILQVLKDRGYVRIEKRRLLPEDKGRVLTAFLESFFARYVEYDFTAGLEEQLDRISNNEIAWRDLLRDFWREFTAAVGDIKELRVAQVIDTLDEMLAPHLFPPRPDGADPRKCPSCEAGRLSLKLGKFGGFIGCSNYPECRYTRQLAP-SNGNGAPENGMKKLGEDPATGLEVTLRSGRFGPYIQLGETTN--------GEKPKRAALPKGLSADDVELDRALGLLSLPREVGKHSDDGEPIIAGVGRFGPYVQHGKTYANLTTEDDVLTVGLNRAVALIEEKRARRGQKGRRGADPGRALGEHPDKGGPIVVKTGRYGPYASHDGINATLPAHLSPDSVTLEQALGLLEARSARGGGKKRAAAKPRDPARKAESKKAAKP 864          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A521VYI6_9HYPH (DNA topoisomerase 1 n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521VYI6_9HYPH)

HSP 1 Score: 585 bits (1507), Expect = 3.250e-199
Identity = 285/408 (69.85%), Postives = 338/408 (82.84%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPAR 1224
            G AL +R++  T HFTEPPPR+SEASLVKRMEELGIGRPSTYASILQVL+DR YVRLDKKRL+PEDKGRV+ AFLE+FF+ YVEYDFTA+LEEQLD ++NNE+AWR++LRDFW  F  AV +IK+LR+T+V+DALD MLAPH+FPPR DG+DPR CP C TG++ LK+GRFG FVGCTNYPECR+TR L+ G +G  A  R LG DPETGL+VTVR+GRFG Y+QLGE  KD       G KPKRASLPK ++  +IELD AL LLSLPRE+G HP+  E I  G+GRFGPYV+H+KTYA+LEAGDDVLT+G+NRAVTLI EK+ K    RRFGADPGK++GEHP +GG I  KNGRYG YVSHNGVNATLPADKTPETIT++EA+ L++ARA KGGG   + K PA+
Sbjct:  450 GEALERRDLTVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRSYVRLDKKRLVPEDKGRVVVAFLENFFAHYVEYDFTASLEEQLDRISNNEIAWREVLRDFWRDFIAAVEDIKDLRVTHVLDALDEMLAPHIFPPREDGSDPRLCPTCGTGRLNLKIGRFGAFVGCTNYPECRHTRPLASGGEGESA-TRSLGVDPETGLDVTVRAGRFGPYIQLGE-AKD-------GEKPKRASLPKGMTPGDIELDVALGLLSLPREVGHHPETGEIIKAGIGRFGPYVQHEKTYASLEAGDDVLTVGINRAVTLIAEKQAKGPGRRRFGADPGKSLGEHPTQGGVITVKNGRYGAYVSHNGVNATLPADKTPETITLEEAVGLIEARAAKGGGKKVKAKAPAK 848          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A345ZS69_9HYPH (DNA topoisomerase 1 n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZS69_9HYPH)

HSP 1 Score: 583 bits (1503), Expect = 1.380e-198
Identity = 276/393 (70.23%), Postives = 329/393 (83.72%), Query Frame = 1
Query:   10 LTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKG 1188
            L K+ I ++ HFTEPPPRYSEA+LVKRMEELGIGRPSTYA+ILQVL+DRGYVR+DKKRL+PEDKGRV+  FLESFF RYVEYDFTANLEEQLD ++NNE+ W+ +L+DFW  F GAV +IKELR+T+V+DAL+ +LAPH+FPPR DG DPR CPNC  GK+ LKLGRFG F+GC+NYPEC YTRQ+S GA G  +G + LGEDPETGLEVT+R GRFG YLQLGE  K+ + PK     PKRA +PK VS  +I+L++AL LL+LPR++G HP+D E II G+GRFGPYVKH KTYANLE GD+V++IGLNRAVTLI EKKLKP KGRRFGADPGK +G+HP KGG IV K GRYGPYVSH+GVNATL  D TPE IT+++A++L+DARA  G
Sbjct:  453 LAKQAINSSQHFTEPPPRYSEAALVKRMEELGIGRPSTYAAILQVLQDRGYVRIDKKRLMPEDKGRVVVGFLESFFQRYVEYDFTANLEEQLDRISNNEIDWKKVLQDFWVDFIGAVNDIKELRVTHVLDALNDLLAPHIFPPREDGLDPRTCPNCANGKLSLKLGRFGAFIGCSNYPECNYTRQMSQGAQGGVSGTKVLGEDPETGLEVTLRGGRFGPYLQLGEAAKEKDAPK-----PKRAGIPKGVSPDDIDLEKALGLLALPRDVGPHPEDGEMIIAGIGRFGPYVKHGKTYANLEDGDEVMSIGLNRAVTLIAEKKLKPGKGRRFGADPGKELGQHPDKGGPIVLKKGRYGPYVSHDGVNATLTGDVTPENITLEQAVSLIDARAAAG 840          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: J6LGE5_9RHOB (DNA topoisomerase 1 n=1 Tax=Rhodovulum sp. PH10 TaxID=1187851 RepID=J6LGE5_9RHOB)

HSP 1 Score: 583 bits (1502), Expect = 3.050e-198
Identity = 289/416 (69.47%), Postives = 340/416 (81.73%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGMRK-LGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRRKRPARKEAAPKA 1245
            G  LTK+ +  T HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DR YVRL+K+RLIPED+GR++ AFLESFF+RYVEYDFTA+LEEQLD V+NNEM W +L+R FW GF+GAV EIK+L+I++VIDALDAMLAPHLFP R DGTDPR C  C TG++ LKLGR+G F+GC+NYPECRYTR  S+GADG      K LG+DPETGL+VT+++GRFG YLQLGE      N  DK   PKRA LPK    S ++LD AL LLSLPRE+G HP+D EPI+ G+GRFG YV+H KTYANLE GD+VL IGLNRAVTL+ EK  K  KGRRFG DPG+ +G+HP+KGG+IV K GRYGPYVSH+G+NATLP DKTPETIT+DEA+AL+ ARAEK GG+  +RK PAR + A KA
Sbjct:  451 GEPLTKQSLDVTQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRNYVRLEKRRLIPEDRGRIVVAFLESFFARYVEYDFTADLEEQLDRVSNNEMEWHELMRRFWHGFAGAVEEIKDLKISDVIDALDAMLAPHLFPAREDGTDPRVCTTCGTGRLSLKLGRYGAFIGCSNYPECRYTRPFSLGADGGAEVEDKVLGQDPETGLDVTLKNGRFGPYLQLGEA-----NGSDK---PKRAGLPKGTDPSTVDLDMALGLLSLPREVGKHPEDGEPIVAGIGRFGAYVQHGKTYANLEPGDEVLAIGLNRAVTLLAEKIAKGGKGRRFGGDPGRALGDHPEKGGSIVVKAGRYGPYVSHDGINATLPKDKTPETITLDEAVALIAARAEKTGGA--KRKAPARAKKAAKA 856          
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Match: A0A327KG16_9HYPH (DNA topoisomerase 1 n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327KG16_9HYPH)

HSP 1 Score: 574 bits (1480), Expect = 4.650e-195
Identity = 283/405 (69.88%), Postives = 330/405 (81.48%), Query Frame = 1
Query:    1 GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLRDRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVANNEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADGTDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSV-GADGAG-AGMRKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPKDVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYANLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGTIVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSSSRR 1209
            G  L K  + AT HFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVL+DR YVRLDK+RL+PED+GR++ AFLESFFSRYVEYDFTA+LEEQLD V+NNE+ W +LLR FWT F+GAV  IK+L+I+ VIDALDAMLAPHLFPPR DGTDPR+C  C TG++ LKLGR+G F+GC+NYPECRYTR  SV GADGA  A  R LG+DPETGL+VT+R GRFG Y+QLGE         + G KPKRA LP+    + ++LD AL LLSLPRE+G HP+D EPI+ G+GRFG YV+H KTYANLEAGD+VLTIGLNRAVTL+ EK  K  +G+RFG DPG+ +G+HP  GGTIV K GRYGPYVSH+GVNATLP DKTPETIT+ EA+ LL ARAEK GG+  R+
Sbjct:  451 GETLKKLALDATQHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLKDRNYVRLDKRRLVPEDRGRIVVAFLESFFSRYVEYDFTADLEEQLDRVSNNEIVWHELLRRFWTDFTGAVDSIKDLKISEVIDALDAMLAPHLFPPRPDGTDPRQCTTCGTGRLSLKLGRYGAFLGCSNYPECRYTRPFSVPGADGAAEAENRVLGQDPETGLDVTLRVGRFGPYIQLGEA--------NGGDKPKRAGLPRGTDPASVDLDMALGLLSLPREVGKHPEDGEPILAGIGRFGAYVQHGKTYANLEAGDEVLTIGLNRAVTLLAEKLAKGPRGKRFGGDPGRPLGDHPALGGTIVVKAGRYGPYVSHDGVNATLPKDKTPETITLAEAVDLLTARAEKTGGAPKRK 847          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12550.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EW25_9HYPH1.040e-22376.96DNA topoisomerase 1 n=1 Tax=Rhodoplanes sp. Z2-YC6... [more]
A0A6N7GY09_9HYPH1.330e-21372.01DNA topoisomerase 1 n=1 Tax=Hyphomicrobiales bacte... [more]
A0A833GH26_9HYPH5.330e-20771.67DNA topoisomerase 1 n=1 Tax=Pseudorhodoplanes sp. ... [more]
A0A537UFQ1_9PROT9.700e-20570.98DNA topoisomerase 1 n=4 Tax=Alphaproteobacteria ba... [more]
A0A537NJS6_9PROT2.780e-20370.72DNA topoisomerase I (Fragment) n=1 Tax=Alphaproteo... [more]
A0A1Q7BVR3_9PROT6.530e-20368.63DNA topoisomerase 1 n=1 Tax=Alphaproteobacteria ba... [more]
A0A521VYI6_9HYPH3.250e-19969.85DNA topoisomerase 1 n=1 Tax=Xanthobacteraceae bact... [more]
A0A345ZS69_9HYPH1.380e-19870.23DNA topoisomerase 1 n=1 Tax=Pseudolabrys taiwanens... [more]
J6LGE5_9RHOB3.050e-19869.47DNA topoisomerase 1 n=1 Tax=Rhodovulum sp. PH10 Ta... [more]
A0A327KG16_9HYPH4.650e-19569.88DNA topoisomerase 1 n=2 Tax=Rhodoplanes piscinae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12550contigP-wetherbeei_contig12550:613..1971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1187851.A33M_2443
Preferred nametopA
PFAMsTopoisom_bac,Toprim,Toprim_C_rpt,zf-C4_Topoisom
Model size1359
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03168
Hectar predicted targeting categoryother localisation
Exons1
Evalue5e-199
EggNOG OGsCOG0550@1|root,COG0550@2|Bacteria,1MUFZ@1224|Proteobacteria,2TRGN@28211|Alphaproteobacteria,3FCQB@34008|Rhodovulum
EC5.99.1.2
DescriptionReleases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Cds size1359
COG categoryG
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185952.6840708-CDS-P-wetherbeei_contig12550:612..19711683185952.6840708-CDS-P-wetherbeei_contig12550:612..1971Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12550 613..1971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12550.1.1prot_P-wetherbeei_contig12550.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12550 613..1971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12550.1.1

>prot_P-wetherbeei_contig12550.1.1 ID=prot_P-wetherbeei_contig12550.1.1|Name=mRNA_P-wetherbeei_contig12550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=453bp
GNALTKREIAATPHFTEPPPRYSEASLVKRMEELGIGRPSTYASILQVLR
DRGYVRLDKKRLIPEDKGRVLTAFLESFFSRYVEYDFTANLEEQLDLVAN
NEMAWRDLLRDFWTGFSGAVGEIKELRITNVIDALDAMLAPHLFPPRADG
TDPRKCPNCETGKIGLKLGRFGGFVGCTNYPECRYTRQLSVGADGAGAGM
RKLGEDPETGLEVTVRSGRFGTYLQLGEIVKDPNNPKDKGTKPKRASLPK
DVSASEIELDRALALLSLPREIGLHPDDREPIIGGVGRFGPYVKHDKTYA
NLEAGDDVLTIGLNRAVTLIEEKKLKPNKGRRFGADPGKTVGEHPQKGGT
IVAKNGRYGPYVSHNGVNATLPADKTPETITVDEAIALLDARAEKGGGSS
SRRKRPARKEAAPKAAAPKKAPARAAAKPKKRAAASGAAKIGRKSKPSEA
AE*
back to top

mRNA from alignment at P-wetherbeei_contig12550:613..1971-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12550.1.1 ID=mRNA_P-wetherbeei_contig12550.1.1|Name=mRNA_P-wetherbeei_contig12550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig12550:613..1971- (Phaeothamnion wetherbeei SAG_119_79)
GGCAATGCGCTCACCAAGCGTGAGATCGCCGCGACACCGCATTTCACCGA GCCGCCGCCGCGCTATTCCGAAGCCTCGCTGGTCAAGCGCATGGAGGAAC TCGGCATCGGCCGGCCTTCGACCTATGCGTCGATCCTGCAGGTGCTGAGG GATCGCGGCTATGTGCGCCTGGATAAGAAGCGATTGATCCCCGAGGATAA GGGACGCGTGCTGACCGCGTTCCTGGAGAGCTTCTTCTCGCGCTACGTCG AATACGACTTCACCGCCAACCTGGAAGAGCAGCTCGATCTCGTCGCCAAC AACGAGATGGCCTGGCGCGACCTGTTGCGCGATTTCTGGACCGGGTTTTC CGGCGCGGTCGGTGAGATCAAGGAACTGCGCATCACCAACGTGATCGATG CGCTCGACGCCATGCTGGCGCCGCACCTGTTCCCGCCGCGTGCCGATGGC ACCGATCCGCGCAAGTGCCCGAATTGCGAAACCGGCAAGATCGGCCTGAA GCTCGGCCGCTTCGGCGGCTTTGTCGGCTGCACCAACTATCCGGAATGCC GCTACACGCGGCAACTTTCGGTTGGCGCCGACGGCGCCGGCGCCGGAATG CGCAAGCTCGGCGAGGATCCGGAGACCGGCCTCGAAGTCACCGTTCGGAG CGGCCGTTTCGGCACTTACCTGCAGCTTGGCGAAATCGTCAAAGACCCGA ACAATCCCAAGGACAAGGGCACGAAGCCCAAGCGCGCGAGCCTGCCCAAG GATGTATCGGCCAGCGAAATCGAACTCGACCGCGCACTCGCGCTTCTATC GCTGCCGCGCGAGATCGGCCTGCATCCGGATGACCGCGAGCCAATCATCG GCGGCGTCGGCCGTTTCGGCCCCTACGTGAAGCACGACAAGACCTACGCC AACCTCGAAGCCGGCGACGACGTGCTGACCATCGGCCTCAATCGTGCCGT CACGCTGATCGAGGAAAAGAAACTCAAACCCAACAAGGGTCGCCGCTTCG GCGCCGATCCCGGCAAGACCGTCGGCGAGCACCCGCAGAAGGGCGGCACC ATCGTCGCCAAGAACGGCCGCTACGGGCCTTACGTCAGCCACAACGGCGT CAACGCCACGCTGCCCGCTGACAAGACGCCTGAAACGATCACCGTCGACG AGGCGATCGCGCTGCTCGACGCCCGCGCCGAGAAGGGCGGCGGCTCTTCG TCGCGCCGCAAGCGTCCGGCCCGCAAGGAAGCGGCGCCGAAGGCTGCCGC ACCCAAGAAAGCGCCAGCGCGAGCCGCGGCCAAGCCGAAGAAGCGCGCCG CCGCCAGCGGCGCGGCCAAGATCGGGCGCAAGTCGAAGCCATCCGAGGCC GCCGAATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12550:613..1971-

>mRNA_P-wetherbeei_contig12550.1.1 ID=mRNA_P-wetherbeei_contig12550.1.1|Name=mRNA_P-wetherbeei_contig12550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig12550:613..1971- (Phaeothamnion wetherbeei SAG_119_79)
GGCAATGCGCTCACCAAGCGTGAGATCGCCGCGACACCGCATTTCACCGA
GCCGCCGCCGCGCTATTCCGAAGCCTCGCTGGTCAAGCGCATGGAGGAAC
TCGGCATCGGCCGGCCTTCGACCTATGCGTCGATCCTGCAGGTGCTGAGG
GATCGCGGCTATGTGCGCCTGGATAAGAAGCGATTGATCCCCGAGGATAA
GGGACGCGTGCTGACCGCGTTCCTGGAGAGCTTCTTCTCGCGCTACGTCG
AATACGACTTCACCGCCAACCTGGAAGAGCAGCTCGATCTCGTCGCCAAC
AACGAGATGGCCTGGCGCGACCTGTTGCGCGATTTCTGGACCGGGTTTTC
CGGCGCGGTCGGTGAGATCAAGGAACTGCGCATCACCAACGTGATCGATG
CGCTCGACGCCATGCTGGCGCCGCACCTGTTCCCGCCGCGTGCCGATGGC
ACCGATCCGCGCAAGTGCCCGAATTGCGAAACCGGCAAGATCGGCCTGAA
GCTCGGCCGCTTCGGCGGCTTTGTCGGCTGCACCAACTATCCGGAATGCC
GCTACACGCGGCAACTTTCGGTTGGCGCCGACGGCGCCGGCGCCGGAATG
CGCAAGCTCGGCGAGGATCCGGAGACCGGCCTCGAAGTCACCGTTCGGAG
CGGCCGTTTCGGCACTTACCTGCAGCTTGGCGAAATCGTCAAAGACCCGA
ACAATCCCAAGGACAAGGGCACGAAGCCCAAGCGCGCGAGCCTGCCCAAG
GATGTATCGGCCAGCGAAATCGAACTCGACCGCGCACTCGCGCTTCTATC
GCTGCCGCGCGAGATCGGCCTGCATCCGGATGACCGCGAGCCAATCATCG
GCGGCGTCGGCCGTTTCGGCCCCTACGTGAAGCACGACAAGACCTACGCC
AACCTCGAAGCCGGCGACGACGTGCTGACCATCGGCCTCAATCGTGCCGT
CACGCTGATCGAGGAAAAGAAACTCAAACCCAACAAGGGTCGCCGCTTCG
GCGCCGATCCCGGCAAGACCGTCGGCGAGCACCCGCAGAAGGGCGGCACC
ATCGTCGCCAAGAACGGCCGCTACGGGCCTTACGTCAGCCACAACGGCGT
CAACGCCACGCTGCCCGCTGACAAGACGCCTGAAACGATCACCGTCGACG
AGGCGATCGCGCTGCTCGACGCCCGCGCCGAGAAGGGCGGCGGCTCTTCG
TCGCGCCGCAAGCGTCCGGCCCGCAAGGAAGCGGCGCCGAAGGCTGCCGC
ACCCAAGAAAGCGCCAGCGCGAGCCGCGGCCAAGCCGAAGAAGCGCGCCG
CCGCCAGCGGCGCGGCCAAGATCGGGCGCAAGTCGAAGCCATCCGAGGCC
GCCGAATAA
back to top