mRNA_P-wetherbeei_contig12549.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12549.1.1
Unique NamemRNA_P-wetherbeei_contig12549.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A835YSQ9_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSQ9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.090e-32
Identity = 70/157 (44.59%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   10 GTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYF-AFDSEVAGLLGDVRFVKSSVEAQMHVPLVDFGRSVPNTIR-PVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            G HAL  E  WR+V+P RH  VPYA AAS +V+ E   PS++ S+ Y + QD RD    P  G Y  A   E A   GDV F+K  +  Q H+  VD      +    P++L +C   G +RP+G D  +PARI+DR+FLGGP++LRGF+  G GPR
Sbjct:  187 GAHALTGEMTWRDVMPRRHPTVPYAHAASLSVLRESR-PSVRSSMRYAYTQDGRDSPYVPTVGPYLQASHREAAVPPGDVSFLKGHIALQQHMSFVDLAPIFLSVNPLPISLGVCLGLGAVRPFGSDAGKPARISDRYFLGGPMMLRGFKVAGTGPR 342          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A2D4CD39_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD39_PYTIN)

HSP 1 Score: 129 bits (324), Expect = 8.960e-32
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    7 GGTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPL--VDFGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            GG H L     WR+++P R A +P A  AS +V+ E + PS K S+ Y F+ D R++ + P  G  F + +E+AGL+GDVRFVK+ V AQ H+ +  V FG  +      ++ +     G ++ YG D  RP R++DRFFLGGPL +RGF   G+GPR
Sbjct:  175 GGFHELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAM-PSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI------LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPR 325          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A2D4BF57_PYTIN (Sorting and assembly machinery component 50 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF57_PYTIN)

HSP 1 Score: 129 bits (324), Expect = 9.540e-32
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 1
Query:    7 GGTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPL--VDFGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            GG H L     WR+++P R A +P A  AS +V+ E + PS K S+ Y F+ D R++ + P  G  F + +E+AGL+GDVRFVK+ V AQ H+ +  V FG  +      ++ +     G ++ YG D  RP R++DRFFLGGPL +RGF   G+GPR
Sbjct:  153 GGFHELSLNLGWRDIIPRRDAKIPTAFRASPSVIAEAM-PSTKASIKYVFKDDTRNNAVLPTDGGLFQYSTEIAGLVGDVRFVKAEVAAQKHIGIGPVLFGHPI------LSFSFATHLGAIKSYGSDEHRPTRLSDRFFLGGPLSVRGFHHKGIGPR 303          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A8K1CC02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC02_PYTOL)

HSP 1 Score: 125 bits (313), Expect = 6.340e-31
Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    7 GGTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPL--VDFGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            GG H L     WR+++P R + +P A  AS +++ E L PS K S+ Y FR D R++ + P  G  F + +EVAG+ GDVRF+K+ V AQ H  L  + FG  + N       +     G +  YG D  RP R++DRFFLGGPL +RGF   G+GPR
Sbjct:  195 GGFHELSLNLGWRDIIPRRDSRIPTAFRASPSIIAEAL-PSTKTSLKYVFRDDTRNNLVVPTAGGLFQYSTEVAGIFGDVRFIKAEVAAQKHFGLGPIVFGHPILN------FSFATQFGAVNAYGVDEHRPTRLSDRFFLGGPLSVRGFNHKGIGPR 345          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A485LIX1_9STRA (Aste57867_21946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIX1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.260e-30
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = 1
Query:   10 GTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPLVDFGRSVPNTIRPVALNLCASA--GCMRPYGGDR--PARINDRFFLGGPLVLRGFQPFGVGPR 468
            G H L     WR+++P R+  +P   AAS  ++ E + PS K S+ Y +  D+R++   P TG      +EVAGL GDV+FVK+  E Q +VP+     + P       LNL  S+  G +R YG DR  PARI+DRFFLGGPL LRGF   GVGPR
Sbjct:  188 GVHDLAFNLGWRDIVPVRNKKIPNTYAASPGIMAEAV-PSTKSSIKYTYNDDQRNNSTLPTTGRLLRASAEVAGLWGDVQFVKAEAEVQHNVPIGPIAYNNP------ILNLMLSSRFGAVRSYGADRERPARISDRFFLGGPLSLRGFNHKGVGPR 337          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A1V9ZEL1_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEL1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.600e-30
Identity = 69/155 (44.52%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   16 HALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPL--VDFGRSVPNTIRPVALNLCASAGCMRPYGGDR--PARINDRFFLGGPLVLRGFQPFGVGPR 468
            H L     WR+++P R+  +P   AAS +++ E   PS K SV Y +  D+R+D   P  G       EVAGL GDV FVK  VE Q H P+    F   + N      L+L +  G ++ YG DR  PARI+DRFFLGGPL LRGF   GVGPR
Sbjct:  187 HELSMNLGWRDIVPVRNKKIPSTYAASPSIMAEA-EPSTKSSVKYVYNDDQRNDAALPTAGRLLRTSLEVAGLWGDVNFVKGEVEMQRHYPIGPTAFNHPILN------LSLSSRVGAVKSYGADRHQPARISDRFFLGGPLTLRGFNHKGVGPR 334          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: W2IAU5_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2IAU5_PHYPR)

HSP 1 Score: 121 bits (304), Expect = 5.820e-30
Identity = 69/158 (43.67%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   10 GTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHV---PLVDFGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            G H L     WR++LP R + +P A  AS +++ E + PS K SV Y F  D R++ + P  G  F + +E+AGL+GDV+FVK+ VE Q HV   P V FG  + N       +L    G ++ YG +  RPARI+DRFFLGGP+ +RGF   G+GPR
Sbjct:  198 GVHDLSLNVGWRDLLPRRDSKIPTAYRASPSILAEAM-PSTKTSVKYVFTDDNRNNVVYPTAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHVAVGPAV-FGFPILN------FSLSCHLGTVKSYGSEQHRPARISDRFFLGGPMNVRGFNHKGIGPR 347          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: H3GJ66_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GJ66_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 6.630e-30
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 1
Query:   10 GTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPLVDFGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            G H L     WR++LP R + +P A  AS +++ E + PS K SV Y F  D+R++ + P  G  F + +E+AGL+GDV+FVK+ VE Q HV L      V N    +  +L    G ++ YG +  RPARI+DRFFLGGP+ +RGF   G+GPR
Sbjct:  200 GVHDLSLNVGWRDLLPRRDSKIPTAYRASPSILAEAM-PSTKTSVKYVFTDDKRNNVVYPTAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHVAL----GPVLNGFPILNFSLSYHLGTVKSYGSEQNRPARISDRFFLGGPMNVRGFNHKGIGPR 349          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: M4BJR2_HYAAE (Omp85 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJR2_HYAAE)

HSP 1 Score: 122 bits (306), Expect = 7.520e-30
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   10 GTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPLVD--FGRSVPNTIRPVALNLCASAGCMRPYGGD--RPARINDRFFLGGPLVLRGFQPFGVGPR 468
            G H L     WR++LP R + +P A  AS +++ E + PS K SV Y F  D RD+ + P  G  F + +E+AGL+GDV+FVK+ VE Q H+      FG  + N       +L    G ++ YG D  RPARI+DRFFLGGP+ +RGF   G+GPR
Sbjct:  212 GVHELSLNVGWRDLLPRRDSKIPTAYRASPSILAEAM-PSTKTSVKYVFTDDNRDNIVYPVAGGLFKYTTEIAGLVGDVKFVKAEVEGQKHMAAGPEMFGFPILN------FSLSYHLGTVKSYGSDQNRPARISDRFFLGGPMNVRGFNHKGIGPR 361          
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Match: A0A1V9ZWW2_9STRA (Sorting and assembly machinery component 50 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWW2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.510e-29
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   16 HALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGYRFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPLVDFGRSVPNTIRPVALNLCASAGCMRPYGGDR--PARINDRFFLGGPLVLRGFQPFGVGPR 468
            H L     WR+++P R+  +P   AAS +++ E   PS K SV Y +  D+R+D   P +G       EVAGL GDV FVK  VE Q H P+     + P     + L+L +  G ++ YG D+  PARI+DRFFLGGPL LRGF   GVGPR
Sbjct:  187 HELAFNLGWRDIVPIRNKKIPSTYAASPSIMAEA-EPSTKSSVKYVYNDDQRNDSALPTSGRLLRTSLEVAGLWGDVNFVKGEVEVQRHYPIGPIAYNHPF----LNLSLSSRLGAVKSYGSDKQQPARISDRFFLGGPLTLRGFNHKGVGPR 334          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSQ9_9STRA4.090e-3244.59Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A2D4CD39_PYTIN8.960e-3242.41Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A2D4BF57_PYTIN9.540e-3242.41Sorting and assembly machinery component 50 n=1 Ta... [more]
A0A8K1CC02_PYTOL6.340e-3142.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LIX1_9STRA2.260e-3044.59Aste57867_21946 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZEL1_9STRA5.600e-3044.52Sorting and assembly machinery component 50 n=1 Ta... [more]
W2IAU5_PHYPR5.820e-3043.67Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
H3GJ66_PHYRM6.630e-3043.23Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]
M4BJR2_HYAAE7.520e-3043.31Omp85 domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A1V9ZWW2_9STRA1.510e-2943.79Sorting and assembly machinery component 50 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12549contigP-wetherbeei_contig12549:52..1218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000014145
PFAMsBac_surface_Ag,POTRA
Model size471
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue4e-32
EggNOG OGsCOG4775@1|root,KOG2602@2759|Eukaryota,1MBVU@121069|Pythiales
DescriptionSorting and assembly machinery component 50. Source PGD
Cds size471
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185952.4242475-CDS-P-wetherbeei_contig12549:51..2731683185952.4242475-CDS-P-wetherbeei_contig12549:51..273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12549 52..273 +
1683185952.437958-CDS-P-wetherbeei_contig12549:641..7451683185952.437958-CDS-P-wetherbeei_contig12549:641..745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12549 642..745 +
1683185952.4579775-CDS-P-wetherbeei_contig12549:1073..12181683185952.4579775-CDS-P-wetherbeei_contig12549:1073..1218Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12549 1074..1218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12549.1.1prot_P-wetherbeei_contig12549.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12549 52..1218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12549.1.1

>prot_P-wetherbeei_contig12549.1.1 ID=prot_P-wetherbeei_contig12549.1.1|Name=mRNA_P-wetherbeei_contig12549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
TRGGTHALRAEAAWREVLPARHAGVPYACAASRAVVMEGLSPSLKGSVGY
RFRQDRRDDRLAPATGSYFAFDSEVAGLLGDVRFVKSSVEAQMHVPLVDF
GRSVPNTIRPVALNLCASAGCMRPYGGDRPARINDRFFLGGPLVLRGFQP
FGVGPR*
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mRNA from alignment at P-wetherbeei_contig12549:52..1218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12549.1.1 ID=mRNA_P-wetherbeei_contig12549.1.1|Name=mRNA_P-wetherbeei_contig12549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig12549:52..1218+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCGGGGCGGCACGCACGCTCTGCGGGCGGAGGCGGCGTGGCGGGAGGT GCTGCCGGCGCGGCATGCCGGTGTGCCGTACGCGTGCGCAGCGTCCCGTG CTGTCGTGATGGAAGGATTGTCGCCGAGCCTGAAAGGCAGCGTCGGCTAC CGCTTCCGCCAGGACCGCCGGGACGACCGGCTGGCGCCGGCCACAGGCAG TTACTTTGCGTTCGACAGCGAGGTGCGCTTTTTGTTTTACGCTGCTTCGT GCTTCCCCTTGTCAGAGCTACTGTTGCTGCCATTGCTTGTCTGCGTTGAC ATTACTGTTGCCAATGGCCACATTTGCTGCTGCCGCCACAACCGCTGCTT TTGCTGCAGCTGCAGTAGGAGCTGTTTGTTTTGCCATTGCTCCTGTTGCC GCTGCTTGTTGCAGCTGCTGCCGCCGCTGATATTATCGTCGGTATATCTT CCAGATGGGCTGAGCCTCGGAAGCGAAGCCTGTTCATACCGCCTACGCCG CTGCGCTTGCAGCCTCCATGGCGCAAGCTTTTTGCGATTATTCATGCCGC TGCTTCTGGCCTCATATTACCCAAATCTTGGCAACATCAGGTGGCGGGGC TGTTGGGGGACGTACGATTCGTCAAGAGCTCTGTCGAGGCGCAGATGCAC GTGCCGCTGGTGGACTTTGGAAGATCCGTCCCGAATACCATCAGGTTGGT TCGGTTCGTCCCGGCGGCTTCATGGGTTAGTGTTTCTGCAATGGCGAATG GAGAAGTCAAGCAGCGGTTCGGCCTCTTCTCCAGGTCTTCTTACGCCTTT GTTCTTTTCGCTACCCACCTGTTTTTTGTTGCTTTTCCTGGTTCAGTGGG GTTCTATTTTTGCATTGAGAGCCAAGTTGCTTCCAAACATCTGCTTGAGC TGTTTCTGTCGACGCCGAGGCCATCCCCGCTCCCGCCGCTGACATTAACG TCGGCGTCGTCCTCGGTTCCGCCACCCCGCTGTTGTTGCTGTCGCCGCTG TCGCCGCCATGTCTCCTGGCAGGCCGGTGGCACTTAACCTGTGCGCGTCG GCGGGCTGCATGCGGCCGTACGGCGGGGACCGGCCCGCCCGCATCAACGA CCGGTTCTTTCTCGGCGGTCCGCTCGTGCTGCGGGGTTTTCAGCCGTTTG GCGTCGGCCCGAGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12549:52..1218+

>mRNA_P-wetherbeei_contig12549.1.1 ID=mRNA_P-wetherbeei_contig12549.1.1|Name=mRNA_P-wetherbeei_contig12549.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig12549:52..1218+ (Phaeothamnion wetherbeei SAG_119_79)
ACGCGGGGCGGCACGCACGCTCTGCGGGCGGAGGCGGCGTGGCGGGAGGT
GCTGCCGGCGCGGCATGCCGGTGTGCCGTACGCGTGCGCAGCGTCCCGTG
CTGTCGTGATGGAAGGATTGTCGCCGAGCCTGAAAGGCAGCGTCGGCTAC
CGCTTCCGCCAGGACCGCCGGGACGACCGGCTGGCGCCGGCCACAGGCAG
TTACTTTGCGTTCGACAGCGAGGTGGCGGGGCTGTTGGGGGACGTACGAT
TCGTCAAGAGCTCTGTCGAGGCGCAGATGCACGTGCCGCTGGTGGACTTT
GGAAGATCCGTCCCGAATACCATCAGGCCGGTGGCACTTAACCTGTGCGC
GTCGGCGGGCTGCATGCGGCCGTACGGCGGGGACCGGCCCGCCCGCATCA
ACGACCGGTTCTTTCTCGGCGGTCCGCTCGTGCTGCGGGGTTTTCAGCCG
TTTGGCGTCGGCCCGAGGTAA
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