mRNA_P-wetherbeei_contig12539.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12539.2.1
Unique NamemRNA_P-wetherbeei_contig12539.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: D8LI84_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI84_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.140e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   82 RRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEAV 201
            RRNSTST+Y+  HDT+SDPD DATIRCVCAV RAH+  A+
Sbjct:  290 RRNSTSTIYLAAHDTLSDPDLDATIRCVCAVLRAHMIAAL 329          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S2SV86_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV86_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.810e-10
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   76 MSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEAV 201
            M+RRNSTSTLYVG   TMS PD+DATI+CVC V RAH+ EAV
Sbjct:  187 MNRRNSTSTLYVG--STMSRPDKDATIKCVCTVIRAHMLEAV 226          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S0AG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AG02_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.880e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   82 RRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEA 198
            +RN+  TL+V    TMSDPD+DATI+C+C +YRAHI +A
Sbjct:   15 QRNTCGTLHVS--STMSDPDKDATIKCICGIYRAHIVQA 51          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: B7G6C6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6C6_PHATC)

HSP 1 Score: 56.2 bits (134), Expect = 1.420e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   73 VMSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEA 198
            + SRRN+  TLYVG   TMSDPD+DA+I+CVC V RAHI ++
Sbjct:  650 IGSRRNTCGTLYVG--STMSDPDKDASIKCVCGVLRAHILQS 689          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S2EB28_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EB28_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.610e-7
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   76 MSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEAV 201
            +++RN+  T+Y+G   TMS PD+DATI+CVC VYRAH+ ++V
Sbjct:  385 LTKRNTCGTIYIG--STMSAPDKDATIKCVCGVYRAHMLQSV 424          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S2I4W4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4W4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.200e-6
Identity = 21/42 (50.00%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   76 MSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEAV 201
            +++RN+  T+Y+G   TMS PD+DA+I+CVC V+RAH+ ++V
Sbjct:  217 LAKRNTCGTIYIG--STMSAPDKDASIKCVCGVFRAHLLQSV 256          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S1BXU3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXU3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.410e-6
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   82 RRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEA 198
            RRNS  TLYVG   TMS PD DATI+CVCAV R HI ++
Sbjct:  320 RRNSGGTLYVG--STMSVPDIDATIKCVCAVIRTHIVQS 356          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7S2VYN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYN1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.630e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   76 MSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHI 189
            +++RN+  T+YVG   TMS PD DATI+C+C +YRAH+
Sbjct:   83 LAKRNTCGTMYVG--STMSAPDIDATIKCICGLYRAHL 118          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A1Z5JPI1_FISSO (WW domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPI1_FISSO)

HSP 1 Score: 51.6 bits (122), Expect = 6.030e-6
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   82 RRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHI 189
            RRN+   LYVG   TMS PD DAT++C+C VYRAHI
Sbjct:  408 RRNTCGNLYVG--STMSTPDSDATLKCICGVYRAHI 441          
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Match: A0A7R9VHP5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VHP5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.090e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1
Query:   76 MSRRNSTSTLYVGPHDTMSDPDRDATIRCVCAVYRAHITEA 198
            ++ RN+  T+YV    TMS PD+DATI+CVC VYRAH+ +A
Sbjct:  772 LAARNTCGTIYVS--STMSAPDKDATIKCVCGVYRAHMLQA 810          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12539.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LI84_ECTSI4.140e-1172.50WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2SV86_9STRA6.810e-1073.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0AG02_9STRA9.880e-858.97Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
B7G6C6_PHATC1.420e-761.90Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2EB28_9STRA3.610e-754.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2I4W4_9STRA3.200e-650.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1BXU3_9STRA4.410e-666.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2VYN1_9STRA5.630e-655.26Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5JPI1_FISSO6.030e-663.89WW domain-containing protein n=1 Tax=Fistulifera s... [more]
A0A7R9VHP5_9STRA6.090e-656.10Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12539contigP-wetherbeei_contig12539:1458..1940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI84
PFAMsCyclin,Cyclin_N,WW
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.79e-12
EggNOG OGsKOG1675@1|root,KOG1675@2759|Eukaryota
Descriptionregulation of cyclin-dependent protein serine/threonine kinase activity
Cds size201
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185952.1873777-CDS-P-wetherbeei_contig12539:1457..14971683185952.1873777-CDS-P-wetherbeei_contig12539:1457..1497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12539 1458..1497 -
1683185952.2007573-CDS-P-wetherbeei_contig12539:1779..19401683185952.2007573-CDS-P-wetherbeei_contig12539:1779..1940Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12539 1780..1940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12539.2.1prot_P-wetherbeei_contig12539.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12539 1458..1940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12539.2.1

>prot_P-wetherbeei_contig12539.2.1 ID=prot_P-wetherbeei_contig12539.2.1|Name=mRNA_P-wetherbeei_contig12539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
GATGAAGAGGGGGPGSRRGSAASSVMSRRNSTSTLYVGPHDTMSDPDRDA
TIRCVCAVYRAHITEAV
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mRNA from alignment at P-wetherbeei_contig12539:1458..1940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12539.2.1 ID=mRNA_P-wetherbeei_contig12539.2.1|Name=mRNA_P-wetherbeei_contig12539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig12539:1458..1940- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCAACGGGAGCGGCGGGGGCGGGAGGCGGCGGCGGACCCGGGTCGCG GCGAGGGTCAGCGGCATCGAGCGTCATGTCGCGACGCAACAGCACAAGCA CGCTCTACGTCGGCCCGCACGACACAATGAGCGACCCGGACCGGGACGCC ACCATCCGCTGGTGAGTATTTGGAAAGGGGCTGACCCTGGTGGGTGCCAT TGTTACCATGCTGCTAGATCATGCTGGTCACGCTTCGCTCCCCTCACCCC AAGTAAACCAACACCTAGGGTGGTAGTCGTTACCTGCGCGGAATATGTCG CACGCCCATTAGGAGCCTTCGGTGTGCATATCCAATTAGCGATTCATGTC GGAGGGGTGGTTCTCAGTGGTCACACCATTGCATTCCCAACTGCGCATTT CCCTCCCCGCTCGTCCTTTCTCTTTATCTCCCGGCCCTGCCAGCGTGTGC GCCGTCTACCGCGCCCATATCACGGAAGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12539:1458..1940-

>mRNA_P-wetherbeei_contig12539.2.1 ID=mRNA_P-wetherbeei_contig12539.2.1|Name=mRNA_P-wetherbeei_contig12539.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig12539:1458..1940- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCAACGGGAGCGGCGGGGGCGGGAGGCGGCGGCGGACCCGGGTCGCG
GCGAGGGTCAGCGGCATCGAGCGTCATGTCGCGACGCAACAGCACAAGCA
CGCTCTACGTCGGCCCGCACGACACAATGAGCGACCCGGACCGGGACGCC
ACCATCCGCTGCGTGTGCGCCGTCTACCGCGCCCATATCACGGAAGCGGT
G
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