mRNA_P-wetherbeei_contig12514.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12514.1.1
Unique NamemRNA_P-wetherbeei_contig12514.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12514.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12514contigP-wetherbeei_contig12514:420..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000018960
Model size585
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.75e-05
EggNOG OGs29PGU@1|root,2RWUF@2759|Eukaryota,1MFTD@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002780.1
DescriptionSource PGD
Cds size585
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185951.4402618-CDS-P-wetherbeei_contig12514:419..7311683185951.4402618-CDS-P-wetherbeei_contig12514:419..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12514 420..731 +
1683185951.4482124-CDS-P-wetherbeei_contig12514:948..10981683185951.4482124-CDS-P-wetherbeei_contig12514:948..1098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12514 949..1098 +
1683185951.4551353-CDS-P-wetherbeei_contig12514:1342..14651683185951.4551353-CDS-P-wetherbeei_contig12514:1342..1465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12514 1343..1465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12514.1.1prot_P-wetherbeei_contig12514.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12514 420..1465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12514.1.1

>prot_P-wetherbeei_contig12514.1.1 ID=prot_P-wetherbeei_contig12514.1.1|Name=mRNA_P-wetherbeei_contig12514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
DARVAVLERRLLEASTALGAAQVQARAWRAAAEGGPNSAAMATAAAAAMG
KDDRLQGSVGGAAAGSVQAGGGSGGGREAAAAAEEARHLKKEVSRLTAEL
ARAEEARRLLEAEVLTLQERLRQPSTPSEIQFRSLSAAVEAIERRAKERE
RELETMVAAQDGRLELLRLQALHEEELRAKDETILRFRAELDTLL
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mRNA from alignment at P-wetherbeei_contig12514:420..1465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12514.1.1 ID=mRNA_P-wetherbeei_contig12514.1.1|Name=mRNA_P-wetherbeei_contig12514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1046bp|location=Sequence derived from alignment at P-wetherbeei_contig12514:420..1465+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCGGGTTGCTGTGCTGGAGCGACGCTTACTCGAGGCCTCGACGGC
GCTGGGCGCGGCGCAGGTTCAGGCGCGTGCATGGCGGGCTGCCGCGGAAG
GCGGACCGAACTCTGCCGCCATGGCCACCGCTGCTGCAGCTGCGATGGGC
AAGGATGATAGGCTCCAAGGTAGTGTCGGCGGTGCAGCAGCTGGCTCCGT
CCAGGCGGGAGGTGGCAGCGGCGGCGGCCGAGAGGCTGCAGCGGCCGCCG
AAGAGGCGCGGCACTTGAAAAAGGAAGTGTCGAGGCTGACTGCCGAGCTC
GCCAGAGCGGAGGTGATGATCCGGAAAGCTGGAATTCGTTGTGATCGGTT
TCTTCGGCGCTATGGTAGCAAGTGACAGCGCCACTGCTGCTCTTATCTTC
GTTCGTTCCCAATTCTTTCGTTCCTTCCTGTTTGCCAAGGTTTTCTGACC
GAATCGCTGTTGTTGCTGCCAATCACTGCAACTAATACCAGTGCATCCCG
GCGCTCAACTCCTCTTCTTCCCCCCGCAGGAGGCGCGGCGGCTGCTGGAG
GCGGAGGTGCTGACGCTCCAGGAGCGGCTGCGGCAACCGTCGACTCCGAG
TGAGATACAGTTCCGATCGCTCTCTGCCGCCGTGGAGGCCATCGAGCGCC
GCGCCAAGGAGCGCGAGCGAGAGCTCGAGGTGAGCTGTCACGAGATTTTC
CCATATCTCCTTTCGCTTGAGTTGCACTGGACAGTTTGAGTCTTTCACTG
CCTTCCACTGCTCCCGTGCCGCTTTTGGCTTGAAACTGCGGCATTCCATT
TTGCCCGCGGAAGCGACCTTTCTGAGACGTGCTTGCCAACCGCAGTAGCC
TAGGCACTGCCGCCGTCTAACTCCTCTCTCGATCCGGTCCCATGCCGCGA
CCATCAACATCGCGCTCTTACAGACAATGGTGGCGGCGCAGGACGGTCGG
CTGGAGCTGCTGCGGCTGCAGGCGCTGCACGAGGAGGAGCTGCGGGCGAA
GGACGAGACCATCCTCCGCTTCCGTGCCGAGCTCGACACCCTCTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12514:420..1465+

>mRNA_P-wetherbeei_contig12514.1.1 ID=mRNA_P-wetherbeei_contig12514.1.1|Name=mRNA_P-wetherbeei_contig12514.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig12514:420..1465+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCGGGTTGCTGTGCTGGAGCGACGCTTACTCGAGGCCTCGACGGC
GCTGGGCGCGGCGCAGGTTCAGGCGCGTGCATGGCGGGCTGCCGCGGAAG
GCGGACCGAACTCTGCCGCCATGGCCACCGCTGCTGCAGCTGCGATGGGC
AAGGATGATAGGCTCCAAGGTAGTGTCGGCGGTGCAGCAGCTGGCTCCGT
CCAGGCGGGAGGTGGCAGCGGCGGCGGCCGAGAGGCTGCAGCGGCCGCCG
AAGAGGCGCGGCACTTGAAAAAGGAAGTGTCGAGGCTGACTGCCGAGCTC
GCCAGAGCGGAGGAGGCGCGGCGGCTGCTGGAGGCGGAGGTGCTGACGCT
CCAGGAGCGGCTGCGGCAACCGTCGACTCCGAGTGAGATACAGTTCCGAT
CGCTCTCTGCCGCCGTGGAGGCCATCGAGCGCCGCGCCAAGGAGCGCGAG
CGAGAGCTCGAGACAATGGTGGCGGCGCAGGACGGTCGGCTGGAGCTGCT
GCGGCTGCAGGCGCTGCACGAGGAGGAGCTGCGGGCGAAGGACGAGACCA
TCCTCCGCTTCCGTGCCGAGCTCGACACCCTCTTG
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