mRNA_P-wetherbeei_contig1251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1251.1.1
Unique NamemRNA_P-wetherbeei_contig1251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1251contigP-wetherbeei_contig1251:4516..6369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185951.2381456-CDS-P-wetherbeei_contig1251:4515..46121683185951.2381456-CDS-P-wetherbeei_contig1251:4515..4612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1251 4516..4612 -
1683185951.24716-CDS-P-wetherbeei_contig1251:6205..63691683185951.24716-CDS-P-wetherbeei_contig1251:6205..6369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1251 6206..6369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1251.1.1prot_P-wetherbeei_contig1251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1251 4516..6369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1251.1.1

>prot_P-wetherbeei_contig1251.1.1 ID=prot_P-wetherbeei_contig1251.1.1|Name=mRNA_P-wetherbeei_contig1251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
PPQSPPLTPPRSQSSLPPPPRSVAFPESLPPTPPRSPALPPSPMPPRSPA
LASAAGGNGSSHGHGGGHGGHGGGHGGGHGGGGGGGG
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mRNA from alignment at P-wetherbeei_contig1251:4516..6369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1251.1.1 ID=mRNA_P-wetherbeei_contig1251.1.1|Name=mRNA_P-wetherbeei_contig1251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1854bp|location=Sequence derived from alignment at P-wetherbeei_contig1251:4516..6369- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCGCAGTCGCCGCCGCTGACGCCGCCGCGATCTCAGTCATCACTGCC
GCCACCGCCCCGGTCAGTAGCGTTTCCGGAGTCGCTGCCGCCAACACCGC
CGCGGTCGCCAGCGCTGCCACCGTCGCCGATGCCGCCAAGATCCCCGGCA
CTGGCATCCGCGGCGTCGCCGTCGCAGCCCTCGTGTTCGCGGGCGCTGCC
ACCGCGGTCCCCGCCGCTGCCATCACGCTCGCCGGCTGGTTCTCCTTTCA
GCTCCGCGGCGCAAGCCCATAGTCTCCCGGCGGCAACTGGAATTTCTGCA
GAAGCGTTGTCACCGCTGGCTGCGGCCACGGTCCTGGCGTGCCCGCCAGC
GGCCGCGATGGCGCTCGAACTGCTCCGCGCCTTTGCGCACGCCGACGGCA
CACCGCTGGCGCGGGCGGCGGGCCCGCTGCTGGCGGTGGTTGCCGGCTGC
CTGCTGCCGCCGCTACGGCACGGCTGCCCGGTCAGCCTCGAGGGCGCCGC
CGCGTGCGGCCTCGCCGACACCCTTCTCGATTGTCTTGAGAGCCGCAGCC
TTTGCGGCGGCGACGGCAGCGGTAGCGGCGTTGGTGACTCTGGCGGCGTG
ACGCCGCCAGAGCGTGCCCTGCTGGGTTTGCTGGTGGCCACCGCTCGGTG
GCGCGTAACGTCTGAATCGCTGGAGCGATGGTTCGCCATAGCGGCTGGCG
GCGGGTATGCTGCTGATGTCCGAAAAGGCGGCAATGGCAGTGCTGGCGGC
GGAGGCAGCACCGGCAGCCGTCGTGTGGAAGTGCTGCGGGCGCTGGTGGA
GGCCTGTGAGGACCCGATGCATCCGCCGCCAGCCCCGGAGGCCGCTGCTC
TCGCCGTCCTCGCTGCCAGCGGCGGCGGGAAGAGGGCCAGCAACGTCAAG
CGGCTGCAGCCGCCGCCGTACTGCACCAGCGCCTTTTCTTCGGCGGCGTG
GATCGAATTTGGTGCTGCCACTGGCGCTGAGCGCGGCGGCAACAACGCTG
GTAGTAACGGTGGCAGCGACGATGGTAGCAAGGGGCTGCCCAGGAACGCC
TGCCTTTTCGTGGACACGCTGAGCCCAAAACCGCTCGAGCCACCGCCCGC
AGAATGGGACTGGGGCGGTGCCTCCAGCAGGGGCGCTGGGGCGGCGGCGG
GGGGGGCGGGCGCAGTGCCGCAGATGCACATGAGCTCATCACCGCCGCGT
CGCGGCAACAATGGTAGCACCAGCAGTGGCGGCATCGCTCCACCGCCGGC
CTCGGTGGTGGTGCCGCCACCACGGCCGGTGGTGGCGCGCTCGGCGTTGA
CCGCGGCGCTCTCGTCGTGGGCGCCGCCAGCGATGGCCGTTGAGGCGGCG
GCGATGCGGCGGCGCTTCGAAGAGGACACCACCTGGCGGGTGCGGGAGTG
GCCGCCGAAGACCGGCTACACGTTCGCCTGCTGGCTGTACATTCACTCCT
TCGGCGATCCTGTCGCTGCGGCCGAGGCGGCGGCCGTGGCGGGTGGCGGC
AGCACCGTCAATTCGCGAAAGAGCACCCCGGCCCACACACCTGCCCACGG
CCAAAGCCACGTTCACGGAGCGCACGGGCACGGACACGGGCACAGCAAAA
GCGGCGATGGGCATAATGCCGAGGCGTCGCCGACGCCGCCGTGGCTGCCG
CTGACGCTGCTCGAAGTGGAGGGCGAAGCCGCCGACCGCCCGCACGGCCG
CAGCGTTATCCGGATCGAGGTCGTCGCCGCGTCGTCCGCCGCGAACGGCA
CCGGCAGCGGCGGTAACGGCAGTAGCCACGGCCACGGGGGCGGTCACGGC
GGCCACGGCGGCGGCCACGGCGGCGGCCACGGCGGCGGCGGCGGCGGCGG
CGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1251:4516..6369-

>mRNA_P-wetherbeei_contig1251.1.1 ID=mRNA_P-wetherbeei_contig1251.1.1|Name=mRNA_P-wetherbeei_contig1251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig1251:4516..6369- (Phaeothamnion wetherbeei SAG_119_79)
CCCCCGCAGTCGCCGCCGCTGACGCCGCCGCGATCTCAGTCATCACTGCC
GCCACCGCCCCGGTCAGTAGCGTTTCCGGAGTCGCTGCCGCCAACACCGC
CGCGGTCGCCAGCGCTGCCACCGTCGCCGATGCCGCCAAGATCCCCGGCA
CTGGCATCCGCGGCCGGCGGTAACGGCAGTAGCCACGGCCACGGGGGCGG
TCACGGCGGCCACGGCGGCGGCCACGGCGGCGGCCACGGCGGCGGCGGCG
GCGGCGGCGGC
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