mRNA_P-wetherbeei_contig12507.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI001C459CF6 (OB-fold domain-containing protein n=1 Tax=Bordetella sp. BOR01 TaxID=2854779 RepID=UPI001C459CF6) HSP 1 Score: 157 bits (397), Expect = 1.850e-47 Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 1 Query: 1 MSQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 S AA P GPE+ Y D+LAQG F+IQ+C AC + VFYPR++CPHCGAD+L W+ SG GT+YSTTVVRRK E GGDY+V LVDL EG RMMSRV I PGAV IGM V+A + Sbjct: 3 QSTAAPPAGPEKHYHDQLAQGRFQIQRCQACAQAVFYPRMICPHCGADRLDWITPSGKGTIYSTTVVRRKAEHGGDYNVALVDLEEGVRMMSRVDGIAPGAVAIGMAVQAHV 114
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A261RI23_9BORD (DNA-binding protein n=3 Tax=Bordetella TaxID=517 RepID=A0A261RI23_9BORD) HSP 1 Score: 154 bits (390), Expect = 2.160e-46 Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1 Query: 4 SQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339 S +A P GPE+ Y+D+LA+G F+IQ+C AC + VFYPR+VCPHCG+D+L W SG GTVYSTTVVRR+PE GGDY+V L+DL EG R+MSRV I P AV IGM V+A +A Sbjct: 4 SMSAPPAGPEKHYRDQLAKGQFQIQRCQACARAVFYPRMVCPHCGSDQLAWATPSGKGTVYSTTVVRRRPEQGGDYNVALIDLEEGVRLMSRVQGIAPDAVSIGMAVQADVA 115
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A2T6J6A8_9BURK (Uncharacterized protein n=1 Tax=Acidovorax sp. 107 TaxID=2135638 RepID=A0A2T6J6A8_9BURK) HSP 1 Score: 153 bits (386), Expect = 9.920e-46 Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1 Query: 22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 PGP+ + LA+G FEIQ CSACG+HVFYPR +CPHCG+ +L WV SGAG VYS+T VRRKPE+GGDY+V LVDLAEGPR+MSR+ + P V+IGM+V+AR+ Sbjct: 12 PGPDALFAQALARGRFEIQHCSACGQHVFYPRALCPHCGSAQLDWVEPSGAGQVYSSTTVRRKPESGGDYNVALVDLAEGPRLMSRIDGVPPEQVRIGMRVRARV 116
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI0011A481C0 (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Extensimonas perlucida TaxID=2590786 RepID=UPI0011A481C0) HSP 1 Score: 152 bits (383), Expect = 2.750e-45 Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1 Query: 22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 PGP+ + LAQG FEIQ+C+ACG+HVFYPR +C HCG+ +L WV SGAG VYS+TVVRRKPEAGGDY+V L+DLAEGPR+MSRV I P V+IGM V+A++ Sbjct: 9 PGPDARFAAALAQGRFEIQRCAACGEHVFYPRALCTHCGSAQLDWVQPSGAGVVYSSTVVRRKPEAGGDYNVALIDLAEGPRLMSRVDGIAPAQVRIGMPVQAQV 113
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A556URW1_9BURK (DNA-binding protein n=4 Tax=Cupriavidus TaxID=106589 RepID=A0A556URW1_9BURK) HSP 1 Score: 151 bits (382), Expect = 4.290e-45 Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1 Query: 22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339 PGP++ Y + LA G F IQ C C +HVFYPR +CPHCG D L W A +G GTVYST+VVRRKP+AGGDY+VVLVDL EG RMMSRV I P V+IGM+VKAR+A Sbjct: 11 PGPDKQYAEALAAGQFRIQLCQDCHRHVFYPRNICPHCGGDALAWTAPAGTGTVYSTSVVRRKPDAGGDYNVVLVDLDEGVRMMSRVEGIAPADVRIGMRVKARVA 116
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A9IGQ7_BORPD (Uncharacterized protein n=2 Tax=Bordetella petrii TaxID=94624 RepID=A9IGQ7_BORPD) HSP 1 Score: 151 bits (381), Expect = 5.050e-45 Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1 Query: 10 AAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 AA P GPE+ Y D+LAQG F+IQ C AC + VFYPRV+CPHCG+ +L W+ SG GTVYSTTVVRRKPE GGDY+V L+DL EG RMMSRV I P AV IGM V+A + Sbjct: 6 AAPPAGPEKHYHDQLAQGRFQIQCCQACSQAVFYPRVICPHCGSGQLDWITPSGKGTVYSTTVVRRKPEHGGDYNVALIDLEEGVRMMSRVEGIAPEAVTIGMAVQASV 114
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A261QYJ6_9BORD (DNA-binding protein n=2 Tax=Bordetella TaxID=517 RepID=A0A261QYJ6_9BORD) HSP 1 Score: 150 bits (380), Expect = 6.340e-45 Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = 1 Query: 4 SQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 +Q+ + GP++ + D+LAQG F IQ C+AC +HVFYPR++CPHCG +L WVA SG GT+YSTTV+RR+PE GGDY V LVDL EG RMMSRV + P AVKIGM+V+A I Sbjct: 4 TQSTEAIGPDRYFHDRLAQGRFLIQHCAACSRHVFYPRMLCPHCGGSQLDWVAPSGRGTIYSTTVIRRRPEQGGDYHVALVDLEEGVRMMSRVEGVAPAAVKIGMQVQAAI 114
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI001E49DA56 (OB-fold domain-containing protein n=1 Tax=Bordetella petrii TaxID=94624 RepID=UPI001E49DA56) HSP 1 Score: 150 bits (380), Expect = 7.180e-45 Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = 1 Query: 1 MSQ--AAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 MSQ AA P GPE+ Y+D+L+QG F+IQ+C AC + VFYPRV+CPHCGA L W SG GTVYSTTVVRRK E GGDY+V LVDL EG RMMSRV ++ P AV IGM V+A I Sbjct: 1 MSQPTAAPPVGPEKHYQDQLSQGLFQIQRCQACSQAVFYPRVICPHCGAGDLAWFTPSGKGTVYSTTVVRRKAEHGGDYNVALVDLEEGVRMMSRVDDVAPAAVAIGMAVQASI 114
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A157S4H7_9BORD (Predicted nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Bordetella ansorpii TaxID=288768 RepID=A0A157S4H7_9BORD) HSP 1 Score: 150 bits (380), Expect = 7.880e-45 Identity = 72/110 (65.45%), Postives = 84/110 (76.36%), Query Frame = 1 Query: 7 QAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336 Q +QP GPE+ Y D L+QG F+IQ+C AC + VFYPR +CPHCG +L W SG GTVYSTTVVRR+ E GGDY+V LVDLAEGPRMMSRV I P AVKIGM V+ R+ Sbjct: 9 QGSQPAGPEKHYHDLLSQGRFQIQRCHACKQAVFYPRAICPHCGDPRLDWFTPSGKGTVYSTTVVRRRAEHGGDYNVALVDLAEGPRMMSRVDGIAPEAVKIGMAVQVRL 118
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A1F4C9B5_9PROT (DNA-binding protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C9B5_9PROT) HSP 1 Score: 150 bits (379), Expect = 9.000e-45 Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1 Query: 22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339 PGPE TY++ LA G F IQ+C C KHVFYPRV+CP CG+ KL W+ SG GTVYSTTV+RRK E+GGDY+V LV+L EGPR+MSRV + P VKIGM V ARIA Sbjct: 3 PGPELTYQNYLAAGEFRIQRCDQCAKHVFYPRVLCPACGSSKLSWIRPSGTGTVYSTTVMRRKAESGGDYNVCLVELNEGPRLMSRVEGVPPQEVKIGMAVNARIA 108 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12507.2.1 >prot_P-wetherbeei_contig12507.2.1 ID=prot_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp MSQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLback to top mRNA from alignment at P-wetherbeei_contig12507:1379..1717+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12507.2.1 ID=mRNA_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12507:1379..1717+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12507:1379..1717+ >mRNA_P-wetherbeei_contig12507.2.1 ID=mRNA_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12507:1379..1717+ (Phaeothamnion wetherbeei SAG_119_79)back to top |