mRNA_P-wetherbeei_contig12507.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12507.2.1
Unique NamemRNA_P-wetherbeei_contig12507.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI001C459CF6 (OB-fold domain-containing protein n=1 Tax=Bordetella sp. BOR01 TaxID=2854779 RepID=UPI001C459CF6)

HSP 1 Score: 157 bits (397), Expect = 1.850e-47
Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    1 MSQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
             S AA P GPE+ Y D+LAQG F+IQ+C AC + VFYPR++CPHCGAD+L W+  SG GT+YSTTVVRRK E GGDY+V LVDL EG RMMSRV  I PGAV IGM V+A +
Sbjct:    3 QSTAAPPAGPEKHYHDQLAQGRFQIQRCQACAQAVFYPRMICPHCGADRLDWITPSGKGTIYSTTVVRRKAEHGGDYNVALVDLEEGVRMMSRVDGIAPGAVAIGMAVQAHV 114          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A261RI23_9BORD (DNA-binding protein n=3 Tax=Bordetella TaxID=517 RepID=A0A261RI23_9BORD)

HSP 1 Score: 154 bits (390), Expect = 2.160e-46
Identity = 71/112 (63.39%), Postives = 88/112 (78.57%), Query Frame = 1
Query:    4 SQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339
            S +A P GPE+ Y+D+LA+G F+IQ+C AC + VFYPR+VCPHCG+D+L W   SG GTVYSTTVVRR+PE GGDY+V L+DL EG R+MSRV  I P AV IGM V+A +A
Sbjct:    4 SMSAPPAGPEKHYRDQLAKGQFQIQRCQACARAVFYPRMVCPHCGSDQLAWATPSGKGTVYSTTVVRRRPEQGGDYNVALIDLEEGVRLMSRVQGIAPDAVSIGMAVQADVA 115          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A2T6J6A8_9BURK (Uncharacterized protein n=1 Tax=Acidovorax sp. 107 TaxID=2135638 RepID=A0A2T6J6A8_9BURK)

HSP 1 Score: 153 bits (386), Expect = 9.920e-46
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            PGP+  +   LA+G FEIQ CSACG+HVFYPR +CPHCG+ +L WV  SGAG VYS+T VRRKPE+GGDY+V LVDLAEGPR+MSR+  + P  V+IGM+V+AR+
Sbjct:   12 PGPDALFAQALARGRFEIQHCSACGQHVFYPRALCPHCGSAQLDWVEPSGAGQVYSSTTVRRKPESGGDYNVALVDLAEGPRLMSRIDGVPPEQVRIGMRVRARV 116          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI0011A481C0 (Zn-ribbon domain-containing OB-fold protein n=1 Tax=Extensimonas perlucida TaxID=2590786 RepID=UPI0011A481C0)

HSP 1 Score: 152 bits (383), Expect = 2.750e-45
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            PGP+  +   LAQG FEIQ+C+ACG+HVFYPR +C HCG+ +L WV  SGAG VYS+TVVRRKPEAGGDY+V L+DLAEGPR+MSRV  I P  V+IGM V+A++
Sbjct:    9 PGPDARFAAALAQGRFEIQRCAACGEHVFYPRALCTHCGSAQLDWVQPSGAGVVYSSTVVRRKPEAGGDYNVALIDLAEGPRLMSRVDGIAPAQVRIGMPVQAQV 113          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A556URW1_9BURK (DNA-binding protein n=4 Tax=Cupriavidus TaxID=106589 RepID=A0A556URW1_9BURK)

HSP 1 Score: 151 bits (382), Expect = 4.290e-45
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339
            PGP++ Y + LA G F IQ C  C +HVFYPR +CPHCG D L W A +G GTVYST+VVRRKP+AGGDY+VVLVDL EG RMMSRV  I P  V+IGM+VKAR+A
Sbjct:   11 PGPDKQYAEALAAGQFRIQLCQDCHRHVFYPRNICPHCGGDALAWTAPAGTGTVYSTSVVRRKPDAGGDYNVVLVDLDEGVRMMSRVEGIAPADVRIGMRVKARVA 116          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A9IGQ7_BORPD (Uncharacterized protein n=2 Tax=Bordetella petrii TaxID=94624 RepID=A9IGQ7_BORPD)

HSP 1 Score: 151 bits (381), Expect = 5.050e-45
Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   10 AAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            AA P GPE+ Y D+LAQG F+IQ C AC + VFYPRV+CPHCG+ +L W+  SG GTVYSTTVVRRKPE GGDY+V L+DL EG RMMSRV  I P AV IGM V+A +
Sbjct:    6 AAPPAGPEKHYHDQLAQGRFQIQCCQACSQAVFYPRVICPHCGSGQLDWITPSGKGTVYSTTVVRRKPEHGGDYNVALIDLEEGVRMMSRVEGIAPEAVTIGMAVQASV 114          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A261QYJ6_9BORD (DNA-binding protein n=2 Tax=Bordetella TaxID=517 RepID=A0A261QYJ6_9BORD)

HSP 1 Score: 150 bits (380), Expect = 6.340e-45
Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    4 SQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            +Q+ +  GP++ + D+LAQG F IQ C+AC +HVFYPR++CPHCG  +L WVA SG GT+YSTTV+RR+PE GGDY V LVDL EG RMMSRV  + P AVKIGM+V+A I
Sbjct:    4 TQSTEAIGPDRYFHDRLAQGRFLIQHCAACSRHVFYPRMLCPHCGGSQLDWVAPSGRGTIYSTTVIRRRPEQGGDYHVALVDLEEGVRMMSRVEGVAPAAVKIGMQVQAAI 114          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: UPI001E49DA56 (OB-fold domain-containing protein n=1 Tax=Bordetella petrii TaxID=94624 RepID=UPI001E49DA56)

HSP 1 Score: 150 bits (380), Expect = 7.180e-45
Identity = 75/114 (65.79%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    1 MSQ--AAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            MSQ  AA P GPE+ Y+D+L+QG F+IQ+C AC + VFYPRV+CPHCGA  L W   SG GTVYSTTVVRRK E GGDY+V LVDL EG RMMSRV ++ P AV IGM V+A I
Sbjct:    1 MSQPTAAPPVGPEKHYQDQLSQGLFQIQRCQACSQAVFYPRVICPHCGAGDLAWFTPSGKGTVYSTTVVRRKAEHGGDYNVALVDLEEGVRMMSRVDDVAPAAVAIGMAVQASI 114          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A157S4H7_9BORD (Predicted nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Bordetella ansorpii TaxID=288768 RepID=A0A157S4H7_9BORD)

HSP 1 Score: 150 bits (380), Expect = 7.880e-45
Identity = 72/110 (65.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    7 QAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARI 336
            Q +QP GPE+ Y D L+QG F+IQ+C AC + VFYPR +CPHCG  +L W   SG GTVYSTTVVRR+ E GGDY+V LVDLAEGPRMMSRV  I P AVKIGM V+ R+
Sbjct:    9 QGSQPAGPEKHYHDLLSQGRFQIQRCHACKQAVFYPRAICPHCGDPRLDWFTPSGKGTVYSTTVVRRRAEHGGDYNVALVDLAEGPRMMSRVDGIAPEAVKIGMAVQVRL 118          
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Match: A0A1F4C9B5_9PROT (DNA-binding protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13b TaxID=1797496 RepID=A0A1F4C9B5_9PROT)

HSP 1 Score: 150 bits (379), Expect = 9.000e-45
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   22 PGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKLGWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPGAVKIGMKVKARIA 339
            PGPE TY++ LA G F IQ+C  C KHVFYPRV+CP CG+ KL W+  SG GTVYSTTV+RRK E+GGDY+V LV+L EGPR+MSRV  + P  VKIGM V ARIA
Sbjct:    3 PGPELTYQNYLAAGEFRIQRCDQCAKHVFYPRVLCPACGSSKLSWIRPSGTGTVYSTTVMRRKAESGGDYNVCLVELNEGPRLMSRVEGVPPQEVKIGMAVNARIA 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12507.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C459CF61.850e-4766.07OB-fold domain-containing protein n=1 Tax=Bordetel... [more]
A0A261RI23_9BORD2.160e-4663.39DNA-binding protein n=3 Tax=Bordetella TaxID=517 R... [more]
A0A2T6J6A8_9BURK9.920e-4664.76Uncharacterized protein n=1 Tax=Acidovorax sp. 107... [more]
UPI0011A481C02.750e-4565.71Zn-ribbon domain-containing OB-fold protein n=1 Ta... [more]
A0A556URW1_9BURK4.290e-4566.04DNA-binding protein n=4 Tax=Cupriavidus TaxID=1065... [more]
A9IGQ7_BORPD5.050e-4566.06Uncharacterized protein n=2 Tax=Bordetella petrii ... [more]
A0A261QYJ6_9BORD6.340e-4562.16DNA-binding protein n=2 Tax=Bordetella TaxID=517 R... [more]
UPI001E49DA567.180e-4565.79OB-fold domain-containing protein n=1 Tax=Bordetel... [more]
A0A157S4H7_9BORD7.880e-4565.45Predicted nucleic-acid-binding protein containing ... [more]
A0A1F4C9B5_9PROT9.000e-4566.04DNA-binding protein n=1 Tax=Betaproteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12507contigP-wetherbeei_contig12507:1379..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog94624.Bpet1638
PFAMsDUF35_N,OB_aCoA_assoc
Model size339
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07068
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.29e-46
EggNOG OGsCOG1545@1|root,COG1545@2|Bacteria,1N2C8@1224|Proteobacteria,2VR2X@28216|Betaproteobacteria,3T7MK@506|Alcaligenaceae
Descriptionnucleic-acid-binding protein containing a Zn-ribbon
Cds size339
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185951.1741579-CDS-P-wetherbeei_contig12507:1378..17171683185951.1741579-CDS-P-wetherbeei_contig12507:1378..1717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12507 1379..1717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12507.2.1prot_P-wetherbeei_contig12507.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12507 1379..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12507.2.1

>prot_P-wetherbeei_contig12507.2.1 ID=prot_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MSQAAQPPGPEQTYKDKLAQGSFEIQKCSACGKHVFYPRVVCPHCGADKL
GWVAASGAGTVYSTTVVRRKPEAGGDYSVVLVDLAEGPRMMSRVVEIEPG
AVKIGMKVKARIA
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mRNA from alignment at P-wetherbeei_contig12507:1379..1717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12507.2.1 ID=mRNA_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12507:1379..1717+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACAAGCCGCACAGCCCCCCGGTCCAGAACAGACCTACAAGGACAA GCTCGCGCAGGGCTCGTTCGAAATCCAGAAGTGCTCCGCCTGCGGCAAGC ACGTGTTCTATCCCCGCGTCGTCTGCCCGCACTGCGGCGCGGACAAGCTC GGCTGGGTGGCAGCCAGCGGCGCCGGCACGGTGTATTCGACGACCGTCGT GCGCCGCAAACCCGAGGCCGGCGGCGACTACAGCGTGGTGCTCGTCGACC TCGCCGAAGGCCCGCGCATGATGAGCCGCGTGGTCGAAATCGAACCCGGC GCGGTGAAGATCGGCATGAAGGTGAAGGCGCGTATCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12507:1379..1717+

>mRNA_P-wetherbeei_contig12507.2.1 ID=mRNA_P-wetherbeei_contig12507.2.1|Name=mRNA_P-wetherbeei_contig12507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig12507:1379..1717+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCACAAGCCGCACAGCCCCCCGGTCCAGAACAGACCTACAAGGACAA
GCTCGCGCAGGGCTCGTTCGAAATCCAGAAGTGCTCCGCCTGCGGCAAGC
ACGTGTTCTATCCCCGCGTCGTCTGCCCGCACTGCGGCGCGGACAAGCTC
GGCTGGGTGGCAGCCAGCGGCGCCGGCACGGTGTATTCGACGACCGTCGT
GCGCCGCAAACCCGAGGCCGGCGGCGACTACAGCGTGGTGCTCGTCGACC
TCGCCGAAGGCCCGCGCATGATGAGCCGCGTGGTCGAAATCGAACCCGGC
GCGGTGAAGATCGGCATGAAGGTGAAGGCGCGTATCGCG
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