mRNA_P-wetherbeei_contig125.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig125.1.3
Unique NamemRNA_P-wetherbeei_contig125.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig125.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig125contigP-wetherbeei_contig125:243..3338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2158
Hectar predicted targeting categorymitochondrion
Exons6
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_006220.1
Cds size1350
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig125.1.3prot_P-wetherbeei_contig125.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig125 837..3124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.4618752-UTR-P-wetherbeei_contig125:242..8361683185950.4618752-UTR-P-wetherbeei_contig125:242..836Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig125 243..836 -
1683185950.5262847-UTR-P-wetherbeei_contig125:3124..33381683185950.5262847-UTR-P-wetherbeei_contig125:3124..3338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig125 3125..3338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.472784-CDS-P-wetherbeei_contig125:836..10811683185950.472784-CDS-P-wetherbeei_contig125:836..1081Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 837..1081 -
1683185950.4826536-CDS-P-wetherbeei_contig125:1310..19771683185950.4826536-CDS-P-wetherbeei_contig125:1310..1977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 1311..1977 -
1683185950.4912584-CDS-P-wetherbeei_contig125:2242..23951683185950.4912584-CDS-P-wetherbeei_contig125:2242..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 2243..2395 -
1683185950.4999034-CDS-P-wetherbeei_contig125:2614..26951683185950.4999034-CDS-P-wetherbeei_contig125:2614..2695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 2615..2695 -
1683185950.5084894-CDS-P-wetherbeei_contig125:2805..28621683185950.5084894-CDS-P-wetherbeei_contig125:2805..2862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 2806..2862 -
1683185950.5171568-CDS-P-wetherbeei_contig125:2977..31241683185950.5171568-CDS-P-wetherbeei_contig125:2977..3124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 2978..3124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig125.1.3

>prot_P-wetherbeei_contig125.1.3 ID=prot_P-wetherbeei_contig125.1.3|Name=mRNA_P-wetherbeei_contig125.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=450bp
MASRLPRRADLKTFLSFRTGSFDNHRTDIASLPRRTMPPFYTIRINQGND
FRNVKTGSRKLSPVCQLKMNSQQYRTTVRKDTAGRLIWQEDAVFEAQDDT
NPILEVEVFDACEPDDAKWVSLGKAALSADPKRKERLVVLFGKTRRGENE
RAGTVTLGITYSLTKPATSNLAPAADPVSPTGSAASLNGSTKSLFASNGS
PGTVAPAATATMPTTPTSNIVDPIPSLKSSNGDASGAAARDGAAAAAAAP
AAEPVTLPEASAVLQTTAEGEAIAEPVKAAINKAAAAMAAAKTAVVSKAG
GHSWYSFAVIACTLALLALLQGLKSSSAGGNGGGGAGGRPAAEPVVLLPG
GLSIGKAKASSTHFLLLDGTGNIILGEGAEPTAEAQRLWESGTAGKRCRA
PLCRAAVTREGAIVLKRGFKTVASISLAEVEELSRYVTIAAAPGDGQKA*
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mRNA from alignment at P-wetherbeei_contig125:243..3338-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig125.1.3 ID=mRNA_P-wetherbeei_contig125.1.3|Name=mRNA_P-wetherbeei_contig125.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3096bp|location=Sequence derived from alignment at P-wetherbeei_contig125:243..3338- (Phaeothamnion wetherbeei SAG_119_79)
GGCACAAATTTTTGCGGAAGGCCGCCAAGCACACCACGGAGGAGAAGGAC
ACAAAGAGGACGTGGAGGTAAGAATGTGCAAGTAGGAGCTTGTTACAGCA
GGAAAAGTCGTCATTTAGCCCCGTTTTGGCGCGGAGAACAATCTGAAAAA
GGCAACGGCAAGTTTTCGCTTCCAGGTTTCACCGAAGCCTTAGGAGACGA
ACAGGCACTGCCGCATGGCTTCGAGACTACCGCGACGTGCTGATCTCAAA
ACCTTTCTTTCTTTTCGGACAGGTTCTTTTGACAATCACCGAACCGATAT
CGCTTCCCTTCCGCGAAGGACCATGCCGCCATTCTACACGATCCGAATCA
ATCAGGGAAACGTAAGAGCTTTCTGGATGCATCGTCATTGCGTTGTATGG
GCGTATGCACCTATAGCGTGGCTTCGATCGAAATTCAACCGTAACTCTTC
TTTCCCATCACAACATCTTCTCACAGGACTTCCGAAACGTGAAAACTGGT
TCACGGAAGCTGTCTCCAGTGTGCCAGCTCAAGGTAAGCTAACCGTCACC
TTATCGCAGTTGCGGCGCTTCTCGCTTTGACACAAGTTCGACTCACATCA
CCCGCCCGCGTCCGACAACTGCGAACCCTCCCATACAAACCAGATGAACA
GCCAACAGTACAGAACCACGGTCCGTAAGGATACGGCCGGCCGGCTGATC
TGGCAGGAAGACGCGGTGTTTGAGGTGAGGATGTGACATGCCGAGTTGTT
GCTGCCTCTCGTCGGTGCACGCCTGCCTCTCAAGCAGCCTTTGAAAAGGC
CACACCGACCGGCGGCCCGAGGAATCTCATTCACCGCGGCAGCGCCAGCT
CGTCCGTCTGCTGTTGTCTTAGCCGATCTTGCGGTCCTTCCTTCTCTCTG
AAGTTGCTTCTCGCCTTTCTTGCACCGGCGGTGACATTCGCAGGCGCAGG
ACGATACGAACCCGATTTTGGAAGTGGAAGTGTTTGACGCGTGCGAGCCG
GATGACGCAAAGTGGGTTTCTCTGGGCAAGGCTGCGCTGAGCGCCGACCC
GAAGCGCAAGGAGCGCCTCGTCGTCCTCTTTGGAAAGACGCGCCGGGTGC
GTCAAGTCGTGGCGTTCTCGCTGGTTTTCGGTGGTTCGCTGCCGCTGCAT
TCGTGCTCTTTCTTTTGGCGCCGCCGGCCGTTCGTCAATGTCTGTCCTTT
CTCGTTTATTGCATTTGGAGAAGCACAGGGAACACTCGCCTGCCGCTGCA
TTTCGTCTTGGCCGGTGTCTAGTTACGGGTGTGAGCGGGACGATGTTCGC
TTCTTTACCTTCCGCCTTACGCTTTGCAGCTCGCTGGAATGCCGCCTCTT
TCCGGGCGCAGGGCGAGAACGAGCGCGCCGGCACGGTCACCCTCGGCATT
ACGTACAGCCTCACGAAGCCGGCAACGTCGAACCTGGCCCCGGCGGCCGA
CCCCGTGTCTCCGACCGGCAGCGCCGCCAGCCTGAACGGCTCCACCAAGT
CCCTCTTCGCGTCCAACGGCTCCCCCGGGACTGTCGCCCCTGCTGCCACC
GCCACAATGCCCACGACCCCCACCTCCAATATCGTCGATCCGATCCCGTC
GCTCAAGAGCAGCAACGGGGACGCCAGCGGCGCCGCCGCCAGGGACGGCG
CGGCGGCTGCGGCGGCGGCGCCGGCAGCTGAGCCTGTGACACTGCCGGAG
GCGTCGGCGGTGCTGCAGACGACGGCGGAGGGAGAGGCGATAGCGGAGCC
CGTCAAGGCAGCGATAAACAAGGCGGCGGCGGCGATGGCGGCGGCTAAGA
CGGCGGTCGTGTCCAAGGCAGGCGGCCACTCGTGGTACTCCTTCGCGGTC
ATCGCGTGCACGCTGGCTCTTCTGGCGTTGCTGCAGGGGCTCAAGTCGAG
CTCGGCGGGCGGTAACGGCGGCGGCGGTGCGGGCGGCCGGCCGGCGGCGG
AGCCCGTCGTGCTTTTGCCGGGCGGGCTGTCCATCGGCAAGGCCAAGGCC
TCCTCGACCCACTTTTTGCTGCTGGACGGTGCGTTTCGGTATTTGCTCTT
ATCGCTTGCGTGCTATTAGAGTTGTGTTGAATGACTGCTGTCGTCTTGTC
CTTGAATCGAGAGTAGATTGCATGTTCTGTTGTGCTGGCTCGTTCGAATG
GTTGATGAGAACTTTAGCGTCGGCATGAGCTGCAGCGAGCGATTGATTGT
TCTCACTTCTTGTTGCCTTTCCCTGTGCTGGCGACGCATCCTGTTGCAAT
CCTGCAGGCACGGGCAACATCATCCTCGGTGAGGGCGCAGAGCCGACGGC
GGAGGCGCAGCGACTGTGGGAGAGCGGCACGGCGGGAAAGCGATGCCGGG
CGCCGCTCTGCCGTGCCGCCGTCACCAGGGAGGGCGCCATCGTGCTCAAG
CGGGGGTTCAAGACGGTGGCTTCAATCTCCCTGGCGGAGGTGGAGGAGCT
TTCCCGTTACGTCACCATCGCCGCCGCTCCGGGAGACGGCCAGAAGGCCT
GAGGTGGGTTTTGTGGACGGGGTTGGGCGCCGCCCGCCTGCGGCCGCCGC
TATCGAGGGGAATAACAGGAAGCGGCGGCAACGGAAAGCAGCGCGACTCC
GGGTATATGCGCGTATTAAGTGAGGCAGTGCTTGGCTCGGCCGGTCGGCC
GCGGCGGTGCGTGTCGGCGACGGTGTCCATCGGAGGGATCAACCAGGTAC
CCGCAGCAGCTGTGGGTGGCACGGTGTCACCGCGGGGGATGGAGGGCACG
GGAGGGAAGATAAGGATTCCTGGGGGATATTGGTGTTAGGGGCAGTCGTT
GGCAGGGGCCATGGGGAAAGGGGCGACCTGGGGGATGCCGGCTGGAAGGC
CTCCGACTGTATTGAGAGAGAGAGTGTGAGGCCAGAGAGGAAGTTGGAGG
GTTGAATTTTGCAGCCGGCGCGGCGGCGGTGTCATGGGGCGAAGCGGCGG
AAGAGGAGACAAGACGCTTTGCATTTGAGGTCCTTAGAGGCAAAACCTAA
TAGGGAGGCAACTTGCACAAGCAAGGAAGGGAGACGATCTTCGAGTGCTT
TCCTTCAAAAGTTCGATATTCTGCCGCTTCAAAAGTTCGATATTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig125:243..3338-

>mRNA_P-wetherbeei_contig125.1.3 ID=mRNA_P-wetherbeei_contig125.1.3|Name=mRNA_P-wetherbeei_contig125.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1350bp|location=Sequence derived from alignment at P-wetherbeei_contig125:243..3338- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTTCGAGACTACCGCGACGTGCTGATCTCAAAACCTTTCTTTCTTT
TCGGACAGGTTCTTTTGACAATCACCGAACCGATATCGCTTCCCTTCCGC
GAAGGACCATGCCGCCATTCTACACGATCCGAATCAATCAGGGAAACGAC
TTCCGAAACGTGAAAACTGGTTCACGGAAGCTGTCTCCAGTGTGCCAGCT
CAAGATGAACAGCCAACAGTACAGAACCACGGTCCGTAAGGATACGGCCG
GCCGGCTGATCTGGCAGGAAGACGCGGTGTTTGAGGCGCAGGACGATACG
AACCCGATTTTGGAAGTGGAAGTGTTTGACGCGTGCGAGCCGGATGACGC
AAAGTGGGTTTCTCTGGGCAAGGCTGCGCTGAGCGCCGACCCGAAGCGCA
AGGAGCGCCTCGTCGTCCTCTTTGGAAAGACGCGCCGGGGCGAGAACGAG
CGCGCCGGCACGGTCACCCTCGGCATTACGTACAGCCTCACGAAGCCGGC
AACGTCGAACCTGGCCCCGGCGGCCGACCCCGTGTCTCCGACCGGCAGCG
CCGCCAGCCTGAACGGCTCCACCAAGTCCCTCTTCGCGTCCAACGGCTCC
CCCGGGACTGTCGCCCCTGCTGCCACCGCCACAATGCCCACGACCCCCAC
CTCCAATATCGTCGATCCGATCCCGTCGCTCAAGAGCAGCAACGGGGACG
CCAGCGGCGCCGCCGCCAGGGACGGCGCGGCGGCTGCGGCGGCGGCGCCG
GCAGCTGAGCCTGTGACACTGCCGGAGGCGTCGGCGGTGCTGCAGACGAC
GGCGGAGGGAGAGGCGATAGCGGAGCCCGTCAAGGCAGCGATAAACAAGG
CGGCGGCGGCGATGGCGGCGGCTAAGACGGCGGTCGTGTCCAAGGCAGGC
GGCCACTCGTGGTACTCCTTCGCGGTCATCGCGTGCACGCTGGCTCTTCT
GGCGTTGCTGCAGGGGCTCAAGTCGAGCTCGGCGGGCGGTAACGGCGGCG
GCGGTGCGGGCGGCCGGCCGGCGGCGGAGCCCGTCGTGCTTTTGCCGGGC
GGGCTGTCCATCGGCAAGGCCAAGGCCTCCTCGACCCACTTTTTGCTGCT
GGACGGCACGGGCAACATCATCCTCGGTGAGGGCGCAGAGCCGACGGCGG
AGGCGCAGCGACTGTGGGAGAGCGGCACGGCGGGAAAGCGATGCCGGGCG
CCGCTCTGCCGTGCCGCCGTCACCAGGGAGGGCGCCATCGTGCTCAAGCG
GGGGTTCAAGACGGTGGCTTCAATCTCCCTGGCGGAGGTGGAGGAGCTTT
CCCGTTACGTCACCATCGCCGCCGCTCCGGGAGACGGCCAGAAGGCCTGA
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