mRNA_P-wetherbeei_contig12485.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12485.2.1
Unique NamemRNA_P-wetherbeei_contig12485.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12485.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12485contigP-wetherbeei_contig12485:946..1681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size736
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.1978843-UTR-P-wetherbeei_contig12485:945..12231683185950.1978843-UTR-P-wetherbeei_contig12485:945..1223Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12485 946..1223 +
1683185950.2129424-UTR-P-wetherbeei_contig12485:1628..16811683185950.2129424-UTR-P-wetherbeei_contig12485:1628..1681Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12485 1629..1681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.2056158-CDS-P-wetherbeei_contig12485:1223..16281683185950.2056158-CDS-P-wetherbeei_contig12485:1223..1628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12485 1224..1628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12485.2.1prot_P-wetherbeei_contig12485.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12485 1224..1628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12485.2.1

>prot_P-wetherbeei_contig12485.2.1 ID=prot_P-wetherbeei_contig12485.2.1|Name=mRNA_P-wetherbeei_contig12485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MGLLCRDTAGCNGSLAALVTLPAASGQILQCQQQDGGRRRVAGATEAWID
EALACGCCCSGHVLFRQVTARRYLFGALRQRAAQVLFAAHPPGAFAGLGC
KGNVMYAVAVAGVAGGAAAVAGNLRKSDRHRSWK*
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mRNA from alignment at P-wetherbeei_contig12485:946..1681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12485.2.1 ID=mRNA_P-wetherbeei_contig12485.2.1|Name=mRNA_P-wetherbeei_contig12485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=736bp|location=Sequence derived from alignment at P-wetherbeei_contig12485:946..1681+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGTGCTACCGCCACCTCTGGCGAAGCATGGGGAAGTAGCGCCTTT
CGCGCATTGCAGCTGTGTTGTTCAACTGCTTTGACATGTCGCGACAACCT
TAAGGAAGGACTGCATTGTCACCCTGCAGCGCAACGGGGCTCGGTGCAAT
TACCAGCCGGGTTCGACCTCCCGCCTTTCCACTGCTCGGAGCGCTCCGGC
GGCTGCACCGCTGCCAGCGCTTTGCTTTTCCTCAGAAGACATGCTGGTAA
CGTCATCAAAGCGGGCGCAACGGGGCAGATGGGGCTGCTATGCCGCGACA
CCGCCGGATGCAACGGTTCTCTGGCTGCGCTTGTCACTCTTCCTGCGGCA
TCTGGTCAGATCCTGCAATGCCAGCAGCAAGACGGGGGCCGGCGACGCGT
TGCTGGTGCTACGGAAGCCTGGATCGACGAGGCTTTAGCCTGTGGCTGCT
GCTGCAGCGGACATGTCCTCTTCCGGCAGGTGACGGCGAGGCGCTATCTC
TTTGGAGCGCTCCGTCAGAGGGCGGCGCAGGTGCTCTTTGCCGCTCACCC
GCCAGGCGCTTTCGCGGGGCTGGGCTGCAAAGGAAATGTTATGTATGCTG
TTGCGGTGGCGGGGGTTGCGGGAGGTGCAGCGGCAGTGGCGGGCAACCTC
CGCAAAAGCGATCGCCATCGTAGTTGGAAGTAAGTAAGAGGCGCATTCCA
CTCCCTTCTCGAACTTATTTTAATCTTTGCTCTCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12485:946..1681+

>mRNA_P-wetherbeei_contig12485.2.1 ID=mRNA_P-wetherbeei_contig12485.2.1|Name=mRNA_P-wetherbeei_contig12485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig12485:946..1681+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCTGCTATGCCGCGACACCGCCGGATGCAACGGTTCTCTGGCTGC
GCTTGTCACTCTTCCTGCGGCATCTGGTCAGATCCTGCAATGCCAGCAGC
AAGACGGGGGCCGGCGACGCGTTGCTGGTGCTACGGAAGCCTGGATCGAC
GAGGCTTTAGCCTGTGGCTGCTGCTGCAGCGGACATGTCCTCTTCCGGCA
GGTGACGGCGAGGCGCTATCTCTTTGGAGCGCTCCGTCAGAGGGCGGCGC
AGGTGCTCTTTGCCGCTCACCCGCCAGGCGCTTTCGCGGGGCTGGGCTGC
AAAGGAAATGTTATGTATGCTGTTGCGGTGGCGGGGGTTGCGGGAGGTGC
AGCGGCAGTGGCGGGCAACCTCCGCAAAAGCGATCGCCATCGTAGTTGGA
AGTAA
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