mRNA_P-wetherbeei_contig12474.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12474.1.1
Unique NamemRNA_P-wetherbeei_contig12474.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12474contigP-wetherbeei_contig12474:1305..1853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo134934
Model size333
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.2e-13
EggNOG OGs28Q2J@1|root,2QWR9@2759|Eukaryota,3Q76T@4776|Peronosporales
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-10_001000.1
Descriptionprotein import into nucleus
Cds size333
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.9216852-CDS-P-wetherbeei_contig12474:1304..14391683185949.9216852-CDS-P-wetherbeei_contig12474:1304..1439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12474 1305..1439 +
1683185949.93019-CDS-P-wetherbeei_contig12474:1655..18531683185949.93019-CDS-P-wetherbeei_contig12474:1655..1853Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12474 1656..1853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12474.1.1prot_P-wetherbeei_contig12474.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12474 1305..1853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12474.1.1

>prot_P-wetherbeei_contig12474.1.1 ID=prot_P-wetherbeei_contig12474.1.1|Name=mRNA_P-wetherbeei_contig12474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
VLACDPFEETALGSREFLASVAAAGDSAVARATFRIVPVTDPKLQEPRGC
GGGSGLAGATVRYGEAFLLACDAGLRLDDRLGLLRPPLFLCSAAKSETRA
TAISGRQVSW*
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mRNA from alignment at P-wetherbeei_contig12474:1305..1853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12474.1.1 ID=mRNA_P-wetherbeei_contig12474.1.1|Name=mRNA_P-wetherbeei_contig12474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig12474:1305..1853+ (Phaeothamnion wetherbeei SAG_119_79)
GTACTGGCCTGCGACCCGTTCGAAGAAACGGCGCTCGGCTCGCGCGAGTT
TCTGGCGTCGGTCGCCGCCGCCGGTGACAGTGCTGTCGCGCGGGCGACCT
TCCGGATCGTGCCTGTGACGGACCCGAAGCTCCAGGTAGGGTGATGTTGC
CGGAAACGGTCGGAGAAAAGGTTGCTAGGTTGGATGCGGACTATCGTTTC
CTCGCCTTCTCTCGGCAGCCCGTCGTTTTCCGGGGGCCATTGTCAATTGA
CGGCCTTGCCCCATTCCCCCTCCACCGCCACTTTTCCTCTGCTCGAACCC
TTTTCCCGCCTCTTCTGTGTGGCGATACGCCGACAAAAACGGCAATGATA
GGAGCCTCGCGGCTGCGGCGGCGGAAGCGGGCTGGCCGGTGCGACGGTGC
GATACGGCGAAGCCTTTCTGCTGGCGTGTGACGCCGGACTCCGGTTGGAC
GACCGGCTCGGCCTGCTGCGGCCGCCACTGTTCCTGTGCTCCGCCGCCAA
GTCGGAGACGCGCGCCACGGCCATCTCTGGCCGCCAGGTGAGTTGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12474:1305..1853+

>mRNA_P-wetherbeei_contig12474.1.1 ID=mRNA_P-wetherbeei_contig12474.1.1|Name=mRNA_P-wetherbeei_contig12474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig12474:1305..1853+ (Phaeothamnion wetherbeei SAG_119_79)
GTACTGGCCTGCGACCCGTTCGAAGAAACGGCGCTCGGCTCGCGCGAGTT
TCTGGCGTCGGTCGCCGCCGCCGGTGACAGTGCTGTCGCGCGGGCGACCT
TCCGGATCGTGCCTGTGACGGACCCGAAGCTCCAGGAGCCTCGCGGCTGC
GGCGGCGGAAGCGGGCTGGCCGGTGCGACGGTGCGATACGGCGAAGCCTT
TCTGCTGGCGTGTGACGCCGGACTCCGGTTGGACGACCGGCTCGGCCTGC
TGCGGCCGCCACTGTTCCTGTGCTCCGCCGCCAAGTCGGAGACGCGCGCC
ACGGCCATCTCTGGCCGCCAGGTGAGTTGGTGA
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