mRNA_P-wetherbeei_contig1246.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1246.2.1
Unique NamemRNA_P-wetherbeei_contig1246.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.610e-41
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1
Query:    1 MAVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            +AVREIRRLG+YGLT GE+ RFSSALLTDAQQLAAQGDRISNS+QLTFLMESVAS HTFMD  QTYEATRLV+ESL+L EVNEVAAE+CEHIT
Sbjct:  376 VAVREIRRLGMYGLTVGELTRFSSALLTDAQQLAAQGDRISNSEQLTFLMESVASDHTFMDAQQTYEATRLVVESLTLGEVNEVAAEICEHIT 468          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.860e-40
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            AVRE+RRLG++GLT GE+ RFSSALLTDA+QLAAQG+RISNS+QL FLM++VASGHTFMDT QTY ATRLVIESL+LEE+NEVAAELCEHIT
Sbjct:  638 AVREVRRLGMFGLTSGELKRFSSALLTDARQLAAQGNRISNSEQLNFLMDTVASGHTFMDTEQTYHATRLVIESLTLEELNEVAAELCEHIT 729          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: K0SCE6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SCE6_THAOC)

HSP 1 Score: 116 bits (290), Expect = 4.160e-31
Identity = 56/92 (60.87%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            +V EIR+LG++G+T GE++R++SALLTDA+QLAAQGD IS+ DQL +LME+VA+GHTFM + Q+Y  T   + +L+LEEVN  A+ELC HIT
Sbjct:   15 SVAEIRKLGVHGVTPGEMERYASALLTDAEQLAAQGDMISHGDQLAYLMETVANGHTFMSSEQSYAITEAALSTLTLEEVNSAASELCAHIT 106          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A7S2VA48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA48_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.410e-29
Identity = 57/92 (61.96%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            ++ EIR+LGLYG+T GE++R++S+L+TDA+QLAAQGDRIS+ DQL++LME+VA+GHTFM   Q+Y  T   + SL+LEEVN+ AAELC H+T
Sbjct:  247 SLAEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISHGDQLSYLMETVANGHTFMSPMQSYHMTAKALSSLTLEEVNKAAAELCAHVT 338          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A7S0V9L2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9L2_9CRYP)

HSP 1 Score: 110 bits (276), Expect = 1.590e-29
Identity = 56/92 (60.87%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 MAVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHI 276
            +AV+E +R+  +GLTQ E+ R  SALL+D++QLAAQGDR++N DQL +LME+VA  HTFMD  QT++AT+LV   L++EEVNEVAAE+C HI
Sbjct:    7 VAVKEFKRMTEHGLTQMELQRCLSALLSDSEQLAAQGDRMTNQDQLQYLMENVACDHTFMDALQTHQATQLVTAGLTVEEVNEVAAEVCRHI 98          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A1Z5KE45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE45_FISSO)

HSP 1 Score: 119 bits (299), Expect = 1.950e-29
Identity = 56/92 (60.87%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            +V EIR+LGLYG+T GE++R++S+L+TDA+QLAAQGDRISN DQL++LME+VA+GHTFM   Q+Y+ T   + ++++E+VN  AAELC HIT
Sbjct:  509 SVSEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISNGDQLSYLMETVANGHTFMSPMQSYQMTARALSTMTVEQVNAAAAELCSHIT 600          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: A0A7S2EV96_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV96_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.640e-29
Identity = 57/92 (61.96%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            ++ EIR+LG+YG+T GE++R++SAL+TDA+QLAAQGDRIS+ DQL +LME+VA+GHTFM   Q+Y  T   + SL+LEEVNE A ELC H+T
Sbjct:  268 SLSEIRKLGIYGVTPGEMERYASALMTDAEQLAAQGDRISHGDQLAYLMETVANGHTFMSPEQSYYMTAKALSSLTLEEVNEAAKELCSHVT 359          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: B5Y4R1_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y4R1_PHATC)

HSP 1 Score: 118 bits (296), Expect = 4.940e-29
Identity = 55/92 (59.78%), Postives = 78/92 (84.78%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            +V EIR+LGLYG+T GE++R++S+L+TDA+QLAAQGDRIS+ DQL++LME+VA+GHTFM   Q+Y  T   + +++LE+VNE AAELC H++
Sbjct:  362 SVSEIRKLGLYGVTPGEMERYASSLMTDAEQLAAQGDRISHGDQLSYLMETVANGHTFMSPMQSYHMTAKALSTMTLEDVNEAAAELCSHVS 453          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: B8CCG1_THAPS (Stromal processing peptidase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG1_THAPS)

HSP 1 Score: 117 bits (294), Expect = 9.190e-29
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1
Query:    4 AVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHI 276
            ++ EIR+LGLYG+T GE++R++SALLTDA+QLAAQGD IS+ DQL +LME+VA+GHTFM   Q+Y  T   + +L+LEEVN+ AAELC HI
Sbjct:  365 SISEIRKLGLYGVTPGEMERYASALLTDAEQLAAQGDMISHGDQLAYLMETVANGHTFMSPEQSYAITERALSTLTLEEVNKAAAELCSHI 455          
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.210e-28
Identity = 56/93 (60.22%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 MAVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLMESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT 279
            +AVREIRRLG+YGL++ E++R+ +A+L D+ Q AAQG+RISNSDQL  LMES+A GH FM+  Q  +A  LV++S+++EEVNEVAAE+C+H+T
Sbjct:  552 LAVREIRRLGMYGLSESELNRYITAMLRDSTQHAAQGERISNSDQLNQLMESIACGHVFMEPTQQCDAVELVLKSITVEEVNEVAAEICQHLT 644          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1246.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C760_9STRA2.610e-4186.02Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A6H5JCY0_9PHAE5.860e-4082.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0SCE6_THAOC4.160e-3160.87Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2VA48_9STRA1.410e-2961.96Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S0V9L2_9CRYP1.590e-2960.87Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Z5KE45_FISSO1.950e-2960.87Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2EV96_9STRA2.640e-2961.96Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B5Y4R1_PHATC4.940e-2959.78Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B8CCG1_THAPS9.190e-2962.64Stromal processing peptidase (Fragment) n=1 Tax=Th... [more]
W7U2D5_9STRA3.210e-2860.22Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1246contigP-wetherbeei_contig1246:6488..7575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr10319
PFAMsPeptidase_M16,Peptidase_M16_C
Model size279
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.09e-30
EggNOG OGsCOG1025@1|root,KOG0959@2759|Eukaryota,2XB2M@2836|Bacillariophyta
Descriptionmetalloendopeptidase activity
Cds size279
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.536711-CDS-P-wetherbeei_contig1246:6487..65171683185949.536711-CDS-P-wetherbeei_contig1246:6487..6517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1246 6488..6517 -
1683185949.5446932-CDS-P-wetherbeei_contig1246:6781..68381683185949.5446932-CDS-P-wetherbeei_contig1246:6781..6838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1246 6782..6838 -
1683185949.5519335-CDS-P-wetherbeei_contig1246:7120..72581683185949.5519335-CDS-P-wetherbeei_contig1246:7120..7258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1246 7121..7258 -
1683185949.5590117-CDS-P-wetherbeei_contig1246:7521..75751683185949.5590117-CDS-P-wetherbeei_contig1246:7521..7575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1246 7522..7575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1246.2.1prot_P-wetherbeei_contig1246.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1246 6488..7575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1246.2.1

>prot_P-wetherbeei_contig1246.2.1 ID=prot_P-wetherbeei_contig1246.2.1|Name=mRNA_P-wetherbeei_contig1246.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MAVREIRRLGLYGLTQGEVDRFSSALLTDAQQLAAQGDRISNSDQLTFLM
ESVASGHTFMDTAQTYEATRLVIESLSLEEVNEVAAELCEHIT
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mRNA from alignment at P-wetherbeei_contig1246:6488..7575-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1246.2.1 ID=mRNA_P-wetherbeei_contig1246.2.1|Name=mRNA_P-wetherbeei_contig1246.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1088bp|location=Sequence derived from alignment at P-wetherbeei_contig1246:6488..7575- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTCCGCGAGATCCGCCGCCTCGGACTCTATGGCTTGACCCAGGG AGAGGTGAGCGAGGAGAGCGGTGGTGTGAAGCGGCGGGCGAAGTTCCTTT GGCCGTTCGACTGCAATGCGTGGTGTCTGTTCCTCCTCTTGACGTGTGAA ACGGAGTTCTGCCATTCTCTTGCGGCTTCCGCTTTCGGACATCCCCGTCT TGAGCTTGGTGGTGGCCAGTTTCTGGCGGCCTAATAATGACGATAATGAT CTTCTTATGGTTCTATCTCTTCTATCGTTTTCTTCCCCCTTCGTCTTGCA CGATAAAATGAGGAAAGGTGGACCGGTTCAGCTCGGCCCTTTTGACGGAT GCGCAGCAGCTGGCGGCGCAGGGCGACCGCATTAGCAACAGCGACCAGCT CACCTTCCTCATGGAGAGCGTTGCCTCGGGCCACACCTTCATGGATACCG CGCAGGTGCGGTAGCTAAACAAACGGTTCCGACGCCAATCTCGGTCTTGT GTCCCGATCCTAAGATTGCCATTCAGTCCAGTCGGAAGACCCGACGGCGG CTTTTCGCGCTTTGCCGCGCAGCTGGCCTCCGTCATCTTGTCTGTCACGT CAGGCTCTTTTTGGGGTTTGCCTGCTTCGTCAGGCCTGTTTTCTGTTCTG GTGTTGCCACGCAGCCTGCCTCCTGTTGTTTCTAACGTGAGGGACTGTTC GACTCATTTGTCAGTCTCCACTTTCTCCGATCTGCAGACGTACGAGGCCA CTCGGCTCGTGATTGAGTCGCTCAGCCTCGAGGAAGTTAACGAAGTGCGT GGATAGGAATCCTCTCTTTCCTGTGTATTAATTTAATGAAGAAGGCTCGC AGTTTCTCGGACACCGCGGAGCATGCAAGCTCCCCTGTCGCTGAATCGCG GAAGAGCAAGCTTGTCTCCTGACGGCGGCGGCTAGGACGGGGGCGGCCGG TGGGCCAAAACGAGCTCTGAAAGAAGCTTGAAGGCAGGAAGCGCCATAAT TCCTTCTGACTCGTCTTGCACTCCTTTGCTTCCTTCTGGTATCTCTTCCT GCGGGCAGGTGGCGGCGGAGTTGTGCGAGCACATCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1246:6488..7575-

>mRNA_P-wetherbeei_contig1246.2.1 ID=mRNA_P-wetherbeei_contig1246.2.1|Name=mRNA_P-wetherbeei_contig1246.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1246:6488..7575- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTCCGCGAGATCCGCCGCCTCGGACTCTATGGCTTGACCCAGGG
AGAGGTGGACCGGTTCAGCTCGGCCCTTTTGACGGATGCGCAGCAGCTGG
CGGCGCAGGGCGACCGCATTAGCAACAGCGACCAGCTCACCTTCCTCATG
GAGAGCGTTGCCTCGGGCCACACCTTCATGGATACCGCGCAGACGTACGA
GGCCACTCGGCTCGTGATTGAGTCGCTCAGCCTCGAGGAAGTTAACGAAG
TGGCGGCGGAGTTGTGCGAGCACATCACG
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