mRNA_P-wetherbeei_contig1245.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1245.3.1
Unique NamemRNA_P-wetherbeei_contig1245.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1245.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1245contigP-wetherbeei_contig1245:4831..7433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2603
Hectar predicted targeting categoryother localisation
Exons1
Cds size1488
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.4254856-UTR-P-wetherbeei_contig1245:4830..55491683185949.4254856-UTR-P-wetherbeei_contig1245:4830..5549Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1245 4831..5549 -
1683185949.4405117-UTR-P-wetherbeei_contig1245:7037..74331683185949.4405117-UTR-P-wetherbeei_contig1245:7037..7433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1245 7038..7433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.433251-CDS-P-wetherbeei_contig1245:5549..70371683185949.433251-CDS-P-wetherbeei_contig1245:5549..7037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 5550..7037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1245.3.1prot_P-wetherbeei_contig1245.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1245 5550..7037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1245.3.1

>prot_P-wetherbeei_contig1245.3.1 ID=prot_P-wetherbeei_contig1245.3.1|Name=mRNA_P-wetherbeei_contig1245.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=496bp
MGWPEAWKAGTADFDGGSNGAGAGVNGGLQDGPGAPKPWGSHARSEYGPA
GDATLRSNGGPVNGGPPAWGSVHFESSGGYGRSGYGGSGGTRTVDRDDLG
GSGCSGFEGGSGSGGRGGIGDAGVGLSTGGGDRSGGGIRDGGDAALGRSE
RPDAWAPLAPGEYGVASLPSSDDVAIGKGAAAPVDYFDQTDQRWDDGAGI
SISPGLQYSDSYERRGGGGSGGVGGGDSDGCGNGLGVSSEDQRSGGFLDR
HSAVSSEWRDDGSTFRSSLTAVGAAQLGRDVGKSPFYDAEPNWPPHLSSQ
QQHGEQQQQQQQQHHHREQLPPPPPPPPPQQRQQLYDDYYYQEEQYQHDS
QQRGIFQEQPQQQQQQQPQQSRYGSAVAPMRSESPRLYPGVDDVPPSASP
PPNSYRYSPGPGYPSAGPLPGRGGYGGGYGGGGGGRTFHQSPSSRGPPMG
RGWGGRRGGIGGWRGRGPPPRAPYFSQYPAQYPAQYPAQYPAQRW*
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mRNA from alignment at P-wetherbeei_contig1245:4831..7433-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1245.3.1 ID=mRNA_P-wetherbeei_contig1245.3.1|Name=mRNA_P-wetherbeei_contig1245.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2603bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:4831..7433- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGGCGGCGGGCGGCGAGGGGCGTCTGGGTTCGCCATGGCGAACGAC
TGTGGCAGTGGGAGTGCACGGAGATGGCGGCAGGCGCCTTGAAAACGAAC
GCATTCCTGAGCGAATCGAGCCTGCTAGATCGGGCCCCAGCGGCAGCGAC
AGCGGCGCCGGCAACAGCGGCGGCGGCGGGAGCGGCGGCAACGGCAACGG
TGGCGGCAATGGCGGTGTCGGCAGCATTGGTGGCAGCAGCGGCCTTGGCG
TTGGTGGCGGCGAGGGCGGCGAGGGCGGCGAGGGCATATCCAACGTCTTT
GAGGGACCGAAGGCCTGGACATCGCTCGCTAGACGCGATTTCAACCAGCC
AGGCGCCGCCACGCCCTCGCCCTGCAGCAGCACCGCCGGTGACAGGATGG
GTTGGCCGGAAGCATGGAAAGCTGGGACCGCGGATTTCGACGGCGGCAGC
AACGGCGCTGGCGCTGGCGTCAATGGCGGACTGCAGGATGGTCCCGGGGC
GCCCAAGCCGTGGGGCTCGCATGCCCGAAGCGAATACGGGCCCGCCGGTG
ACGCGACGCTGCGGAGCAACGGGGGGCCCGTGAACGGCGGGCCTCCGGCA
TGGGGAAGCGTGCATTTTGAGAGCAGCGGCGGCTATGGCAGAAGCGGCTA
CGGCGGCAGCGGTGGAACCCGCACTGTGGATCGCGATGACCTCGGTGGCA
GCGGTTGCAGCGGCTTTGAAGGCGGCAGCGGCAGTGGCGGCCGCGGTGGC
ATCGGCGATGCCGGCGTCGGCTTGAGCACCGGCGGCGGCGACCGCAGCGG
CGGCGGGATCAGGGATGGCGGTGACGCCGCTCTGGGGCGGTCTGAGAGAC
CGGACGCCTGGGCGCCGCTTGCGCCAGGTGAGTACGGTGTCGCCAGCCTG
CCTTCCTCCGATGATGTCGCAATTGGCAAAGGGGCCGCAGCACCTGTCGA
CTACTTTGATCAGACGGATCAGCGGTGGGACGACGGCGCCGGCATCTCCA
TCTCCCCCGGCCTGCAGTATTCTGACAGCTATGAACGCCGCGGTGGCGGT
GGCAGCGGCGGTGTCGGTGGTGGCGACAGTGATGGTTGCGGCAATGGCCT
GGGCGTTTCCTCCGAGGACCAGCGCTCGGGTGGCTTTTTGGACCGTCACT
CCGCGGTCTCCTCCGAGTGGAGAGACGATGGCTCGACGTTCCGCTCGTCG
CTGACCGCCGTCGGTGCGGCGCAGCTCGGCCGAGACGTCGGAAAGTCGCC
GTTCTACGATGCGGAGCCGAACTGGCCGCCGCATCTGTCATCGCAGCAGC
AGCACGGGGAGCAGCAGCAGCAGCAGCAGCAGCAACATCATCATCGGGAG
CAGCTGCCGCCGCCACCGCCCCCGCCCCCGCCGCAGCAGCGGCAGCAGCT
TTATGATGATTACTACTACCAAGAAGAGCAGTACCAGCACGACTCGCAGC
AGCGCGGCATCTTTCAGGAGCAGCCACAGCAGCAGCAGCAGCAACAGCCA
CAGCAGTCACGGTACGGTTCGGCGGTGGCGCCGATGCGGAGCGAGTCGCC
GCGGCTGTACCCGGGCGTGGATGACGTGCCGCCGTCCGCATCGCCGCCGC
CGAATTCGTACCGCTACAGCCCGGGGCCGGGGTACCCGTCGGCGGGCCCG
CTGCCGGGCCGCGGTGGCTATGGCGGCGGTTACGGCGGTGGCGGCGGGGG
GCGGACCTTCCACCAGTCGCCGTCATCGCGCGGCCCACCGATGGGGCGGG
GCTGGGGCGGGCGGCGCGGCGGCATCGGCGGGTGGCGCGGGCGGGGGCCG
CCCCCTCGCGCGCCATACTTCAGCCAGTACCCGGCGCAGTACCCTGCTCA
GTACCCGGCTCAGTACCCGGCACAAAGGTGGTGAAAGGTGCAGCTTTTTG
GAGGCGGTCGCCACCTAAACGGCGCCGGAACGACAATATATCCGCTGCTG
CCGCGGCGAAATTGGGGGCATCAACGGCCATGGCGCCAGCAGCAAAGCTA
GCATCACTAACGGTGGCGGTGGTTGCGGCGGCAGCAGTGGGGACAACGAC
GGTGACGTCGAGTAGGAGCGGCGGTGGCTTCGGCGGTGGCATCGGCGGCG
GCACAGCCACTGAGCCAGGCCGATGGCCGGTTTGGGGAGAGGCGGAGTTG
AGTGGGTGGGGGCAGCGGCGGCATCGTGAGAGTAAGGCAGGGAGGTTAAA
ACCGTTTCGAGAGGGAAGACGTGATTGGGAGCGGGAAAAGCAATTTCGAG
AGGTGTAGCCCTGCGGGGGCCCGGCAGCAAGGAGCAGCTGGGAGAACGAA
GAGGGGCGGTAGCTGAAGCAAGCGGCGGTGACGCTCTCCATGCCAACATA
CGCGGCGCGGGGCGGCGCATGCGCGCGACGAAGACTCGATCAAGACTGCA
CGGAAGCGGGACCGGCGCGGGAGGGGGAGCCGCAGCGCGGCAGAACGCCA
GGCTTGGGACGGGCATTTGAGATGTGGGAAAGGACGGTTTGTAATGGGAG
ATGGGCAGTCAGGGCAGGCAGCGAGAGCGGGGCGGGGGAGCGACGGAAGG
GAAGGACCGAGAAAGGGGAGGAACAGCGGCGGGAATACGACCATTAAACG
GGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1245:4831..7433-

>mRNA_P-wetherbeei_contig1245.3.1 ID=mRNA_P-wetherbeei_contig1245.3.1|Name=mRNA_P-wetherbeei_contig1245.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1488bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:4831..7433- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTTGGCCGGAAGCATGGAAAGCTGGGACCGCGGATTTCGACGGCGG
CAGCAACGGCGCTGGCGCTGGCGTCAATGGCGGACTGCAGGATGGTCCCG
GGGCGCCCAAGCCGTGGGGCTCGCATGCCCGAAGCGAATACGGGCCCGCC
GGTGACGCGACGCTGCGGAGCAACGGGGGGCCCGTGAACGGCGGGCCTCC
GGCATGGGGAAGCGTGCATTTTGAGAGCAGCGGCGGCTATGGCAGAAGCG
GCTACGGCGGCAGCGGTGGAACCCGCACTGTGGATCGCGATGACCTCGGT
GGCAGCGGTTGCAGCGGCTTTGAAGGCGGCAGCGGCAGTGGCGGCCGCGG
TGGCATCGGCGATGCCGGCGTCGGCTTGAGCACCGGCGGCGGCGACCGCA
GCGGCGGCGGGATCAGGGATGGCGGTGACGCCGCTCTGGGGCGGTCTGAG
AGACCGGACGCCTGGGCGCCGCTTGCGCCAGGTGAGTACGGTGTCGCCAG
CCTGCCTTCCTCCGATGATGTCGCAATTGGCAAAGGGGCCGCAGCACCTG
TCGACTACTTTGATCAGACGGATCAGCGGTGGGACGACGGCGCCGGCATC
TCCATCTCCCCCGGCCTGCAGTATTCTGACAGCTATGAACGCCGCGGTGG
CGGTGGCAGCGGCGGTGTCGGTGGTGGCGACAGTGATGGTTGCGGCAATG
GCCTGGGCGTTTCCTCCGAGGACCAGCGCTCGGGTGGCTTTTTGGACCGT
CACTCCGCGGTCTCCTCCGAGTGGAGAGACGATGGCTCGACGTTCCGCTC
GTCGCTGACCGCCGTCGGTGCGGCGCAGCTCGGCCGAGACGTCGGAAAGT
CGCCGTTCTACGATGCGGAGCCGAACTGGCCGCCGCATCTGTCATCGCAG
CAGCAGCACGGGGAGCAGCAGCAGCAGCAGCAGCAGCAACATCATCATCG
GGAGCAGCTGCCGCCGCCACCGCCCCCGCCCCCGCCGCAGCAGCGGCAGC
AGCTTTATGATGATTACTACTACCAAGAAGAGCAGTACCAGCACGACTCG
CAGCAGCGCGGCATCTTTCAGGAGCAGCCACAGCAGCAGCAGCAGCAACA
GCCACAGCAGTCACGGTACGGTTCGGCGGTGGCGCCGATGCGGAGCGAGT
CGCCGCGGCTGTACCCGGGCGTGGATGACGTGCCGCCGTCCGCATCGCCG
CCGCCGAATTCGTACCGCTACAGCCCGGGGCCGGGGTACCCGTCGGCGGG
CCCGCTGCCGGGCCGCGGTGGCTATGGCGGCGGTTACGGCGGTGGCGGCG
GGGGGCGGACCTTCCACCAGTCGCCGTCATCGCGCGGCCCACCGATGGGG
CGGGGCTGGGGCGGGCGGCGCGGCGGCATCGGCGGGTGGCGCGGGCGGGG
GCCGCCCCCTCGCGCGCCATACTTCAGCCAGTACCCGGCGCAGTACCCTG
CTCAGTACCCGGCTCAGTACCCGGCACAAAGGTGGTGA
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