mRNA_P-wetherbeei_contig1245.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1245.2.1
Unique NamemRNA_P-wetherbeei_contig1245.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1245.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1245contigP-wetherbeei_contig1245:2103..4869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2767
Hectar predicted targeting categoryother localisation
Exons1
Cds size1500
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.3881438-UTR-P-wetherbeei_contig1245:2102..26171683185949.3881438-UTR-P-wetherbeei_contig1245:2102..2617Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1245 2103..2617 +
1683185949.4034352-UTR-P-wetherbeei_contig1245:4117..48691683185949.4034352-UTR-P-wetherbeei_contig1245:4117..4869Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1245 4118..4869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.3961794-CDS-P-wetherbeei_contig1245:2617..41171683185949.3961794-CDS-P-wetherbeei_contig1245:2617..4117Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 2618..4117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1245.2.1prot_P-wetherbeei_contig1245.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1245 2618..4117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1245.2.1

>prot_P-wetherbeei_contig1245.2.1 ID=prot_P-wetherbeei_contig1245.2.1|Name=mRNA_P-wetherbeei_contig1245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=500bp
MSADSPDGGRRRRLTSQHEGRMLADMASRLALFDAVKAAANLEDRRHLTS
QRGASPLTNVNARLALFDRVKAAALDERRRLTAGDASAAALADAEAAAIH
SEDDADESLEESVDAHVAVFGRVKAAADALSSRLAVFESVKAAAAAVSDR
LAIFDRVKAAAATNLHYDPSYHPSAWWSADDGDGESNTAAGPRRFSFALG
GKRGAAVAASVSSDSREPFVPEKAAMMAAAAAGGESDGSSSGSGDSAASA
DGIAPVEDFLQFEVEMAEEAFFQELSAEAPAYQTDSFDTSSSTQDAGVFR
LAAQAEAAMFDGAMATAVAAPPQWPLRPPSPAAHAYASVSSADENADEGL
SASPMADWSQSRTSSAGYSSSDADTGATAEDEWEARQSAQQWVRLPRSAP
LSEAALVVGKWSDLLPSAKATDAVIGRRGATTPAVAAVPGDGDGFMEDSG
VRFEVLAAAAALVAGVPMSSSSRSSFGSRDAFSSDVPTQTLDEFVAAAR*
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mRNA from alignment at P-wetherbeei_contig1245:2103..4869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1245.2.1 ID=mRNA_P-wetherbeei_contig1245.2.1|Name=mRNA_P-wetherbeei_contig1245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2767bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:2103..4869+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTGCTGCTGGCCGCCGCGGCCCTCCACGCGGCGCGCCGGTTGCTGGCC
GCCCGCGGCGATAATGTCGCCGCCATCGCTAAGTCTGCCACCGAGGTGTG
CTCTTCCGTCACAGGCGCCGCCGCGATTTGCGCCGCCAGCGCAGCAGACG
CGGTCATTCTGGGCTTCCCGCTGACGCTGCCCGTGTGGGCGGCGCACCTG
GTGGTGGTAGTGGCGGGGCTCGGAGCTGGCAGCGTCTCCGTCGCGGTCGA
AGGCGAACGTCGCCCGGCCCTCGCGGCCCTCTCCAAATGCGTTGCGGACT
TGGAGGGCGGCGGCGCGGCGCTCAGCGAGCGGTGCGTCAAGGCGCTGGCC
GCGTCGGACAACGCGCCGGCGACAGCGTTGGCTACGACGCTGGGTGCGCC
CGCGCGCCGCCGCGCGCGCACCCTGGCGGCGGTCGGGTTCATCGCGGTGA
CGGCGGCGCTGGGCAGCGGCACCATTCCCCGGCCCCGCACGCCCAGCGCG
TCAGCACCGGCGACGATGAGTGCGGACAGCCCGGACGGAGGACGGCGGCG
GCGGCTGACGTCGCAACACGAGGGCCGCATGCTCGCCGACATGGCATCCC
GCCTCGCGCTCTTCGACGCGGTCAAGGCCGCCGCCAACCTGGAGGACCGG
CGACACCTGACGTCGCAGCGGGGTGCCTCGCCGCTCACCAACGTAAACGC
CCGGCTCGCACTCTTTGACCGCGTCAAGGCCGCCGCCCTGGACGAGCGGC
GGCGCCTGACCGCGGGAGATGCCAGCGCAGCCGCACTCGCTGACGCCGAG
GCGGCCGCCATCCATTCGGAGGATGACGCCGACGAATCGCTGGAGGAATC
TGTAGACGCGCACGTCGCCGTGTTCGGCCGGGTAAAGGCCGCCGCGGACG
CCCTCAGCAGCCGGCTGGCCGTGTTCGAGTCAGTGAAGGCCGCCGCCGCC
GCCGTGAGCGACCGCCTCGCCATCTTTGACCGCGTCAAGGCCGCCGCCGC
CACCAACCTACACTACGACCCCAGCTACCACCCGTCGGCGTGGTGGTCGG
CGGACGACGGCGACGGGGAGTCCAATACGGCAGCGGGCCCTCGTCGTTTC
TCGTTCGCACTCGGCGGCAAGCGAGGCGCCGCTGTCGCCGCCTCCGTTTC
TTCCGACTCCCGGGAGCCCTTTGTGCCAGAGAAGGCGGCGATGATGGCGG
CGGCGGCCGCAGGCGGCGAGAGCGATGGCAGCAGCAGCGGTAGCGGCGAT
TCCGCCGCGTCGGCGGATGGCATTGCGCCTGTGGAGGACTTTTTGCAGTT
TGAAGTGGAGATGGCGGAGGAGGCCTTCTTCCAGGAGCTCTCCGCGGAAG
CTCCGGCCTATCAGACGGACTCGTTCGACACCAGCAGCAGCACGCAGGAC
GCTGGCGTCTTCCGGCTGGCGGCGCAGGCGGAGGCGGCAATGTTCGACGG
GGCAATGGCGACGGCAGTCGCCGCACCGCCGCAATGGCCGCTGCGCCCGC
CGTCGCCGGCGGCGCACGCGTACGCCTCCGTCTCTTCGGCCGATGAGAAC
GCGGACGAGGGCTTGTCGGCATCGCCGATGGCGGACTGGAGCCAGAGCCG
GACATCATCGGCTGGCTACTCGTCGTCTGACGCCGACACAGGCGCCACCG
CCGAGGACGAATGGGAAGCCCGCCAGTCGGCGCAACAGTGGGTGCGGTTG
CCGCGATCGGCGCCGCTGTCGGAGGCGGCGCTTGTGGTGGGCAAGTGGAG
CGACCTCTTGCCATCAGCAAAGGCAACCGACGCTGTCATCGGACGCCGCG
GCGCCACCACCCCCGCCGTCGCCGCCGTGCCCGGCGACGGCGATGGTTTC
ATGGAAGACTCCGGCGTTCGCTTCGAGGTGCTGGCGGCGGCGGCGGCGCT
GGTGGCCGGCGTGCCGATGTCGTCGTCGTCAAGATCGTCCTTCGGCAGCC
GCGACGCCTTTTCGTCCGACGTGCCGACGCAGACCCTCGACGAGTTTGTG
GCGGCCGCGCGGTGAGAGGTTGGCGTTGCGGCGACGTCGGCGTCGGCGCT
ATGAGAGGCGGCTGCGGAGGGTTTTCTGGGGAGAAGAAAAGGCGACCGTT
GTACATATGCCCAGGGTGAGGTAGTGAGGTGTCTTTGCGGCAGGCAGAGA
AGGGAATGAGGGAGAGAGGGGCTATGCTGGCAACAGTTTTTCCCGTTGTG
GGCCGGTTAAGGGGCAGAAGGCCTTCCCCGACGGCCGTTGGTAGGAGCAG
TGAGTCAGTTGATTTCCCATATGGTGCGTGGGCTTTTCATCCATCCCATC
TAGAAATCCTTCCCTTTTAAAAGGCAGCCAGTGCGCAGAGCCCAACTTTT
GGGAAGGTGATGCTGGCGTAACGCCCAATGCGTGACCAGTGGCAGTGCCA
TCTCTCAACGCTTTCAAATAGTAGTATTCTCTTTTGGGCATAGTGGCGAT
AGCGACGAGAGAGCAAAAATACTCAGCCCTCCTGCAGTAGCCCGTCTGGA
TAATGCGAGTGAGCTCCAAAGTCGTTTCGGTGCGGTGCCGATGCCCACGC
TCATTTCTTTTTCTCCTCCCGCAACCGCATTTCTCTGTTCCTCTCCACCG
TTTTCTCTCCCCCGCTACTCTGGTCCAAGCCGGCGGCAGCCGAACGCCGG
CCGCCATCAAACCAAAAGCAGCCGGCCGCTTCCCACCCCGTCCAGTGCGG
AATTCCCTCCCCGCCCTAGCCCGCCCGCCCCCGTTTAATGGTCGTATTCC
CGCCGCTGTTCCTCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1245:2103..4869+

>mRNA_P-wetherbeei_contig1245.2.1 ID=mRNA_P-wetherbeei_contig1245.2.1|Name=mRNA_P-wetherbeei_contig1245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1500bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:2103..4869+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGCGGACAGCCCGGACGGAGGACGGCGGCGGCGGCTGACGTCGCA
ACACGAGGGCCGCATGCTCGCCGACATGGCATCCCGCCTCGCGCTCTTCG
ACGCGGTCAAGGCCGCCGCCAACCTGGAGGACCGGCGACACCTGACGTCG
CAGCGGGGTGCCTCGCCGCTCACCAACGTAAACGCCCGGCTCGCACTCTT
TGACCGCGTCAAGGCCGCCGCCCTGGACGAGCGGCGGCGCCTGACCGCGG
GAGATGCCAGCGCAGCCGCACTCGCTGACGCCGAGGCGGCCGCCATCCAT
TCGGAGGATGACGCCGACGAATCGCTGGAGGAATCTGTAGACGCGCACGT
CGCCGTGTTCGGCCGGGTAAAGGCCGCCGCGGACGCCCTCAGCAGCCGGC
TGGCCGTGTTCGAGTCAGTGAAGGCCGCCGCCGCCGCCGTGAGCGACCGC
CTCGCCATCTTTGACCGCGTCAAGGCCGCCGCCGCCACCAACCTACACTA
CGACCCCAGCTACCACCCGTCGGCGTGGTGGTCGGCGGACGACGGCGACG
GGGAGTCCAATACGGCAGCGGGCCCTCGTCGTTTCTCGTTCGCACTCGGC
GGCAAGCGAGGCGCCGCTGTCGCCGCCTCCGTTTCTTCCGACTCCCGGGA
GCCCTTTGTGCCAGAGAAGGCGGCGATGATGGCGGCGGCGGCCGCAGGCG
GCGAGAGCGATGGCAGCAGCAGCGGTAGCGGCGATTCCGCCGCGTCGGCG
GATGGCATTGCGCCTGTGGAGGACTTTTTGCAGTTTGAAGTGGAGATGGC
GGAGGAGGCCTTCTTCCAGGAGCTCTCCGCGGAAGCTCCGGCCTATCAGA
CGGACTCGTTCGACACCAGCAGCAGCACGCAGGACGCTGGCGTCTTCCGG
CTGGCGGCGCAGGCGGAGGCGGCAATGTTCGACGGGGCAATGGCGACGGC
AGTCGCCGCACCGCCGCAATGGCCGCTGCGCCCGCCGTCGCCGGCGGCGC
ACGCGTACGCCTCCGTCTCTTCGGCCGATGAGAACGCGGACGAGGGCTTG
TCGGCATCGCCGATGGCGGACTGGAGCCAGAGCCGGACATCATCGGCTGG
CTACTCGTCGTCTGACGCCGACACAGGCGCCACCGCCGAGGACGAATGGG
AAGCCCGCCAGTCGGCGCAACAGTGGGTGCGGTTGCCGCGATCGGCGCCG
CTGTCGGAGGCGGCGCTTGTGGTGGGCAAGTGGAGCGACCTCTTGCCATC
AGCAAAGGCAACCGACGCTGTCATCGGACGCCGCGGCGCCACCACCCCCG
CCGTCGCCGCCGTGCCCGGCGACGGCGATGGTTTCATGGAAGACTCCGGC
GTTCGCTTCGAGGTGCTGGCGGCGGCGGCGGCGCTGGTGGCCGGCGTGCC
GATGTCGTCGTCGTCAAGATCGTCCTTCGGCAGCCGCGACGCCTTTTCGT
CCGACGTGCCGACGCAGACCCTCGACGAGTTTGTGGCGGCCGCGCGGTGA
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