mRNA_P-wetherbeei_contig1245.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1245.1.1
Unique NamemRNA_P-wetherbeei_contig1245.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1245.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1245contigP-wetherbeei_contig1245:311..1978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons4
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.3346899-UTR-P-wetherbeei_contig1245:310..5111683185949.3346899-UTR-P-wetherbeei_contig1245:310..511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1245 311..511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.3450162-CDS-P-wetherbeei_contig1245:511..6531683185949.3450162-CDS-P-wetherbeei_contig1245:511..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 512..653 +
1683185949.3521678-CDS-P-wetherbeei_contig1245:973..11701683185949.3521678-CDS-P-wetherbeei_contig1245:973..1170Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 974..1170 +
1683185949.3590744-CDS-P-wetherbeei_contig1245:1465..15611683185949.3590744-CDS-P-wetherbeei_contig1245:1465..1561Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 1466..1561 +
1683185949.3660626-CDS-P-wetherbeei_contig1245:1765..19781683185949.3660626-CDS-P-wetherbeei_contig1245:1765..1978Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1245 1766..1978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1245.1.1prot_P-wetherbeei_contig1245.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1245 512..1978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1245.1.1

>prot_P-wetherbeei_contig1245.1.1 ID=prot_P-wetherbeei_contig1245.1.1|Name=mRNA_P-wetherbeei_contig1245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
MPTERNKNANKILTMQPEALDGERWLQWPALLALGLGESVVVRLASQDAA
FSPTSLAVASELATLAVSLALAVRPTGKRDAVAAPAAGFIEASLRSLATL
GLCLVPAALLCAQTLMGAHALATVRCSTIVAAALTIPLFSRLFDEAIRFT
RHGFRGTAAALFPVAGACMPLLALGALPAGAETGEGPFLAVGAAACAALA
AAFAHRFVRPRFAGGA
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mRNA from alignment at P-wetherbeei_contig1245:311..1978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1245.1.1 ID=mRNA_P-wetherbeei_contig1245.1.1|Name=mRNA_P-wetherbeei_contig1245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1668bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:311..1978+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAGATTTGCCAAATAGTACCCCGCACTTTTTGTGACGTGCCGGTGGCT
TTTACCCCGTCCAAGGTCCCTGAGGGAAGTATGGAGGTGCGCCGCGTGCC
CCCTTGAAGCTTGGTGTGGGAAGAGGAAACCCTTCCAGCAACCCATCAAA
GGTTTTCGGATTTTGGCGCTGGCCTTCTTCGGCAGGTCAAGTATCTTTTG
AATGCCCACGGAGAGAAACAAGAACGCAAACAAGATCTTGACCATGCAAC
CCGAGGCGCTTGATGGCGAACGCTGGTTGCAGTGGCCTGCCCTTCTTGCA
CTTGGGCTGGGTGAGAGCGTTGTCGTGCGGTTGGCATCGCAAGGTGAGGT
CAGACTCAAGGAATAAGTGTAATGATGTTGCTGCGATGGACAGGTCAATG
TCGACCGGCAGCACTTTCTGCTGCCTGCAAGTTGAACTGTCGCAAAAAGC
CGGAGGGAACTCGTCTTCGTACACGCGAATCGTTCTGCTGCACAGCGAGC
TGGCCCTTGTTGAACTTTGCCCCCACTTACAAATGCGCGCCTCAAAGTCT
TGTCCGTACTTTGCAAGAGCTTTGTAGCGACTGCTGGAGACATTATGACG
CCACTACTGCGACGCTGCGCTTTTCCTCCGCCTACTCTTTAAAACGCTCC
ACTGGAGACGCAGACGCCGCGTTCTCGCCCACCTCGCTCGCCGTGGCCTC
CGAGCTGGCGACGTTGGCTGTTTCCCTCGCGCTGGCCGTGAGACCGACCG
GCAAGCGTGACGCTGTCGCTGCACCGGCGGCAGGGTTCATTGAGGCTTCG
CTGCGCTCGTTGGCCACCTTGGGGCTGTGCCTTGTCCCCGCTGCCCTCCT
CTGCGCACAGGTGGGGGGCGAAAGGCGTTGTGTCTTTTGGCGTGTTTTCT
ATCTGGCGTGCTGAGCAAGATGGTCTGCACAGTCGCCAGGAAGGGGGAAG
GCAGTTTTGGCGCAGACGTTTGGGTTCTTCTGGTTCAATCACCCAGTTCA
ACGTCATCGGATGCCCTTCTTTGTCACGACGGAAGGGTGTTGCCGCTGTT
GCCGCCGATGCACGTGCTGGCACACCAGCGACGGCCTAACAAAAAAATCG
CGTTTCTCTCCTCCCGTTGCTGCCGCCCCGCGCCCCGGCCCGCTTCGCCC
CGCAGACGCTGATGGGCGCCCACGCCCTCGCCACTGTTCGCTGCTCGACG
ATTGTTGCCGCCGCGCTGACCATTCCTCTTTTCTCCCGCCTTTTTGACGA
GGTAAAAACGATATGAAGCGCCGCGAAAGAAGACCTGTTCTCGCCGTGAC
GGATTTGACTGACCGCCTCTGGTGGCGGCATTTTTTGTTCCGCACGGTTC
GTGATTCCCCCTGCAGGTCTTTCACCGCACGTTTCCCTTTTTTTAAGCTC
ATTTTCACCTTTCTCCCTCCGAAAAAAATGCCGCCCCCCGCCATCGCCCC
ATCAGGCCATCCGCTTCACCCGCCACGGTTTCCGCGGCACCGCCGCTGCT
CTCTTCCCGGTCGCCGGAGCCTGCATGCCTCTCCTGGCCCTCGGGGCCCT
GCCGGCTGGCGCCGAAACAGGCGAAGGCCCATTTCTCGCCGTCGGCGCCG
CCGCGTGCGCAGCACTAGCGGCGGCCTTCGCTCACCGCTTCGTGCGGCCG
CGCTTCGCGGGCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1245:311..1978+

>mRNA_P-wetherbeei_contig1245.1.1 ID=mRNA_P-wetherbeei_contig1245.1.1|Name=mRNA_P-wetherbeei_contig1245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig1245:311..1978+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCACGGAGAGAAACAAGAACGCAAACAAGATCTTGACCATGCAACC
CGAGGCGCTTGATGGCGAACGCTGGTTGCAGTGGCCTGCCCTTCTTGCAC
TTGGGCTGGGTGAGAGCGTTGTCGTGCGGTTGGCATCGCAAGACGCCGCG
TTCTCGCCCACCTCGCTCGCCGTGGCCTCCGAGCTGGCGACGTTGGCTGT
TTCCCTCGCGCTGGCCGTGAGACCGACCGGCAAGCGTGACGCTGTCGCTG
CACCGGCGGCAGGGTTCATTGAGGCTTCGCTGCGCTCGTTGGCCACCTTG
GGGCTGTGCCTTGTCCCCGCTGCCCTCCTCTGCGCACAGACGCTGATGGG
CGCCCACGCCCTCGCCACTGTTCGCTGCTCGACGATTGTTGCCGCCGCGC
TGACCATTCCTCTTTTCTCCCGCCTTTTTGACGAGGCCATCCGCTTCACC
CGCCACGGTTTCCGCGGCACCGCCGCTGCTCTCTTCCCGGTCGCCGGAGC
CTGCATGCCTCTCCTGGCCCTCGGGGCCCTGCCGGCTGGCGCCGAAACAG
GCGAAGGCCCATTTCTCGCCGTCGGCGCCGCCGCGTGCGCAGCACTAGCG
GCGGCCTTCGCTCACCGCTTCGTGCGGCCGCGCTTCGCGGGCGGCGCC
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