mRNA_P-wetherbeei_contig12449.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12449.1.1
Unique NamemRNA_P-wetherbeei_contig12449.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A7C3NPL5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NPL5_9PROT)

HSP 1 Score: 124 bits (312), Expect = 3.400e-27
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKKAGLTDAEIPPALEKLLADGYIKIF---AEAPAA----GDAAEGDDLDLDFTSPAKVALLNTEAEQRSK 324
            MHPQT+YTKT+KGVLE+ NK+++L R+LGLVFL+VDGK  VADL KK+G+   ++  ALEKL+ DGYIK+F   A APAA      AA+    DLDFTSP  +A LN EAE+R+K
Sbjct:    1 MHPQTVYTKTSKGVLEIANKSIKLSRDLGLVFLSVDGKSTVADLMKKSGMPQDKLHEALEKLVTDGYIKVFSTPAAAPAARAVSAAAAQDTGDDLDFTSPTAMAKLNAEAERRAK 115
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A1F4DH77_9PROT (AsmA_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DH77_9PROT)

HSP 1 Score: 103 bits (258), Expect = 3.050e-20
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKK-AGLTDAEIPPALEKLLADGYIKIFAE----APAAGDAA-----EGDDLDLDFTSPAKVALLNTEA 309
            MHP TIYTKT KGVLE++NKT++LPREL  VFL VDGK  V DL KK + L + ++  AL KL  DGYI++F+     AP  G AA     + + ++LDFTSP  VA LN EA
Sbjct:    1 MHPLTIYTKTAKGVLEIRNKTIKLPRELSQVFLLVDGKSTVTDLLKKDSDLEEEKLKEALTKLETDGYIRVFSAPAEAAPVPGRAAAVTAPKEEGVELDFTSPEVVAKLNAEA 113
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A1F4CXB1_9PROT (AsmA_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CXB1_9PROT)

HSP 1 Score: 101 bits (251), Expect = 2.550e-19
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKKA-GLTDAEIPPALEKLLADGYIKIF---AEAPAAGDAA------EGDDLDLDFTSPAKVALLNTEA 309
            MHP T+YTKT KGVLE++NK+ +L R+LG VFL VDGK  V+++ KK  GL +A +  AL KL  DGYI++F   A AP+   AA      EGDDLD  FTSP  VA LN EA
Sbjct:   13 MHPLTVYTKTAKGVLEIRNKSGKLSRDLGRVFLLVDGKSTVSEILKKDNGLEEARLQEALTKLETDGYIRVFSAPAAAPSLSPAAAAAPKEEGDDLD--FTSPDVVARLNAEA 123
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A3N5NEX4_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NEX4_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 3.870e-18
Identity = 62/142 (43.66%), Postives = 77/142 (54.23%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKK-AGLTDAEIPPALEKLLADGYIKIFAEA-------------------------------PAAGDAAEGDDLDLDFTSPAKVALLNTEAEQRSKAE 330
            M  QTIYTKT KGVLE+KN+T+RLPR+L  +F+ VDGK  V DL +K +G+   E+  ALEKL ADG+IKIF+                                 PAA      D  DLDFTSP  +  LN  AE R++AE
Sbjct:    1 MSEQTIYTKTAKGVLEIKNRTIRLPRDLERIFMLVDGKSSVGDLLQKQSGMAYEEMDKALEKLAADGFIKIFSTGGVATVQPPSPRIADPNETVRMMRPPTMRISEPAAVAEKRSDLADLDFTSPESLNKLNQVAEARARAE 142
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A1F4BDV3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BDV3_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-16
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKKAGLTDAEIPPALEKLLADGYIKIFAEAPAAGDAAEG----------DDLDLDFTSPAKVALLNTEAEQRSKAEXXXXXRAETAARAA 372
            +HP+TIY+KT KGVLEVKNKT +L R  G VFL VDGK  VADL KK+G+    +   L KL  DGYI++F+   AA  AA             + D DFT+P  +              XXX  RA TAARAA
Sbjct:    3 IHPKTIYSKTPKGVLEVKNKTAKLDRTGGQVFLAVDGKSTVADLLKKSGVDAKALDETLTKLTTDGYIRVFSSPEAAQPAAPAAXXXXXXXXXTEDDFDFTTPQAMTXXXXXXXXXXXXXXXXKARALTAARAA 136
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BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Match: A0A7X1P094_9PROT (AsmA_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P094_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 2.890e-16
Identity = 61/141 (43.26%), Postives = 76/141 (53.90%), Query Frame = 1 
Query:    1 MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADL-AKKAGLTDAEIPPALEKLLADGYIKIFAEAPAAGDAA------------------------------EGDDLDLDFTSPAKVALLNTEAEQRSKAE 330
            M  QTIYTKT KGVLEVKNKT++LPR+L  VF  VDGK  VA+L ++ AG+   E   AL+KL  +G+IKIFA   +  +AA                                D  DLDFTSP  +  LN  AE R++AE
Sbjct:    1 MGQQTIYTKTAKGVLEVKNKTIKLPRDLERVFSLVDGKSTVAELLSRNAGMAYEEFDQALDKLTHEGFIKIFASGASPANAAAAAAINPNETIRMRPITVRMNESAAAPGERRSDLADLDFTSPESLNKLNQVAEARARAE 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12449.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7C3NPL5_9PROT3.400e-2759.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4DH77_9PROT3.050e-2053.98AsmA_2 domain-containing protein n=1 Tax=Betaprote... [more]
A0A1F4CXB1_9PROT2.550e-1954.87AsmA_2 domain-containing protein n=1 Tax=Betaprote... [more]
A0A3N5NEX4_9PROT3.870e-1843.66Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A1F4BDV3_9PROT1.470e-1646.27Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7X1P094_9PROT2.890e-1643.26AsmA_2 domain-containing protein n=1 Tax=Betaprote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12449contigP-wetherbeei_contig12449:551..1753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1203
Hectar predicted targeting categoryother localisation
Exons1
Cds size1203
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.2991672-CDS-P-wetherbeei_contig12449:550..17531683185949.2991672-CDS-P-wetherbeei_contig12449:550..1753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12449 551..1753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12449.1.1prot_P-wetherbeei_contig12449.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12449 551..1753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12449.1.1

>prot_P-wetherbeei_contig12449.1.1 ID=prot_P-wetherbeei_contig12449.1.1|Name=mRNA_P-wetherbeei_contig12449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=401bp
MHPQTIYTKTTKGVLEVKNKTLRLPRELGLVFLTVDGKVKVADLAKKAGL
TDAEIPPALEKLLADGYIKIFAEAPAAGDAAEGDDLDLDFTSPAKVALLN
TEAEQRSKAEAEAKARAETAARAAAEAKARQEVEARARAAAEANARQESA
AKLKAEEQSRAAAQDSAKAQGEVNAATGDKAKAEAEARMRAAMAAKAAAD
AEAKARAAAEAKANIEAQAKAKAEAAARVEAEARAKAEAEARARAQAEAR
ARVALEAKMRAMEEALKQAEERAKTETEARARAEAEAKARTEVEAKARAE
AEARAKAAEAAIVEAKAMAEAAATAKTEAEARAQAEIAARNAAETRAVGQ
VEEKIKAEAEALARAAETARQEALAKADEAARALAAAETRMKAEAEARAA
A
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mRNA from alignment at P-wetherbeei_contig12449:551..1753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12449.1.1 ID=mRNA_P-wetherbeei_contig12449.1.1|Name=mRNA_P-wetherbeei_contig12449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig12449:551..1753+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCACAAACGATATACACGAAGACCACCAAGGGAGTATTGGAGGT
CAAGAACAAGACGCTCCGCCTGCCGCGCGAGCTCGGGCTGGTGTTCCTTA
CCGTCGACGGCAAGGTCAAGGTCGCGGATCTCGCGAAAAAAGCCGGTCTC
ACGGACGCAGAGATTCCCCCTGCCCTCGAAAAACTGCTCGCCGACGGTTA
CATCAAGATTTTTGCGGAAGCGCCGGCCGCCGGCGATGCCGCGGAAGGCG
ACGACCTCGATCTCGACTTCACTTCGCCCGCGAAGGTCGCGCTGCTCAAT
ACCGAAGCCGAACAGCGCTCCAAAGCGGAGGCCGAAGCCAAGGCACGCGC
GGAAACCGCAGCCCGCGCCGCCGCCGAAGCCAAAGCGCGCCAGGAAGTCG
AAGCCCGCGCGCGCGCCGCCGCCGAAGCCAATGCACGCCAGGAATCTGCC
GCCAAGCTGAAAGCCGAAGAACAGTCGCGCGCAGCTGCGCAGGACAGCGC
CAAGGCGCAAGGCGAGGTCAACGCCGCCACCGGCGACAAGGCCAAGGCCG
AAGCCGAAGCGCGCATGCGCGCCGCCATGGCGGCCAAAGCAGCAGCCGAC
GCCGAAGCCAAAGCGCGGGCCGCGGCGGAAGCGAAAGCCAATATAGAAGC
GCAAGCCAAGGCCAAGGCGGAGGCCGCCGCGCGCGTCGAAGCCGAAGCCC
GCGCGAAGGCGGAAGCAGAAGCCCGCGCCCGCGCGCAGGCGGAAGCACGC
GCGCGCGTCGCCCTCGAAGCCAAGATGCGTGCCATGGAAGAGGCGCTGAA
GCAGGCCGAAGAACGCGCCAAGACCGAAACCGAAGCACGTGCGCGTGCCG
AAGCCGAAGCTAAAGCCCGCACCGAAGTCGAAGCCAAGGCCCGCGCAGAA
GCCGAAGCGCGCGCCAAGGCCGCCGAAGCAGCCATCGTCGAGGCGAAAGC
AATGGCGGAAGCCGCCGCGACCGCCAAAACTGAAGCCGAAGCGCGCGCGC
AAGCTGAAATTGCGGCGCGCAATGCAGCCGAAACGCGCGCCGTCGGGCAA
GTCGAGGAAAAAATAAAAGCCGAAGCCGAGGCGCTTGCACGCGCGGCTGA
AACCGCGCGCCAGGAAGCGCTCGCCAAGGCCGACGAAGCAGCACGCGCGC
TCGCCGCGGCCGAAACGCGCATGAAAGCGGAAGCCGAAGCGCGCGCCGCG
GCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12449:551..1753+

>mRNA_P-wetherbeei_contig12449.1.1 ID=mRNA_P-wetherbeei_contig12449.1.1|Name=mRNA_P-wetherbeei_contig12449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig12449:551..1753+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCACAAACGATATACACGAAGACCACCAAGGGAGTATTGGAGGT
CAAGAACAAGACGCTCCGCCTGCCGCGCGAGCTCGGGCTGGTGTTCCTTA
CCGTCGACGGCAAGGTCAAGGTCGCGGATCTCGCGAAAAAAGCCGGTCTC
ACGGACGCAGAGATTCCCCCTGCCCTCGAAAAACTGCTCGCCGACGGTTA
CATCAAGATTTTTGCGGAAGCGCCGGCCGCCGGCGATGCCGCGGAAGGCG
ACGACCTCGATCTCGACTTCACTTCGCCCGCGAAGGTCGCGCTGCTCAAT
ACCGAAGCCGAACAGCGCTCCAAAGCGGAGGCCGAAGCCAAGGCACGCGC
GGAAACCGCAGCCCGCGCCGCCGCCGAAGCCAAAGCGCGCCAGGAAGTCG
AAGCCCGCGCGCGCGCCGCCGCCGAAGCCAATGCACGCCAGGAATCTGCC
GCCAAGCTGAAAGCCGAAGAACAGTCGCGCGCAGCTGCGCAGGACAGCGC
CAAGGCGCAAGGCGAGGTCAACGCCGCCACCGGCGACAAGGCCAAGGCCG
AAGCCGAAGCGCGCATGCGCGCCGCCATGGCGGCCAAAGCAGCAGCCGAC
GCCGAAGCCAAAGCGCGGGCCGCGGCGGAAGCGAAAGCCAATATAGAAGC
GCAAGCCAAGGCCAAGGCGGAGGCCGCCGCGCGCGTCGAAGCCGAAGCCC
GCGCGAAGGCGGAAGCAGAAGCCCGCGCCCGCGCGCAGGCGGAAGCACGC
GCGCGCGTCGCCCTCGAAGCCAAGATGCGTGCCATGGAAGAGGCGCTGAA
GCAGGCCGAAGAACGCGCCAAGACCGAAACCGAAGCACGTGCGCGTGCCG
AAGCCGAAGCTAAAGCCCGCACCGAAGTCGAAGCCAAGGCCCGCGCAGAA
GCCGAAGCGCGCGCCAAGGCCGCCGAAGCAGCCATCGTCGAGGCGAAAGC
AATGGCGGAAGCCGCCGCGACCGCCAAAACTGAAGCCGAAGCGCGCGCGC
AAGCTGAAATTGCGGCGCGCAATGCAGCCGAAACGCGCGCCGTCGGGCAA
GTCGAGGAAAAAATAAAAGCCGAAGCCGAGGCGCTTGCACGCGCGGCTGA
AACCGCGCGCCAGGAAGCGCTCGCCAAGGCCGACGAAGCAGCACGCGCGC
TCGCCGCGGCCGAAACGCGCATGAAAGCGGAAGCCGAAGCGCGCGCCGCG
GCC
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