mRNA_P-wetherbeei_contig12446.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12446.1.1
Unique NamemRNA_P-wetherbeei_contig12446.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12446.1.1 vs. uniprot
Match: A0A6H5KU01_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU01_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.430e-18
Identity = 72/184 (39.13%), Postives = 92/184 (50.00%), Query Frame = 1 
Query:   16 EKDIRRLRRRAHAATLDAAQRLGGDLEPVARCFCRYDWRRGGAIGPAAFARAAMAAGFAFTRTELASLAACFGDGERVAYSQFLAWATPDDAAAAAALLV----------------PSGAATAYGSGSHGAXXXXXXXXXXXDDEGEEAMLKLRGAISRSALDA-ARLRDAFERLNVSRGGGRG 516
            E+ + +L RRA A  ++AAQR+  D E   R + RYDWRR G +G AAF R+    GF FTR + A LA  FGDG  V+Y  FL+WATP     AA+ +                 P  AA +   G   A            DE EEA LK+R A+ R   D  AR  + FER++   GG RG
Sbjct:  141 ERGVGKLLRRAQATIVEAAQRMDSDFEAFDRPYLRYDWRRTGRVGTAAFVRSTARCGFPFTRAQAAFLAGVFGDGSDVSYPTFLSWATPGPDGLAASGVGGDRRGTGESASRLQRHPGEAALSALEGGRSASRRGGV-----SDEEEEAELKVRTALQRMGEDGVARAWEEFERMDP--GGRRG 317
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BLAST of mRNA_P-wetherbeei_contig12446.1.1 vs. uniprot
Match: A0A7S3NNZ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNZ0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.200e-5
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:    1 AMGSPEKDIRRLRRRAHAATLDAAQRLGGDLEPVARC--FCRYDWRRGGAIGPAAFARAAMAAGFAFTRTELASLAACFGDGE-----RVAYSQFLAWATPDDA 291
            A G P  D + +R RA AA L+AA R+G      A    F  +DWR    +    F  AA+ AG A TR +LA++   F   +     ++AY++FLAWAT  +A
Sbjct:  460 ANGKP--DWKHMRARARAAVLEAADRMGSTAAKTAIDGEFMHFDWRGTSLVHVDEFVVAALRAGIAITRADLATIGRRFAQHDDDPNSKIAYTRFLAWATSSNA 561
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12446.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU01_9PHAE2.430e-1839.13EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3NNZ0_9STRA5.200e-537.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12446contigP-wetherbeei_contig12446:1119..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size689
Hectar predicted targeting categoryother localisation
Exons1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.1903605-CDS-P-wetherbeei_contig12446:1118..18021683185949.1903605-CDS-P-wetherbeei_contig12446:1118..1802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12446 1119..1802 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.1982524-UTR-P-wetherbeei_contig12446:1802..18051683185949.1982524-UTR-P-wetherbeei_contig12446:1802..1805Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12446 1803..1805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12446.1.1prot_P-wetherbeei_contig12446.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12446 1119..1802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12446.1.1

>prot_P-wetherbeei_contig12446.1.1 ID=prot_P-wetherbeei_contig12446.1.1|Name=mRNA_P-wetherbeei_contig12446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MGSPEKDIRRLRRRAHAATLDAAQRLGGDLEPVARCFCRYDWRRGGAIGP
AAFARAAMAAGFAFTRTELASLAACFGDGERVAYSQFLAWATPDDAAAAA
ALLVPSGAATAYGSGSHGAYGGGHSGYGGGDDEGEEAMLKLRGAISRSAL
DAARLRDAFERLNVSRGGGRGSGSRTVPAGDLPDLMHRLGLPATPADVRG
LLRRYGGACGDGGRADAFYYEDLLTDLR
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mRNA from alignment at P-wetherbeei_contig12446:1119..1805-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12446.1.1 ID=mRNA_P-wetherbeei_contig12446.1.1|Name=mRNA_P-wetherbeei_contig12446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig12446:1119..1805- (Phaeothamnion wetherbeei SAG_119_79)
GCGATGGGATCGCCAGAAAAAGACATCCGTCGACTGAGGCGGCGGGCGCA
CGCCGCGACGCTGGACGCGGCGCAGCGGTTGGGGGGCGACCTGGAGCCCG
TGGCACGCTGTTTCTGCCGCTATGACTGGCGGCGCGGGGGGGCCATCGGC
CCCGCAGCGTTTGCGCGGGCGGCGATGGCCGCAGGGTTCGCCTTCACCCG
CACCGAGCTGGCGTCGCTGGCGGCGTGCTTTGGGGACGGCGAGCGCGTCG
CATACAGCCAATTCCTGGCGTGGGCCACGCCGGACGACGCAGCGGCGGCC
GCAGCCCTTTTGGTGCCGTCCGGCGCGGCCACTGCCTACGGCAGCGGCAG
CCATGGCGCTTACGGTGGCGGCCACAGCGGTTACGGCGGCGGTGACGACG
AGGGAGAAGAAGCGATGCTGAAGCTGCGGGGGGCGATATCGCGGTCGGCG
CTCGACGCGGCGCGGCTGCGCGATGCCTTTGAGCGGCTCAACGTCAGCCG
GGGCGGCGGCAGGGGAAGCGGAAGCCGCACAGTCCCCGCCGGCGACCTTC
CGGACCTGATGCATCGCCTTGGGTTGCCGGCGACGCCGGCCGACGTCCGC
GGGCTGCTCCGCCGCTACGGCGGCGCCTGCGGCGACGGCGGCCGCGCCGA
TGCCTTTTACTACGAAGATCTGCTCACCGACCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12446:1119..1805-

>mRNA_P-wetherbeei_contig12446.1.1 ID=mRNA_P-wetherbeei_contig12446.1.1|Name=mRNA_P-wetherbeei_contig12446.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig12446:1119..1805- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGATCGCCAGAAAAAGACATCCGTCGACTGAGGCGGCGGGCGCACGC
CGCGACGCTGGACGCGGCGCAGCGGTTGGGGGGCGACCTGGAGCCCGTGG
CACGCTGTTTCTGCCGCTATGACTGGCGGCGCGGGGGGGCCATCGGCCCC
GCAGCGTTTGCGCGGGCGGCGATGGCCGCAGGGTTCGCCTTCACCCGCAC
CGAGCTGGCGTCGCTGGCGGCGTGCTTTGGGGACGGCGAGCGCGTCGCAT
ACAGCCAATTCCTGGCGTGGGCCACGCCGGACGACGCAGCGGCGGCCGCA
GCCCTTTTGGTGCCGTCCGGCGCGGCCACTGCCTACGGCAGCGGCAGCCA
TGGCGCTTACGGTGGCGGCCACAGCGGTTACGGCGGCGGTGACGACGAGG
GAGAAGAAGCGATGCTGAAGCTGCGGGGGGCGATATCGCGGTCGGCGCTC
GACGCGGCGCGGCTGCGCGATGCCTTTGAGCGGCTCAACGTCAGCCGGGG
CGGCGGCAGGGGAAGCGGAAGCCGCACAGTCCCCGCCGGCGACCTTCCGG
ACCTGATGCATCGCCTTGGGTTGCCGGCGACGCCGGCCGACGTCCGCGGG
CTGCTCCGCCGCTACGGCGGCGCCTGCGGCGACGGCGGCCGCGCCGATGC
CTTTTACTACGAAGATCTGCTCACCGACCTGCGC
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