mRNA_P-wetherbeei_contig12444.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12444.3.1
Unique NamemRNA_P-wetherbeei_contig12444.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A522VDM9_9PROT (DUF1499 domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VDM9_9PROT)

HSP 1 Score: 178 bits (452), Expect = 2.850e-55
Identity = 87/134 (64.93%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFEAAQR 402
            +F+GKRP  LGVKDGRLA  K+TPNCVSSQADP D +HYIAPI + GSA  AMA LR+ +    R  V++ E GYLYAE++S+LMGFVDDVEF   E+ GVIHVRSASRLGRRDFGVNR R++ +RA   A Q+
Sbjct:    1 MFSGKRPDYLGVKDGRLARCKRTPNCVSSQADPGDAQHYIAPIAFRGSAAGAMAALRKALGGMARASVIRSESGYLYAEFRSRLMGFVDDVEFLVDERAGVIHVRSASRLGRRDFGVNRERVEALRAAIAAEQK 134          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A1F4EFX6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4EFX6_9PROT)

HSP 1 Score: 165 bits (418), Expect = 4.390e-50
Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFEAA 396
            +FAG RP  LGVKDGRLA  K+TPNCVSSQAD +D EHYIAPI + GSA  AMA + + V++  R  V++ E GYLYAE++S+LMGFVDD EF      GVIHVRSASRLGRRDFGVNR R++ +RA   A+
Sbjct:    1 MFAGTRPDYLGVKDGRLARCKRTPNCVSSQADASDAEHYIAPIVFKGSAGQAMAAVGKAVESTARATVIRSELGYLYAEFRSRLMGFVDDAEFLFDAAAGVIHVRSASRLGRRDFGVNRERVEALRAAIAAS 132          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A1F4BQB8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24 TaxID=1797489 RepID=A0A1F4BQB8_9PROT)

HSP 1 Score: 160 bits (405), Expect = 3.560e-48
Identity = 82/130 (63.08%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADP-ADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQF 387
            +F+G RP NLGV D RLA PK+TPN V+SQ D  ADP+HYI P+RY+G A  A A LRR+VD   R  V+  +  YLYAE+ SKLMGFVDDVEF+  EK GVI VRSASRLGR D GVNR RI++IRA+ 
Sbjct:    3 LFSGTRPDNLGVHDARLAPPKRTPNNVNSQIDKNADPQHYIEPLRYTGDAKQAWAALRRVVDGMQRVKVISTDANYLYAEFTSKLMGFVDDVEFYLDEKAGVIQVRSASRLGRGDLGVNRERIESIRAKL 132          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A1F4F631_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F631_9PROT)

HSP 1 Score: 159 bits (403), Expect = 7.170e-48
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFE 390
            +F+ KRP+NLGVKDGRLA  ++TPNCV SQA  +D EHYIAPIR+ G A  AMA  R+ +++  R  V++HE  YL+AE++S+LM FVDDVE    E   VIHVRSASRLGRRDFGVNR R++ +R+  E
Sbjct:    1 MFSWKRPANLGVKDGRLAPCRRTPNCVCSQAGRSDAEHYIAPIRFDGDAAAAMAAARKAIESLPRATVIRHEANYLHAEFRSRLMRFVDDVELSYDENADVIHVRSASRLGRRDFGVNRERVEALRSLIE 130          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A1F4CB16_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CB16_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.380e-46
Identity = 83/130 (63.85%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADP-ADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQF 387
            +F+G RP NLGV+D RLA PK+TPN V+SQ D  ADP HYI P+RYSG A  A A LRRIVD   R  VVK E  YLYAE+ SK +GFVDD EF+  EK GVI VRSASRLG  D GVNR RI+ IRA+ 
Sbjct:    3 LFSGTRPDNLGVRDARLAPPKRTPNNVNSQIDRNADPVHYIEPLRYSGDAGQAWAALRRIVDRMKRVTVVKSEPNYLYAEFSSKRLGFVDDTEFYLDEKAGVIQVRSASRLGTGDHGVNRGRIEYIRAKL 132          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A521XCR0_9PROT (DUF1499 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XCR0_9PROT)

HSP 1 Score: 155 bits (393), Expect = 2.530e-46
Identity = 83/134 (61.94%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADP-ADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFEAAQ 399
            +F+G RP NLGV D RLA PK+TPN V+SQ D  ADP HYI P+RY G A  A  TL  IV    R  V +    YLYAE+ SKLMGFVDD EF+  EK GVIHVRSASRLGRRDFGVNR RI++IRA+   A+
Sbjct:    3 LFSGTRPDNLGVHDARLAPPKRTPNNVNSQIDKNADPGHYIEPLRYRGDARKAWETLHDIVSGMPRVKVAQSGPNYLYAEFTSKLMGFVDDTEFYLDEKAGVIHVRSASRLGRRDFGVNRERIESIRAKLAQAK 136          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A537ABG0_9PROT (DUF1499 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537ABG0_9PROT)

HSP 1 Score: 155 bits (392), Expect = 2.710e-46
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIR 378
            +F+ KRP+NLGVKDGRLA  K+TPNCVSSQADPAD +H+IAPI + GS    M  LRR V++  R  V+  E  YLYAE+++KLM +VDD+E +  EK G++HVRSASRLGRRDFGVNR R++ +R
Sbjct:    1 MFSWKRPANLGVKDGRLAPCKRTPNCVSSQADPADRDHHIAPIAFRGS----MQELRRAVESMERASVISAERNYLYAEFRTKLMRYVDDLELYYDEKQGLVHVRSASRLGRRDFGVNRNRVEALR 122          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: UPI001F54DAEA (DUF1499 domain-containing protein n=2 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI001F54DAEA)

HSP 1 Score: 157 bits (396), Expect = 3.650e-46
Identity = 77/135 (57.04%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    4 FAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFEAAQRNA 408
            F+GKRP+NLGVKDG+LAA   +PNCV+SQ + +D EH IAP+ Y      AMATL+ ++++  RT ++     YLYAE+ S LMGFVDDVEF+ +  DGVIHVRSASRLG+ D GVNR RI+ IR QF A +  A
Sbjct:   49 FSGKRPTNLGVKDGKLAACPASPNCVNSQLEASDQEHAIAPLTYQSEPTKAMATLKSVIESMPRTKIISETDDYLYAEFTSALMGFVDDVEFYLSPVDGVIHVRSASRLGQSDLGVNRNRIEDIRNQFSALEAKA 183          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: A0A537CLA2_9PROT (DUF1499 domain-containing protein n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CLA2_9PROT)

HSP 1 Score: 155 bits (391), Expect = 5.420e-46
Identity = 76/132 (57.58%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQFEAA 396
            +F+ KRP NLGV + RLA  K+TPNCVSSQADPAD EHY+API + G   DA+A +RR+V    RT +++ E  YLYAE+++ LM +VDDVEF   ++ GVIHVRSASRLGRRDFGVNR R++ +R++  ++
Sbjct:    1 MFSWKRPGNLGVGNARLAPCKRTPNCVSSQADPADAEHYVAPIPFKG---DAIAAVRRVVLGIPRTTIIRAETNYLYAEFRTPLMRYVDDVEFFHDDQAGVIHVRSASRLGRRDFGVNRKRVEELRSRLSSS 129          
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Match: UPI0019E58EA3 (DUF1499 domain-containing protein n=1 Tax=Thermoleptolyngbya sp. C42_A2020_037 TaxID=2747799 RepID=UPI0019E58EA3)

HSP 1 Score: 153 bits (387), Expect = 4.750e-45
Identity = 74/128 (57.81%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    4 FAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAVDAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDGVIHVRSASRLGRRDFGVNRARIDTIRAQF 387
            F+G RP+NLGVKDG+LAA   +PNCV+SQA  +D EHYIAP+ YSG++ +A+A L+ I+ A  RT ++     YLYAE+ S LMGFVDDVEF+  E  GV+ VRSASRLG+ D GVNR R++ IRA+ 
Sbjct:   37 FSGSRPTNLGVKDGKLAACPSSPNCVNSQAPASDAEHYIAPLSYSGTSAEAIARLKGIITAMPRTQIITESENYLYAEFTSALMGFVDDVEFYVDEAAGVVQVRSASRLGQSDLGVNRKRVEEIRAKL 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12444.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A522VDM9_9PROT2.850e-5564.93DUF1499 domain-containing protein n=2 Tax=Betaprot... [more]
A0A1F4EFX6_9PROT4.390e-5062.88Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4BQB8_9PROT3.560e-4863.08Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F631_9PROT7.170e-4859.23Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4CB16_9PROT2.380e-4663.85Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521XCR0_9PROT2.530e-4661.94DUF1499 domain-containing protein n=1 Tax=Betaprot... [more]
A0A537ABG0_9PROT2.710e-4661.11DUF1499 domain-containing protein n=1 Tax=Betaprot... [more]
UPI001F54DAEA3.650e-4657.04DUF1499 domain-containing protein n=2 Tax=Oscillat... [more]
A0A537CLA2_9PROT5.420e-4657.58DUF1499 domain-containing protein n=5 Tax=Betaprot... [more]
UPI0019E58EA34.750e-4557.81DUF1499 domain-containing protein n=1 Tax=Thermole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12444contigP-wetherbeei_contig12444:1369..1788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog56107.Cylst_1563
PFAMsDUF1499
Model size420
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.21e-43
EggNOG OGsCOG4446@1|root,COG4446@2|Bacteria,1G6W2@1117|Cyanobacteria,1HNRG@1161|Nostocales
DescriptionProtein of unknown function (DUF1499)
Cds size420
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.1650825-CDS-P-wetherbeei_contig12444:1368..17881683185949.1650825-CDS-P-wetherbeei_contig12444:1368..1788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12444 1369..1788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12444.3.1prot_P-wetherbeei_contig12444.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12444 1369..1788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12444.3.1

>prot_P-wetherbeei_contig12444.3.1 ID=prot_P-wetherbeei_contig12444.3.1|Name=mRNA_P-wetherbeei_contig12444.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
VFAGKRPSNLGVKDGRLAAPKQTPNCVSSQADPADPEHYIAPIRYSGSAV
DAMATLRRIVDAAGRTLVVKHEGGYLYAEYKSKLMGFVDDVEFHAAEKDG
VIHVRSASRLGRRDFGVNRARIDTIRAQFEAAQRNAAKA*
back to top

mRNA from alignment at P-wetherbeei_contig12444:1369..1788-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12444.3.1 ID=mRNA_P-wetherbeei_contig12444.3.1|Name=mRNA_P-wetherbeei_contig12444.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig12444:1369..1788- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCGCAGGCAAGCGCCCCTCCAACCTCGGCGTCAAGGACGGCCGGCT CGCCGCGCCGAAGCAGACGCCCAACTGCGTATCCAGCCAGGCGGATCCCG CCGACCCGGAGCACTACATCGCCCCGATCAGGTACTCCGGCAGCGCGGTC GACGCCATGGCCACCCTGCGCAGGATCGTCGACGCCGCCGGGCGCACTCT CGTAGTGAAGCACGAGGGGGGCTATCTCTACGCCGAATACAAGTCGAAGC TGATGGGGTTCGTCGACGACGTGGAGTTCCATGCCGCCGAAAAGGACGGC GTGATCCACGTGCGCTCGGCCTCGCGCCTCGGGCGCAGGGACTTCGGCGT CAACCGCGCGAGGATCGACACCATCCGCGCGCAGTTTGAGGCCGCGCAGC GCAACGCCGCGAAGGCCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12444:1369..1788-

>mRNA_P-wetherbeei_contig12444.3.1 ID=mRNA_P-wetherbeei_contig12444.3.1|Name=mRNA_P-wetherbeei_contig12444.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig12444:1369..1788- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTCGCAGGCAAGCGCCCCTCCAACCTCGGCGTCAAGGACGGCCGGCT
CGCCGCGCCGAAGCAGACGCCCAACTGCGTATCCAGCCAGGCGGATCCCG
CCGACCCGGAGCACTACATCGCCCCGATCAGGTACTCCGGCAGCGCGGTC
GACGCCATGGCCACCCTGCGCAGGATCGTCGACGCCGCCGGGCGCACTCT
CGTAGTGAAGCACGAGGGGGGCTATCTCTACGCCGAATACAAGTCGAAGC
TGATGGGGTTCGTCGACGACGTGGAGTTCCATGCCGCCGAAAAGGACGGC
GTGATCCACGTGCGCTCGGCCTCGCGCCTCGGGCGCAGGGACTTCGGCGT
CAACCGCGCGAGGATCGACACCATCCGCGCGCAGTTTGAGGCCGCGCAGC
GCAACGCCGCGAAGGCCTAG
back to top