mRNA_P-wetherbeei_contig12443.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12443.2.1
Unique NamemRNA_P-wetherbeei_contig12443.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12443.2.1 vs. uniprot
Match: A0A354TG67_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A354TG67_9BACT)

HSP 1 Score: 309 bits (791), Expect = 3.840e-103
Identity = 154/256 (60.16%), Postives = 189/256 (73.83%), Query Frame = 1 
Query:    1 MNESISMRGMSYVPLDPQWMTESPAFQSGNPALVRAFVKLLTYAWQAVPAGTVPSSFRVIGDICGLTEQQVGDHHAELFEGWELHEGRLRFMPLYALCGRVSARYADVLGQLQDQAAGVMQAPEEFELRAPEVVTSAKKGKHRLPKDWKPSERLRQWLSEHDFITPEDCEFIVEKFTSHFHANGEMRLNWDDSFRNYALKENRLNLPSRRLRMPPVSGAGGGRAARFGAAGVASQAHNASVLSGAAQRAGHRGENC 768
            M+E ++MRGM YVPLDPQW+ ESPAF S NP +VRA + LL+YAW AVPAGTVP+ F+ +  I GL+EQ +G++H +LF+GWEL +GR+RF+P+YA+C RVSARY DVL +L DQ A VMQAPEEFEL A EV    K G+ +LP  WK S  L  WL   D+  PED EF+ EKF SH+ A GE+R  WDDSFRN+ LKEN +NLPSRRLR        G RA RFG+AGVA+QAHN SVL+ AA+RAG R  +C
Sbjct:    1 MSEPLNMRGMPYVPLDPQWIAESPAFHSSNPQVVRACLNLLSYAWAAVPAGTVPAGFKALASITGLSEQDLGENHDDLFQGWELIDGRMRFLPMYAVCERVSARYGDVLSKLADQGAAVMQAPEEFELVAEEVAPQTK-GRTKLPNTWKVSPDLMSWLRSKDYTAPEDIEFVTEKFMSHYRATGELRSRWDDSFRNFVLKENVMNLPSRRLRPLHAGPQAGSRANRFGSAGVAAQAHNGSVLAAAAERAGLREAHC 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12443.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A354TG67_9BACT3.840e-10360.16Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12443contigP-wetherbeei_contig12443:558..1334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185949.1190083-CDS-P-wetherbeei_contig12443:557..13341683185949.1190083-CDS-P-wetherbeei_contig12443:557..1334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12443 558..1334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12443.2.1prot_P-wetherbeei_contig12443.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12443 558..1334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12443.2.1

>prot_P-wetherbeei_contig12443.2.1 ID=prot_P-wetherbeei_contig12443.2.1|Name=mRNA_P-wetherbeei_contig12443.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MNESISMRGMSYVPLDPQWMTESPAFQSGNPALVRAFVKLLTYAWQAVPA
GTVPSSFRVIGDICGLTEQQVGDHHAELFEGWELHEGRLRFMPLYALCGR
VSARYADVLGQLQDQAAGVMQAPEEFELRAPEVVTSAKKGKHRLPKDWKP
SERLRQWLSEHDFITPEDCEFIVEKFTSHFHANGEMRLNWDDSFRNYALK
ENRLNLPSRRLRMPPVSGAGGGRAARFGAAGVASQAHNASVLSGAAQRAG
HRGENCHA*
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mRNA from alignment at P-wetherbeei_contig12443:558..1334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12443.2.1 ID=mRNA_P-wetherbeei_contig12443.2.1|Name=mRNA_P-wetherbeei_contig12443.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig12443:558..1334- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAATCGATTTCCATGCGAGGCATGTCCTACGTACCGCTGGATCC
CCAGTGGATGACGGAGTCGCCTGCCTTCCAATCTGGCAACCCGGCATTGG
TTCGGGCGTTCGTAAAGCTGTTGACCTATGCGTGGCAGGCCGTTCCTGCA
GGCACGGTGCCGTCGTCCTTCCGGGTGATTGGCGACATCTGCGGGCTCAC
CGAGCAGCAGGTTGGCGATCACCATGCCGAGCTCTTCGAGGGGTGGGAAT
TGCACGAAGGCCGGTTGCGCTTCATGCCGTTGTATGCACTTTGCGGGAGA
GTATCAGCGCGCTATGCTGATGTGCTGGGGCAACTCCAGGATCAGGCTGC
CGGCGTCATGCAGGCACCAGAGGAGTTTGAGTTGCGGGCGCCTGAAGTGG
TGACCAGTGCAAAAAAGGGCAAGCATCGTCTGCCCAAAGACTGGAAGCCT
TCCGAGCGGCTGCGCCAGTGGCTTTCCGAGCACGATTTCATCACGCCCGA
GGATTGCGAGTTCATCGTTGAGAAGTTCACCTCCCACTTCCACGCCAATG
GCGAGATGCGTCTTAACTGGGATGACTCTTTCCGCAACTACGCACTCAAA
GAAAACCGCCTGAACTTGCCAAGCCGCCGTCTCCGCATGCCGCCAGTGTC
TGGTGCGGGTGGTGGTCGTGCCGCACGATTTGGGGCCGCCGGCGTGGCAT
CGCAAGCACACAATGCCAGTGTCCTTTCTGGCGCCGCCCAGCGAGCAGGA
CACCGCGGGGAGAACTGCCATGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12443:558..1334-

>mRNA_P-wetherbeei_contig12443.2.1 ID=mRNA_P-wetherbeei_contig12443.2.1|Name=mRNA_P-wetherbeei_contig12443.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig12443:558..1334- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGAATCGATTTCCATGCGAGGCATGTCCTACGTACCGCTGGATCC
CCAGTGGATGACGGAGTCGCCTGCCTTCCAATCTGGCAACCCGGCATTGG
TTCGGGCGTTCGTAAAGCTGTTGACCTATGCGTGGCAGGCCGTTCCTGCA
GGCACGGTGCCGTCGTCCTTCCGGGTGATTGGCGACATCTGCGGGCTCAC
CGAGCAGCAGGTTGGCGATCACCATGCCGAGCTCTTCGAGGGGTGGGAAT
TGCACGAAGGCCGGTTGCGCTTCATGCCGTTGTATGCACTTTGCGGGAGA
GTATCAGCGCGCTATGCTGATGTGCTGGGGCAACTCCAGGATCAGGCTGC
CGGCGTCATGCAGGCACCAGAGGAGTTTGAGTTGCGGGCGCCTGAAGTGG
TGACCAGTGCAAAAAAGGGCAAGCATCGTCTGCCCAAAGACTGGAAGCCT
TCCGAGCGGCTGCGCCAGTGGCTTTCCGAGCACGATTTCATCACGCCCGA
GGATTGCGAGTTCATCGTTGAGAAGTTCACCTCCCACTTCCACGCCAATG
GCGAGATGCGTCTTAACTGGGATGACTCTTTCCGCAACTACGCACTCAAA
GAAAACCGCCTGAACTTGCCAAGCCGCCGTCTCCGCATGCCGCCAGTGTC
TGGTGCGGGTGGTGGTCGTGCCGCACGATTTGGGGCCGCCGGCGTGGCAT
CGCAAGCACACAATGCCAGTGTCCTTTCTGGCGCCGCCCAGCGAGCAGGA
CACCGCGGGGAGAACTGCCATGCGTGA
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