mRNA_P-wetherbeei_contig12441.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12441.1.1
Unique NamemRNA_P-wetherbeei_contig12441.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: A0A3S0EDI5_9HYPH (Response regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0EDI5_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 5.940e-24
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEFK 336
             +VI+DDS ++L+VLK L+       + TFT   AG+ +LA ++A LI+VD  MP +DGI  +S VR    H  TPIIMVT+ +  D+ ++A+ AG + F+ KP+N  E+K
Sbjct:    2 AVVIIDDSLSSLVVLKHLSAAAQTGRIETFTDPRAGLAYLAEHSAELIIVDFVMPHVDGITLVSAVRGNPRHVATPIIMVTQSSEEDLHERAVAAGVDNFMPKPVNLQEYK 112          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: A0A3S0FKB6_9HYPH (Response regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0FKB6_9HYPH)

HSP 1 Score: 93.6 bits (231), Expect = 4.800e-22
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEFK 336
             IVIVDDSAT LIVLK +A    E  V+ F+ A   + FLA   A +I+ D  MP+MDGIQF   VR   H A TPI+MVT  T  ++   A  AG   F+ KP+N+  FK
Sbjct:   31 AIVIVDDSATALIVLKSVAAQRREREVVPFSKASDALAFLADKPADVIVSDYSMPEMDGIQFTRAVREFAHLAATPIVMVTAATEPEVTSNARAAGVTHFMHKPINALFFK 141          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: A0A133XNQ5_9RHOO (Transcriptional regulator n=2 Tax=Dechloromonas TaxID=73029 RepID=A0A133XNQ5_9RHOO)

HSP 1 Score: 90.1 bits (222), Expect = 3.850e-19
Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 IVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
            ++I+DDS  NL ++K L     E   + F + L  +E+   N   L++VD  MPDMDG++FIS  R+       PI+MVT +   D+R +AL+ GAN+FL+KP++  EF
Sbjct:    4 VLIIDDSDINLTLIKALVMKLGECEAVLFANPLKALEWCRSNVPDLVIVDYMMPDMDGLKFISAFRALHGRDEVPILMVTANDQKDVRYEALLGGANDFLTKPIDRIEF 112          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: UPI00193B1C4B (response regulator n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193B1C4B)

HSP 1 Score: 88.2 bits (217), Expect = 1.990e-18
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    7 IVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEFK 336
            I IVDDS  NL +LK L     +   L F+ +  G+ + AGN   LI+VD  MP++DGI FI  +R+   H   PI+M+T +   ++R +AL  GA +FL+KP+++AEF+
Sbjct:    4 IAIVDDSEINLTLLKHLVLKLGDCEPLLFSDSPQGLAWCAGNDPDLIIVDYMMPELDGISFIERLRAVPGHEELPILMITANDDKEVRYEALARGATDFLTKPVDTAEFR 113          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: Q47BZ9_DECAR (Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain n=8 Tax=Betaproteobacteria TaxID=28216 RepID=Q47BZ9_DECAR)

HSP 1 Score: 86.3 bits (212), Expect = 1.020e-17
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
             ++IVDDS  NL ++K L     +   + F + L+ +E+   N   L++VD  MPDMDG++FIS  R+       P++M+T +   D+R  AL+ GAN+FL+KP++  EF
Sbjct:    3 SVLIVDDSDINLTLIKALVLKLGDCSPILFDNPLSALEWCRENVPDLVIVDYMMPDMDGLRFISAFRALHGRDEIPVLMITANDQKDVRYDALLGGANDFLTKPIDRIEF 112          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: A0A4Y4D282_ZOORA (Two-component system response regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A4Y4D282_ZOORA)

HSP 1 Score: 85.9 bits (211), Expect = 1.370e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQ--TTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
             I IVDD+  NL +++ L +  T  E  ++TF+  L G+++ A N   L++VD  MPD++GI FI T+R  +     PI+MVT     ++R + L AGAN+FL+KP++  EF
Sbjct:    2 AIAIVDDTPLNLTLIQALVRKLTPPETEIVTFSQPLEGLQWCASNEPDLLIVDYMMPDINGIDFIRTLRKLYPADSVPILMVTAAHEKEVRYECLRAGANDFLTKPIDRNEF 113          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: UPI001CFC3C91 (response regulator n=2 Tax=Quatrionicoccus australiensis TaxID=138118 RepID=UPI001CFC3C91)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-17
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 IVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
            ++I+DDS  NL +++ L     E   + F + L  +++   N   L++VD  MPDMDG++FIS  R+       PI+MVT +   D+R +AL+ GAN+FL+KP++  EF
Sbjct:    4 VLIIDDSDINLTLIRALVMKLGECSPVLFENPLKALDWCRENVPDLVIVDYMMPDMDGLRFISAFRALHGRDEVPILMVTANDQRDVRYEALLGGANDFLTKPIDRVEF 112          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: UPI00040F9E35 (response regulator n=1 Tax=Azonexus hydrophilus TaxID=418702 RepID=UPI00040F9E35)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-17
Identity = 40/109 (36.70%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 IVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
            ++I+DDS  NL +++ L     E   + F   L  +E+  GN   L++VD  MP+MDG++FI+  R+       P++M+T +   D+R +AL+ GAN+FL+KP++  EF
Sbjct:    4 VLIIDDSEINLTLIRALVLKLGECEPVMFDHPLKALEWCRGNVPDLVIVDYMMPEMDGLRFIAAFRALHGRTEIPVLMITANDQKDVRYEALLGGANDFLTKPIDRIEF 112          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: UPI0012916A42 (response regulator n=1 Tax=Zoogloea sp. 1C4 TaxID=2570190 RepID=UPI0012916A42)

HSP 1 Score: 85.5 bits (210), Expect = 1.900e-17
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQ--TTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
             I IVDD+  NL +++ L +  T     ++TF+S L G+++   +   L++VD  MPD++GI+FI TVR  +     PI+MVT     ++R ++L AGAN+FL+KP++  EF
Sbjct:    2 AIAIVDDTPLNLTLIQALVRKLTPPGTEIVTFSSPLEGLQWCGSHEPDLVIVDYMMPDLNGIEFIETVRKLYPADTVPILMVTAAHEKEVRYESLAAGANDFLTKPIDRHEF 113          
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Match: A0A6C2D5Y7_9RHOO (Response regulator n=1 Tax=Zoogloea oleivorans TaxID=1552750 RepID=A0A6C2D5Y7_9RHOO)

HSP 1 Score: 85.5 bits (210), Expect = 1.910e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    4 GIVIVDDSATNLIVLKRLAQ--TTCEVPVLTFTSALAGIEFLAGNAASLILVDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANEFLSKPLNSAEF 333
             I IVDD+  NL +++ L +  T     ++ FTS L G+++ + +   L++VD  MPD++GI+FIS VR      V PI+MVT     ++R + L AGAN+FL+KP++  EF
Sbjct:    2 AIAIVDDTPINLTLIQALVRKLTPAGTEIVCFTSPLEGLQWCSDHEPDLVIVDYMMPDLNGIEFISAVRKLHSADVVPILMVTAAHEKEVRYQCLTAGANDFLTKPIDRHEF 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S0EDI5_9HYPH5.940e-2443.24Response regulator n=1 Tax=Hyphomicrobiales bacter... [more]
A0A3S0FKB6_9HYPH4.800e-2247.75Response regulator n=1 Tax=Hyphomicrobiales bacter... [more]
A0A133XNQ5_9RHOO3.850e-1940.37Transcriptional regulator n=2 Tax=Dechloromonas Ta... [more]
UPI00193B1C4B1.990e-1841.82response regulator n=1 Tax=Azospira restricta TaxI... [more]
Q47BZ9_DECAR1.020e-1738.18Response regulator receiver:Metal-dependent phosph... [more]
A0A4Y4D282_ZOORA1.370e-1740.18Two-component system response regulator n=2 Tax=Ba... [more]
UPI001CFC3C911.420e-1738.53response regulator n=2 Tax=Quatrionicoccus austral... [more]
UPI00040F9E351.420e-1736.70response regulator n=1 Tax=Azonexus hydrophilus Ta... [more]
UPI0012916A421.900e-1739.29response regulator n=1 Tax=Zoogloea sp. 1C4 TaxID=... [more]
A0A6C2D5Y7_9RHOO1.910e-1740.18Response regulator n=1 Tax=Zoogloea oleivorans Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12441contigP-wetherbeei_contig12441:1394..1729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog864051.BurJ1DRAFT_0271
PFAMsHD,HD_5,Response_reg
Model size336
Max annot lvl28216|Betaproteobacteria
KEGG koko:K07814,ko:K13815
KEGG Pathwayko02020,ko02024,map02020,map02024
KEGG ModuleM00517
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-19
EggNOG OGsCOG3437@1|root,COG3437@2|Bacteria,1MUB8@1224|Proteobacteria,2VH1F@28216|Betaproteobacteria,1KKWQ@119065|unclassified Burkholderiales
Descriptionmetal-dependent phosphohydrolase HD sub domain
Cds size336
COG categoryT
BRITEko00000,ko00001,ko00002,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.933369-CDS-P-wetherbeei_contig12441:1393..17291683185948.933369-CDS-P-wetherbeei_contig12441:1393..1729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12441 1394..1729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12441.1.1prot_P-wetherbeei_contig12441.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12441 1394..1729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12441.1.1

>prot_P-wetherbeei_contig12441.1.1 ID=prot_P-wetherbeei_contig12441.1.1|Name=mRNA_P-wetherbeei_contig12441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
VGIVIVDDSATNLIVLKRLAQTTCEVPVLTFTSALAGIEFLAGNAASLIL
VDCEMPDMDGIQFISTVRSQWHHAVTPIIMVTRHTASDIRQKALMAGANE
FLSKPLNSAEFK
back to top

mRNA from alignment at P-wetherbeei_contig12441:1394..1729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12441.1.1 ID=mRNA_P-wetherbeei_contig12441.1.1|Name=mRNA_P-wetherbeei_contig12441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig12441:1394..1729+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGGAATCGTCATAGTTGACGACAGCGCGACCAACCTCATCGTCCTGAA ACGCCTTGCGCAGACCACATGCGAGGTGCCGGTACTAACGTTTACGAGCG CGTTAGCGGGTATCGAATTCCTGGCTGGCAATGCAGCAAGCCTAATACTG GTCGACTGCGAAATGCCGGATATGGATGGCATCCAGTTCATTTCGACCGT GCGTTCCCAGTGGCACCACGCAGTTACGCCAATAATCATGGTGACAAGGC ACACGGCGTCGGATATTCGGCAAAAGGCCCTAATGGCTGGCGCGAACGAG TTTCTCAGCAAGCCATTGAACAGCGCTGAATTCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12441:1394..1729+

>mRNA_P-wetherbeei_contig12441.1.1 ID=mRNA_P-wetherbeei_contig12441.1.1|Name=mRNA_P-wetherbeei_contig12441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig12441:1394..1729+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGGAATCGTCATAGTTGACGACAGCGCGACCAACCTCATCGTCCTGAA
ACGCCTTGCGCAGACCACATGCGAGGTGCCGGTACTAACGTTTACGAGCG
CGTTAGCGGGTATCGAATTCCTGGCTGGCAATGCAGCAAGCCTAATACTG
GTCGACTGCGAAATGCCGGATATGGATGGCATCCAGTTCATTTCGACCGT
GCGTTCCCAGTGGCACCACGCAGTTACGCCAATAATCATGGTGACAAGGC
ACACGGCGTCGGATATTCGGCAAAAGGCCCTAATGGCTGGCGCGAACGAG
TTTCTCAGCAAGCCATTGAACAGCGCTGAATTCAAG
back to top