mRNA_P-wetherbeei_contig12433.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12433.2.1
Unique NamemRNA_P-wetherbeei_contig12433.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12433.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12433contigP-wetherbeei_contig12433:1193..1501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog272558.10174663
PFAMsLant_dehydr_N
Model size309
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.21e-06
EggNOG OGsCOG0640@1|root,COG0640@2|Bacteria,1VRE6@1239|Firmicutes,4HV72@91061|Bacilli
DescriptionLantibiotic dehydratase, C terminus
Cds size288
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.7397509-UTR-P-wetherbeei_contig12433:1192..12131683185948.7397509-UTR-P-wetherbeei_contig12433:1192..1213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12433 1193..1213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.7517548-CDS-P-wetherbeei_contig12433:1213..15011683185948.7517548-CDS-P-wetherbeei_contig12433:1213..1501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12433 1214..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12433.2.1prot_P-wetherbeei_contig12433.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12433 1214..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12433.2.1

>prot_P-wetherbeei_contig12433.2.1 ID=prot_P-wetherbeei_contig12433.2.1|Name=mRNA_P-wetherbeei_contig12433.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MPFARLLDFGGPLRREQLWALLDDEEFVDCLATMHPRSLLTLESRRRKWK
AGSRPSDVRRAELTLYRYLVRFCSRNDTTGTAGSTFWGRLGRESTL
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mRNA from alignment at P-wetherbeei_contig12433:1193..1501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12433.2.1 ID=mRNA_P-wetherbeei_contig12433.2.1|Name=mRNA_P-wetherbeei_contig12433.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig12433:1193..1501+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCTGTCGGTGCGCCGGTATGCCCTTTGCACGGCTCCTCGATTTCGG
CGGGCCTCTCCGACGGGAGCAGCTCTGGGCGCTCCTTGATGACGAAGAAT
TCGTCGACTGCCTGGCTACGATGCACCCTCGTTCCTTGTTGACTCTCGAG
AGCCGTCGGCGGAAATGGAAAGCGGGCTCACGTCCCTCTGATGTTCGCCG
CGCCGAGCTGACCTTGTATCGCTATCTGGTGCGATTCTGCAGTCGCAACG
ACACGACAGGAACCGCCGGCAGCACGTTCTGGGGGAGATTGGGGAGAGAA
TCCACGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12433:1193..1501+

>mRNA_P-wetherbeei_contig12433.2.1 ID=mRNA_P-wetherbeei_contig12433.2.1|Name=mRNA_P-wetherbeei_contig12433.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig12433:1193..1501+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTTTGCACGGCTCCTCGATTTCGGCGGGCCTCTCCGACGGGAGCA
GCTCTGGGCGCTCCTTGATGACGAAGAATTCGTCGACTGCCTGGCTACGA
TGCACCCTCGTTCCTTGTTGACTCTCGAGAGCCGTCGGCGGAAATGGAAA
GCGGGCTCACGTCCCTCTGATGTTCGCCGCGCCGAGCTGACCTTGTATCG
CTATCTGGTGCGATTCTGCAGTCGCAACGACACGACAGGAACCGCCGGCA
GCACGTTCTGGGGGAGATTGGGGAGAGAATCCACGCTT
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