mRNA_P-wetherbeei_contig12433.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12433.1.1
Unique NamemRNA_P-wetherbeei_contig12433.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A7C5XTN0_9GAMM (PIN domain-containing protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5XTN0_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 8.620e-34
Identity = 69/125 (55.20%), Postives = 83/125 (66.40%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            M  LDASAL+AFL  E G ERV   L G+CMS +N  EVL+RFA+DG D   +   +R S +E+VPF A+ A  AA L      LGLS GDRACLALA  R + ALTADR W  L++G+EI CIR
Sbjct:    1 MTALDASALLAFLFREPGHERVAPHLSGACMSTVNLGEVLTRFARDGHDPALVLARLRESPLELVPFLAEHAALAAALEPRVRRLGLSFGDRACLALALARRVPALTADRAWLALDLGVEIRCIR 125          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A1V5L7M6_9ACTN (tRNA(fMet)-specific endonuclease VapC n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A1V5L7M6_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 8.620e-34
Identity = 66/125 (52.80%), Postives = 88/125 (70.40%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            MI LDASAL+AFL  E G E V  +L+ SC+S++N +EVL RFA+DG D + + + +RRS +E+VPF A++A   A L   T  LGLSLGDRACLALA  RG+ A+TAD  W  L+VG+ +  +R
Sbjct:    1 MIALDASALLAFLFREPGHEMVAQKLEESCISSVNLAEVLGRFARDGHDPRMVFEHLRRSPLEMVPFLAEDAALVAALAPRTRTLGLSLGDRACLALAATRGIPAVTADSAWLSLDVGVRVHLVR 125          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A7Z9Y1K2_9CHLR (PIN domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9Y1K2_9CHLR)

HSP 1 Score: 121 bits (303), Expect = 7.850e-32
Identity = 65/125 (52.00%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            MI LDASAL+AFL  E G E V   +   C+S +N SEV+ RFA+DG D Q   Q I  + IEIVPF+A  A   A  L  T  LGL L DRACLALA +R + ALTAD++W + +VG+E+  IR
Sbjct:    1 MIALDASALLAFLFRETGHEEVASHIDDCCLSTVNLSEVIGRFARDGHDAQVALQKITATNIEIVPFSASHAALTAAFLPQTRALGLPLTDRACLALALSRNIPALTADQVWQQTDVGVEVILIR 125          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A849UZ77_9GAMM (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Methyloglobulus sp. TaxID=2518622 RepID=A0A849UZ77_9GAMM)

HSP 1 Score: 117 bits (293), Expect = 3.370e-30
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECI 617
            MIVLDASAL+A+L  E G E V   ++ +C+S +N SEV+ RF +DG+D+  L Q + ++ IEIVPF  + AL AAEL+  T   GL LGDRACL LA  R L  LTAD +W  +E G+++E I
Sbjct:    1 MIVLDASALLAYLFRETGHEIVEQYIEDACISTVNLSEVVGRFIRDGIDVTPLIQHLEKTSIEIVPFNQEHALHAAELIPLTKPYGLLLGDRACLGLASTRNLAILTADVVWAEIE-GLDLEII 123          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: W0DQ04_9GAMM (Twitching motility protein PilT n=3 Tax=Thioalkalivibrio TaxID=106633 RepID=W0DQ04_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 3.660e-30
Identity = 61/124 (49.19%), Postives = 84/124 (67.74%), Query Frame = 3
Query:  249 IVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            +VLDASAL+AFL DE G E+V   L+G+ +S +N+SE+L +  + GVD+  +GQ     G+   PF +++A TAA L   T + GLSL  RACLALA ++GL  +TADR W RL +GIEI  +R
Sbjct:    3 VVLDASALLAFLHDEPGGEKVSPALEGARVSVVNWSELLQKSLRQGVDVAGMGQEFTEVGVRFEPFTSQQAETAAWLWSHTRNHGLSLAGRACLALAMDKGLPVITADRAWARLNLGIEIRVLR 126          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A6P2D1U4_9BACT (PINc domain-containing protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D1U4_9BACT)

HSP 1 Score: 115 bits (289), Expect = 1.060e-29
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 3
Query:  249 IVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            + LDASAL+AFL DE G   V   L  + +S++NY E L+R    G  +      + R  +E+VPF ++ A   A L   T HLGLSLGDRACLALA  RGL ALTAD++WTRL++G+ + CIR
Sbjct:    4 VALDASALLAFLFDEPGAGAVAPLLSRAALSSVNYCETLTRLVARGKPLADSVSALARLRLEVVPFDSELAAVTASLREPTKHLGLSLGDRACLALALARGLPALTADQLWTRLDIGVRVNCIR 127          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A1R4H2D3_9GAMM (PilT protein domain protein n=1 Tax=Crenothrix polyspora TaxID=360316 RepID=A0A1R4H2D3_9GAMM)

HSP 1 Score: 114 bits (285), Expect = 4.130e-29
Identity = 61/126 (48.41%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLE-VGIEIECIR 620
            MIVLDASAL+A+L  E G + V   ++ +C+S +N SEV  RF++DG+D+  + Q I ++ IEI+PF    AL AA+ +  T H GLSLGDRACL LA  + L  LTAD  W+ +E + I+I  IR
Sbjct:    1 MIVLDASALLAYLFRESGHDIVEKYIENACISTVNLSEVAGRFSRDGIDVTPIIQHIEKTSIEIIPFTQIHALYAADFIPKTKHYGLSLGDRACLGLATAKNLAVLTADAAWSEIEDISIKIIQIR 126          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A7V9FK76_9ACTN (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9FK76_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 1.040e-28
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  255 LDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            +DASAL+A L  E G E   + L+ + +S +N+SEV  R+   GVD+  L   +   G+EIVP   ++A  AAEL   T  LGLSLGDRACLALA+  GL ALTADR W  L+VG+E++ IR
Sbjct:    1 MDASALLALLHSEPGAEVAEEALEQAAISTVNWSEVYQRWVTRGVDVAGLRADVEALGLEIVPLTVEDAEQAAELWSRTRQLGLSLGDRACLALARRLGLPALTADRAWLDLDVGVEVQAIR 122          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: UPI00053BED02 (type II toxin-antitoxin system VapC family toxin n=1 Tax=Sphingomonas sp. 35-24ZXX TaxID=1545915 RepID=UPI00053BED02)

HSP 1 Score: 113 bits (282), Expect = 1.170e-28
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  252 VLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            VLDAS ++A + +E G   V + L  S MS++NYSEVL+R  + G++  +L + I R GI+IVPF+  EA   A L   T H GLS  DRACLALAQ RG+ ALTADR W  L VG++I+ IR
Sbjct:    4 VLDASVVLAVIFEEPGGNDVAELLSDSVMSSVNYSEVLTRCLERGMESASLERQIARLGIDIVPFSVAEARLGAALRQPTRHRGLSFADRACLALAQLRGMPALTADRQWQGLGVGVDIQLIR 126          
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Match: A0A3A0AVQ2_9CHLR (PINc domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AVQ2_9CHLR)

HSP 1 Score: 112 bits (280), Expect = 2.260e-28
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 3
Query:  246 MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDIQALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQNRGLHALTADRIWTRLEVGIEIECIR 620
            MIVLDASAL+  L  E G E V       C+S +N +EV+SRF +DG   Q + Q ++ + IE VPF+ ++A+ A+ LL  T   GLSL DRAC+ALA  RG  ALTADR W++++VG+ I  IR
Sbjct:    1 MIVLDASALLTLLYQEPGHEVVSAHFPDCCISTVNLTEVVSRFVRDGHASQPVWQKLKATSIEFVPFSVEQAILASHLLSRTQPYGLSLADRACIALALLRGAPALTADRAWSQVQVGVTICTIR 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12433.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C5XTN0_9GAMM8.620e-3455.20PIN domain-containing protein n=1 Tax=Chromatiales... [more]
A0A1V5L7M6_9ACTN8.620e-3452.80tRNA(fMet)-specific endonuclease VapC n=2 Tax=Acti... [more]
A0A7Z9Y1K2_9CHLR7.850e-3252.00PIN domain-containing protein n=1 Tax=Anaerolineae... [more]
A0A849UZ77_9GAMM3.370e-3050.81Type II toxin-antitoxin system VapC family toxin n... [more]
W0DQ04_9GAMM3.660e-3049.19Twitching motility protein PilT n=3 Tax=Thioalkali... [more]
A0A6P2D1U4_9BACT1.060e-2949.19PINc domain-containing protein n=1 Tax=Gemmata mas... [more]
A0A1R4H2D3_9GAMM4.130e-2948.41PilT protein domain protein n=1 Tax=Crenothrix pol... [more]
A0A7V9FK76_9ACTN1.040e-2850.00Type II toxin-antitoxin system VapC family toxin n... [more]
UPI00053BED021.170e-2851.22type II toxin-antitoxin system VapC family toxin n... [more]
A0A3A0AVQ2_9CHLR2.260e-2848.80PINc domain-containing protein n=1 Tax=Chloroflexi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12433contigP-wetherbeei_contig12433:550..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog713587.THITH_13375
PFAMsPIN
Model size623
Max annot lvl135613|Chromatiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.75e-32
EggNOG OGsCOG4374@1|root,COG4374@2|Bacteria,1N7EF@1224|Proteobacteria,1SCM0@1236|Gammaproteobacteria,1X1SN@135613|Chromatiales
DescriptionPIN domain
Cds size378
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.7045977-UTR-P-wetherbeei_contig12433:549..7941683185948.7045977-UTR-P-wetherbeei_contig12433:549..794Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12433 550..794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.7152238-CDS-P-wetherbeei_contig12433:794..11721683185948.7152238-CDS-P-wetherbeei_contig12433:794..1172Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12433 795..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12433.1.1prot_P-wetherbeei_contig12433.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12433 795..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12433.1.1

>prot_P-wetherbeei_contig12433.1.1 ID=prot_P-wetherbeei_contig12433.1.1|Name=mRNA_P-wetherbeei_contig12433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MIVLDASALIAFLLDEVGKERVRDRLKGSCMSALNYSEVLSRFAKDGVDI
QALGQMIRRSGIEIVPFAAKEALTAAELLISTAHLGLSLGDRACLALAQN
RGLHALTADRIWTRLEVGIEIECIR*
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mRNA from alignment at P-wetherbeei_contig12433:550..1172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12433.1.1 ID=mRNA_P-wetherbeei_contig12433.1.1|Name=mRNA_P-wetherbeei_contig12433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=623bp|location=Sequence derived from alignment at P-wetherbeei_contig12433:550..1172+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTATTCTCAACATTCGGAACCTTCCCGAAGATGTGCACCAAAATTT GAGGCTTCGTGCTGCCAGGTCTGGCCGTAGTATGGAGGCGGAGGCTCGAG CGATCTTGACAGAAGTGTGTGGCATCAAGTCTACCGTTACTCCCGAGTCC CTCCAAGAATTTGTTCTTAGCTTTTATGGTGAGAATCGACCGAGCAACGC AGTCGACGACTTTATTGCGGAGCGACGTAAGCAGGCTGCATTGGAATGAT AGTCCTCGACGCGTCGGCTCTTATCGCTTTCTTGCTTGACGAGGTCGGCA AAGAACGAGTCAGGGACAGGCTCAAAGGCTCTTGTATGTCAGCTCTAAAT TACAGCGAAGTTTTGAGTCGGTTCGCCAAAGACGGAGTCGATATCCAGGC CCTTGGCCAGATGATTCGTCGTAGCGGGATCGAGATCGTTCCTTTCGCCG CTAAGGAAGCACTCACGGCGGCGGAATTGCTCATCTCGACGGCTCACCTC GGACTCTCATTGGGCGACCGGGCCTGTTTGGCTTTGGCGCAAAATCGTGG CCTGCACGCATTGACTGCTGACAGGATTTGGACCCGGCTTGAGGTTGGCA TCGAAATCGAGTGTATCCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12433:550..1172+

>mRNA_P-wetherbeei_contig12433.1.1 ID=mRNA_P-wetherbeei_contig12433.1.1|Name=mRNA_P-wetherbeei_contig12433.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig12433:550..1172+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATAGTCCTCGACGCGTCGGCTCTTATCGCTTTCTTGCTTGACGAGGT
CGGCAAAGAACGAGTCAGGGACAGGCTCAAAGGCTCTTGTATGTCAGCTC
TAAATTACAGCGAAGTTTTGAGTCGGTTCGCCAAAGACGGAGTCGATATC
CAGGCCCTTGGCCAGATGATTCGTCGTAGCGGGATCGAGATCGTTCCTTT
CGCCGCTAAGGAAGCACTCACGGCGGCGGAATTGCTCATCTCGACGGCTC
ACCTCGGACTCTCATTGGGCGACCGGGCCTGTTTGGCTTTGGCGCAAAAT
CGTGGCCTGCACGCATTGACTGCTGACAGGATTTGGACCCGGCTTGAGGT
TGGCATCGAAATCGAGTGTATCCGATGA
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