mRNA_P-wetherbeei_contig12431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12431.1.1
Unique NamemRNA_P-wetherbeei_contig12431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12431contigP-wetherbeei_contig12431:2..934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size933
Hectar predicted targeting categorymitochondrion
Exons1
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.6617503-UTR-P-wetherbeei_contig12431:1..3041683185948.6617503-UTR-P-wetherbeei_contig12431:1..304Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12431 2..304 +
1683185948.6777785-UTR-P-wetherbeei_contig12431:862..9341683185948.6777785-UTR-P-wetherbeei_contig12431:862..934Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12431 863..934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.6700652-CDS-P-wetherbeei_contig12431:304..8621683185948.6700652-CDS-P-wetherbeei_contig12431:304..862Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12431 305..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12431.1.1prot_P-wetherbeei_contig12431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12431 305..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12431.1.1

>prot_P-wetherbeei_contig12431.1.1 ID=prot_P-wetherbeei_contig12431.1.1|Name=mRNA_P-wetherbeei_contig12431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MVRGKQSRRNLFMSGFHLKLQLYFARHKRYFITFRSGAARLLHKLLSLEE
RAAAGCQKMVRRLFIDPSLWVVASAQHVTRLFSLLLHAVRVLCLGCVGGA
KSGGASDQPCSSGNEWEEKPRQQRLRRADSGGSGDLTSVAMIDAVPCWFF
GSRKECERVRDARKKTEEALLSRILFQAYCPGKGS*
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mRNA from alignment at P-wetherbeei_contig12431:2..934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12431.1.1 ID=mRNA_P-wetherbeei_contig12431.1.1|Name=mRNA_P-wetherbeei_contig12431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=933bp|location=Sequence derived from alignment at P-wetherbeei_contig12431:2..934+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTTCCTTGGTTTTCGCGTTGAGCAAGAAGGAACGCAAAAAGAACGGAG
TCGGTGGCACGTGCCCGACTTCGGGCGGCTGAAGCCTGCCGCTTAGTTGA
TCCAGATGCAAGGAGACTCAAGCTCATTTTGCTCCGCTTCTTCTGGAAGC
CTGCTTATTTCCCAAGAATGGTTTCGGCCAGCGGCAGCTGGTCCAACTAA
ACAGTAGTCGCGTTCATAGTGGCGGCGACCGCACAAGGATACTGTGTAAT
TTCCTGCACTCGCTCAACGCCTTCCTGACGGCGAGAACCTGCGCACCTTC
CCGATGGTAAGGGGAAAACAGTCGAGGAGGAACCTGTTCATGTCCGGTTT
CCATTTGAAACTGCAGCTTTATTTCGCGCGACATAAACGGTATTTCATCA
CTTTTCGCTCCGGGGCCGCTCGCCTTCTTCATAAGCTTCTCTCGCTGGAG
GAACGTGCTGCCGCTGGCTGTCAGAAAATGGTGCGCAGACTTTTCATCGA
TCCTTCACTATGGGTAGTCGCTTCCGCGCAACATGTTACTCGCCTTTTTT
CGCTTCTCCTTCACGCCGTTCGCGTCCTCTGTCTCGGTTGTGTCGGCGGA
GCAAAATCGGGCGGCGCGTCCGACCAGCCATGCAGTAGTGGCAATGAATG
GGAGGAGAAACCGCGACAGCAGCGGTTGCGGCGCGCCGATAGTGGCGGTA
GTGGCGATTTAACATCAGTGGCGATGATTGACGCCGTGCCATGCTGGTTT
TTCGGCTCCAGGAAAGAATGCGAGCGAGTGAGGGATGCACGGAAGAAAAC
AGAAGAAGCTCTTCTCTCGCGGATTCTCTTTCAGGCATATTGCCCCGGTA
AGGGGTCGTAGCTCGAATGCTATAAACGGGTTACGGCGGGCAAGGAAAAA
GTTAAATGAACCAGGGGACGCCACGAACACCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12431:2..934+

>mRNA_P-wetherbeei_contig12431.1.1 ID=mRNA_P-wetherbeei_contig12431.1.1|Name=mRNA_P-wetherbeei_contig12431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig12431:2..934+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGGGGAAAACAGTCGAGGAGGAACCTGTTCATGTCCGGTTTCCA
TTTGAAACTGCAGCTTTATTTCGCGCGACATAAACGGTATTTCATCACTT
TTCGCTCCGGGGCCGCTCGCCTTCTTCATAAGCTTCTCTCGCTGGAGGAA
CGTGCTGCCGCTGGCTGTCAGAAAATGGTGCGCAGACTTTTCATCGATCC
TTCACTATGGGTAGTCGCTTCCGCGCAACATGTTACTCGCCTTTTTTCGC
TTCTCCTTCACGCCGTTCGCGTCCTCTGTCTCGGTTGTGTCGGCGGAGCA
AAATCGGGCGGCGCGTCCGACCAGCCATGCAGTAGTGGCAATGAATGGGA
GGAGAAACCGCGACAGCAGCGGTTGCGGCGCGCCGATAGTGGCGGTAGTG
GCGATTTAACATCAGTGGCGATGATTGACGCCGTGCCATGCTGGTTTTTC
GGCTCCAGGAAAGAATGCGAGCGAGTGAGGGATGCACGGAAGAAAACAGA
AGAAGCTCTTCTCTCGCGGATTCTCTTTCAGGCATATTGCCCCGGTAAGG
GGTCGTAG
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