mRNA_P-wetherbeei_contig12427.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12427.1.1
Unique NamemRNA_P-wetherbeei_contig12427.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A6N7IRV3_9FIRM (DUF3854 domain-containing protein n=1 Tax=Desulfofundulus thermobenzoicus TaxID=29376 RepID=A0A6N7IRV3_9FIRM)

HSP 1 Score: 58.5 bits (140), Expect = 3.700e-7
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   SRGG S GTP HVARP E +    RVW+TEGPLKAD+A +HL
Sbjct:  200 GKYRLFSGHQSRGGCSCGTPAHVARPEEVKD--RRVWITEGPLKADVASKHL 249
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: UPI001FADFE4A (toprim domain-containing protein n=1 Tax=Desulfofundulus sp. TPOSR TaxID=2714340 RepID=UPI001FADFE4A)

HSP 1 Score: 55.8 bits (133), Expect = 6.020e-7
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPR--ENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   SRGG S GTP HV RP   E+R    R+W+TEGPLKADIAC++L
Sbjct:    7 GKYKLFSGHKSRGGCSCGTPAHVTRPAKVEDR----RIWITEGPLKADIACKYL 56
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A1M6EUC5_9FIRM (Toprim domain-containing protein n=3 Tax=Eubacteriales TaxID=186802 RepID=A0A1M6EUC5_9FIRM)

HSP 1 Score: 55.8 bits (133), Expect = 3.230e-6
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPR--ENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   SRGG S GTP HV RP   E+R    R+W+TEGPLKADIAC++L
Sbjct:  199 GKYKLFSGHKSRGGCSCGTPAHVTRPAKVEDR----RIWITEGPLKADIACKYL 248
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A494WYP1_9FIRM (DUF3854 domain-containing protein n=1 Tax=Desulfofundulus salinum TaxID=2419843 RepID=A0A494WYP1_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 4.400e-6
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   SRGG S GTP HVARP +      R+W+TEGPLKADIA E+L
Sbjct:  199 GKYKLFSGHKSRGGCSCGTPAHVARPAKTED--RRIWITEGPLKADIAGEYL 248
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A6N8BIQ6_9FIRM (Toprim domain-containing protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8BIQ6_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 4.440e-6
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   +RGG S GTP H+ARP  N+    RVW+TEGPLK+DIA ++L
Sbjct:  201 GKYKLFSGYTNRGGCSCGTPAHIARP--NKTNDSRVWITEGPLKSDIAAKYL 250
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A1B7LFQ4_9FIRM (Topoisomerase n=2 Tax=Desulfotomaculum copahuensis TaxID=1838280 RepID=A0A1B7LFQ4_9FIRM)

HSP 1 Score: 55.1 bits (131), Expect = 6.010e-6
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   +RGG S GTP HVARP E +    RVW+TEGPLKADIA ++L
Sbjct:  201 GKYRLFSGHQNRGGCSCGTPAHVARPAEIKD--RRVWITEGPLKADIASKYL 250
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A6N8B9P9_9FIRM (Toprim domain-containing protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8B9P9_9FIRM)

HSP 1 Score: 55.1 bits (131), Expect = 6.040e-6
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   SRGG S GTP H+ARP + +    R+W+TEGPLKADIA ++L
Sbjct:  201 GKYKLFSGYTSRGGCSCGTPAHIARPDKTKD--TRIWITEGPLKADIAAKYL 250
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A6N7INP2_9FIRM (Ribonuclease n=1 Tax=Desulfofundulus thermobenzoicus TaxID=29376 RepID=A0A6N7INP2_9FIRM)

HSP 1 Score: 54.7 bits (130), Expect = 8.800e-6
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  345 SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            SRGG S GTP HVA P E +    R+W+TEGPLKADIA +HL
Sbjct:  273 SRGGCSCGTPAHVAIPAEIKD--RRIWITEGPLKADIASKHL 312
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A1J5JM83_MOOTH (DUF3854 domain-containing protein n=3 Tax=Moorella TaxID=44260 RepID=A0A1J5JM83_MOOTH)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-5
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:  321 GQIQLSSA--SRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            G+ +L S   S+GG S GTP HVARP E +    RVW+TEGPLKADIA  +L
Sbjct:  199 GKYKLFSGYTSQGGCSCGTPAHVARPAEIKD--RRVWITEGPLKADIAATYL 248
[Close]
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Match: A0A0F2NNR9_9FIRM (DUF3854 domain-containing protein n=1 Tax=Peptococcaceae bacterium BRH_c4a TaxID=1629716 RepID=A0A0F2NNR9_9FIRM)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-5
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 3 
Query:  336 SSASRGGASPGTPIHVARPRENRQGTGRVWLTEGPLKADIACEHL 470
            SS  +GG + GTP HVARP E R     +W+TEGPLKADIA ++L
Sbjct:  210 SSGKKGGGNSGTPAHVARPAEIRDRI--IWITEGPLKADIAAKYL 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6N7IRV3_9FIRM3.700e-759.62DUF3854 domain-containing protein n=1 Tax=Desulfof... [more]
UPI001FADFE4A6.020e-757.41toprim domain-containing protein n=1 Tax=Desulfofu... [more]
A0A1M6EUC5_9FIRM3.230e-657.41Toprim domain-containing protein n=3 Tax=Eubacteri... [more]
A0A494WYP1_9FIRM4.400e-657.69DUF3854 domain-containing protein n=1 Tax=Desulfof... [more]
A0A6N8BIQ6_9FIRM4.440e-653.85Toprim domain-containing protein n=1 Tax=Firmicute... [more]
A0A1B7LFQ4_9FIRM6.010e-657.69Topoisomerase n=2 Tax=Desulfotomaculum copahuensis... [more]
A0A6N8B9P9_9FIRM6.040e-653.85Toprim domain-containing protein n=1 Tax=Firmicute... [more]
A0A6N7INP2_9FIRM8.800e-664.29Ribonuclease n=1 Tax=Desulfofundulus thermobenzoic... [more]
A0A1J5JM83_MOOTH1.110e-557.69DUF3854 domain-containing protein n=3 Tax=Moorella... [more]
A0A0F2NNR9_9FIRM1.120e-557.78DUF3854 domain-containing protein n=1 Tax=Peptococ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12427contigP-wetherbeei_contig12427:1469..1942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size474
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.5198448-CDS-P-wetherbeei_contig12427:1468..19421683185948.5198448-CDS-P-wetherbeei_contig12427:1468..1942Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12427 1469..1942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12427.1.1prot_P-wetherbeei_contig12427.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12427 1469..1942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12427.1.1

>prot_P-wetherbeei_contig12427.1.1 ID=prot_P-wetherbeei_contig12427.1.1|Name=mRNA_P-wetherbeei_contig12427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
VYQHLLGGQLLTTDHRRHLQELRQLSSEAIVARGYASWGSQPRAALARAA
FDLFGAVALDVPGVIVRQQKREYVTLAGSPGLAIPIRNVKSRIVAVQIRP
DQPRPGQGKYNSPPPAAVVPAPAPPSTSPAPAKTAREPAASGSPRVLSKP
ISPASTS*
back to top

mRNA from alignment at P-wetherbeei_contig12427:1469..1942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12427.1.1 ID=mRNA_P-wetherbeei_contig12427.1.1|Name=mRNA_P-wetherbeei_contig12427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig12427:1469..1942+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTATCAGCATCTCCTCGGCGGCCAACTTCTCACCACCGATCACCGGCG
CCACCTCCAGGAGCTCCGCCAGCTCAGCTCCGAGGCTATCGTCGCCCGCG
GCTACGCCAGCTGGGGCAGCCAGCCTCGCGCCGCTCTGGCCCGCGCCGCT
TTTGATCTTTTCGGCGCCGTCGCCCTCGACGTGCCCGGCGTCATCGTACG
CCAGCAAAAACGCGAATATGTCACCCTCGCCGGCTCTCCAGGCCTGGCCA
TCCCCATCCGCAACGTGAAGAGCCGGATCGTCGCAGTCCAGATCCGCCCC
GATCAACCCCGCCCGGGCCAGGGCAAATACAACTCTCCTCCGCCAGCCGC
GGTGGTGCCAGCCCCGGCACCCCCATCCACGTCGCCCGCCCCCGCGAAAA
CCGCCAGGGAACCGGCCGCGTCTGGCTCACCGAGGGTCCTCTCAAAGCCG
ATATCGCCTGCGAGCACCTCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12427:1469..1942+

>mRNA_P-wetherbeei_contig12427.1.1 ID=mRNA_P-wetherbeei_contig12427.1.1|Name=mRNA_P-wetherbeei_contig12427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig12427:1469..1942+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTATCAGCATCTCCTCGGCGGCCAACTTCTCACCACCGATCACCGGCG
CCACCTCCAGGAGCTCCGCCAGCTCAGCTCCGAGGCTATCGTCGCCCGCG
GCTACGCCAGCTGGGGCAGCCAGCCTCGCGCCGCTCTGGCCCGCGCCGCT
TTTGATCTTTTCGGCGCCGTCGCCCTCGACGTGCCCGGCGTCATCGTACG
CCAGCAAAAACGCGAATATGTCACCCTCGCCGGCTCTCCAGGCCTGGCCA
TCCCCATCCGCAACGTGAAGAGCCGGATCGTCGCAGTCCAGATCCGCCCC
GATCAACCCCGCCCGGGCCAGGGCAAATACAACTCTCCTCCGCCAGCCGC
GGTGGTGCCAGCCCCGGCACCCCCATCCACGTCGCCCGCCCCCGCGAAAA
CCGCCAGGGAACCGGCCGCGTCTGGCTCACCGAGGGTCCTCTCAAAGCCG
ATATCGCCTGCGAGCACCTCGTGA
back to top