mRNA_P-wetherbeei_contig12413.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12413.1.1
Unique NamemRNA_P-wetherbeei_contig12413.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A7C4TQU7_9HYPH (Protein translocase subunit SecD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQU7_9HYPH)

HSP 1 Score: 268 bits (685), Expect = 2.930e-83
Identity = 136/271 (50.18%), Postives = 194/271 (71.59%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDI-KGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+FS+ ++ L +L+CL + L A+PNFF KE V  WP F+PK+Q+ALGLDL+GGAHLLLAMDTEALR+ W++ L    R  L     ++ K  FT +G   + V +RL    D +A +RE+RKLN+++GS L+GT +N  ++ KGEG  +T+ PT  G+++RI+ A SAALET+RRRVD +GT+E  IVRQG DRILVQVPG++DT  LK +IG TA L+FH+VH  ++ ++ ++ R  +GY+I+PA EK +     +YLL+  P+V G+D
Sbjct:    1 MLHFSQARMILISLICLVAFLFAMPNFFPKETVERWPNFLPKRQLALGLDLRGGAHLLLAMDTEALRKDWIATLRDDARKQL-----RDAKIPFTAVGTTPTAVQIRLAKPEDADAAVRELRKLNQSLGSLLLGTESNSIEVEKGEGGLLTLQPTPQGLSNRISGAASAALETVRRRVDIIGTTEPLIVRQGSDRILVQVPGFDDTRRLKELIGNTAKLSFHEVHPQMTAEEARATRVPIGYKIYPAAEKNE----AAYLLRETPVVPGDD 262          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A1E4CUJ3_9HYPH (Protein translocase subunit SecD n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CUJ3_9HYPH)

HSP 1 Score: 260 bits (665), Expect = 3.050e-80
Identity = 137/271 (50.55%), Postives = 188/271 (69.37%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDI-KGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+FSRLK+    L CL S+L A+PN F+KEQ+A+WP F+P KQM LGLDL+GGAHLLLAMDTE LR++WL  L    R  L     ++ K   TG+G+ N+ V VRL    + +A +RE+RKL + +GSA++GTS     I KGEG  I +AP   G+  R+  A  AA+ET+ RR+++LGTSE+++VRQG DRILVQ PG  DT  LK ++G+TA L+FH+VH T++ ++ + GR   GYRI+P  E+ D  GA +YLL+  P+V GE+
Sbjct:    1 MLHFSRLKMIAVLLTCLVSILFALPNLFTKEQLASWPRFLPTKQMPLGLDLQGGAHLLLAMDTEELRREWLQTLRDDARRTL-----RDAKIFPTGVGIVNNQVQVRLAKPEEADAAVRELRKLIQPLGSAVLGTSGEDLAITKGEGGTILLAPPPPGLQQRVVHAAGAAIETVNRRINALGTSESTVVRQGADRILVQYPGLTDTKVLKDLLGQTAKLSFHEVHPTMTAEEARQGRIPPGYRIYPGSERGDEQGA-AYLLRETPVVPGEN 265          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A6N6SSQ1_9HYPH (Protein translocase subunit SecD n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SSQ1_9HYPH)

HSP 1 Score: 249 bits (636), Expect = 5.940e-76
Identity = 133/271 (49.08%), Postives = 184/271 (67.90%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK-GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+FS  K     L CL   LL  PNFF+KE V +WP + P+ Q+ LGLDL+GGAHLLL+M+T  +R+ WL  L    R  L     +E K  FTG+G+ N+ V +RL    D +A ++E+R L + +GSAL+GT+    +IK G+G  IT+ PT+AG+  RI +AI AA+ET+RRRVD++GT+E +IVRQGRDRILVQVPG +DTA LK +IG+TA L FH+VH  +S +D +  R   G+RI+PA ++ D    G  LL+  P+VRG++
Sbjct:    1 MLHFSTWKQVAIILTCLIGALLVAPNFFAKETVRSWPAWTPRAQLNLGLDLRGGAHLLLSMETAEVRKDWLDTLRDDARKRL-----REAKIAFTGLGITNNIVQIRLAKPEDADAAMKELRGLAQPMGSALLGTTGMDVEIKKGDGGVITITPTEAGLQQRIGNAIGAAIETVRRRVDAMGTTEPNIVRQGRDRILVQVPGLQDTAQLKELIGKTARLTFHEVHPQMSAEDARQTRVPPGFRIYPATDRED----GPQLLRETPVVRGDE 262          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: UPI0019B92208 (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI0019B92208)

HSP 1 Score: 248 bits (633), Expect = 1.660e-75
Identity = 129/271 (47.60%), Postives = 181/271 (66.79%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ-ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+F R KI    L CL  ++  +PNFFSKE V +WPG++P KQ+ LGLDL+GGAHLLLAMDT+ L + WL+ L    R  L     +E K  FTG+GV  + V V++    DL+     ++KL + IG++++G+  +   +   GT  IT+APT  G+  R++SA SAA+ET+ RRV+++GT+E+++VRQG DRILVQ PG +DT  LK +IG+TA L FH VH  IS ++ +  R  +GY++FP+ E ADR    SY+LQ  PIV GED
Sbjct:    1 MLHFERWKIIAIVLTCLAGVIFTLPNFFSKETVDSWPGWVPHKQLPLGLDLRGGAHLLLAMDTKELEKDWLNTLRDDTRKTL-----REAKIGFTGLGVVGNSVQVKVTKPEDLDKATAALKKLIQPIGNSILGSGGSDLTVDTSGTDTITLAPTQQGMQHRVSSASSAAIETVNRRVNAMGTAESTVVRQGSDRILVQFPGLQDTKQLKDLIGQTAKLTFHAVHPDISAEEAKQTRVPVGYKVFPSVESADR----SYVLQESPIVSGED 262          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2S5PC73_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PC73_HYPSQ)

HSP 1 Score: 248 bits (632), Expect = 2.830e-75
Identity = 136/274 (49.64%), Postives = 178/274 (64.96%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRR-KEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+FSR K+      C+ + L A+PNFF+KE V  WP F+PKKQ+ALGLDL+GGAHLLL MDT  L+  WL  L    R  L E  + +E K  F+   V   GV VR+    D E  LRE+RKL + IG A+ G S N  D+  +GT+   IT+ PT+ G+ +R+T A+SAA+ETI RR++SLGT+EA++VRQGRDRIL+Q PG +DT  LK +IG+TA L FH VH   S ++ +  R   GY+IF  D    RG  G +LLQ  P+V GED
Sbjct:    1 MLHFSRWKVISILAACVMAGLFALPNFFAKETVVGWPSFLPKKQLALGLDLRGGAHLLLGMDTSELKTDWLKALREDTRRTLLELNKGREQKIAFSPATVTGGGVQVRITKPEDAETALRELRKLVQPIGGAVFGGSGNDIDVT-QGTEPGLITLKPTEPGLFNRVTLAMSAAIETINRRINSLGTAEATVVRQGRDRILIQYPGLQDTKELKELIGKTAKLTFHAVHPQTSAEEAKLTRVPNGYKIFAGDR---RGEQGEFLLQEAPVVSGED 270          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: UPI00037BAD8A (protein translocase subunit SecD n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00037BAD8A)

HSP 1 Score: 247 bits (631), Expect = 3.630e-75
Identity = 129/272 (47.43%), Postives = 186/272 (68.38%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK--GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+F R KI      CL  LL A+PNFFSKE VA+WP F+PK+QM LGLDL+GGAHLLLA+D   +R+ WL++L    R  L     +E K  F+ IGV+   V +RL    D E  L+E++KL + IG+A++GTS N  +++   E   I + PT  G+ +R+++A SA++ET+ RRV++LGT+E+++VRQGRDRILVQ PG  DT  LK +IG+TA L+FH VH TI+ ++ ++ R  +GYR++PA E+ + G    Y+L   P+V+G+D
Sbjct:    1 MLHFERWKIFAIVATCLLGLLFALPNFFSKETVASWPSFIPKRQMPLGLDLRGGAHLLLALDQNEIRKDWLANLREDSRKTL-----REAKIGFSAIGVSGDAVQIRLVKPEDTETALKELKKLVQPIGNAILGTSGNDVEVEKGAEPGLILLKPTQFGMQERLSNAASASIETVNRRVNALGTAESTVVRQGRDRILVQYPGLTDTKQLKDLIGKTAKLSFHAVHPTITAEEAKTTRPPMGYRVYPAAER-EAGFEQGYVLAETPVVQGDD 266          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A6I3KDT1_9HYPH (Protein translocase subunit SecD n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KDT1_9HYPH)

HSP 1 Score: 247 bits (630), Expect = 4.430e-75
Identity = 125/270 (46.30%), Postives = 178/270 (65.93%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            ML+F R KI    LVCL  +L  VPNFFSK+ V +WPG++P +Q+ LGLDL+GGAHLLLAMDT+ L + WL+ L    R  L     +E K  FTG+GV  + V V++    +++     ++KL   IG+A++G+  N   +   G  IT+ PT  G+  R++SA SAA+ET+ RRV+++GTSE+++VRQG DRILVQ PG +DT  LK +IG+TA L FH VH  IS ++ +  R+ +GY+++P+ E   R    SY+LQ  P+V GED
Sbjct:    1 MLHFERWKIIAVVLVCLAGVLFTVPNFFSKQTVDSWPGWLPHRQLPLGLDLQGGAHLLLAMDTKELEKDWLTTLRDDTRRQL-----REAKVGFTGLGVVGNSVQVKITKPEEMDKATEAVKKLVTPIGNAILGSGGNDITVASSGDTITVTPTQQGMQHRVSSAASAAIETVNRRVNAMGTSESTVVRQGTDRILVQFPGLQDTKQLKDLIGQTAKLTFHSVHPDISAEEAKQTRTPVGYKVYPSTEADGR----SYVLQETPVVSGED 261          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2W4KS58_9PROT (Protein translocase subunit SecD (Fragment) n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KS58_9PROT)

HSP 1 Score: 238 bits (608), Expect = 3.180e-74
Identity = 128/271 (47.23%), Postives = 182/271 (67.16%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIK--GEGTQITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGE 807
            ML+F   K+    L CL  ++ A+PN FSKE V +WP +MPK+Q++LGLDL+GGAHLLLAMD   +R+ WL  +    R  L + R       FTG+G+  + VVVR+     ++A L+E+R L + IG+ L+G+  +   ++   E   I + PT+AG+  RI++A+ A++ET+RRR+D+LGTSEAS+VRQG DRILVQ PG +DT+ LK +IGETA L+FH+VH +IS Q+ Q  R   GYRI+P+   AD  G   YLL+  P+VRG+
Sbjct:    1 MLHFQTWKVVGVILTCLLGVIFALPNLFSKETVESWPDWMPKRQLSLGLDLRGGAHLLLAMDVNDVRKDWLESIREDARRRLRDAR-----IGFTGLGIQGNSVVVRIAQPDQMDAALKELRGLVQPIGNPLLGSVGDDISVQRGNEPGLIVLQPTEAGMQQRISNAVGASIETVRRRIDTLGTSEASVVRQGSDRILVQFPGLQDTSQLKALIGETARLSFHEVHPSISGQEAQISRPPPGYRIYPS---ADDDGF-VYLLRETPVVRGD 262          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A2S5M4Y5_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5M4Y5_HYPSQ)

HSP 1 Score: 243 bits (621), Expect = 1.040e-73
Identity = 129/273 (47.25%), Postives = 184/273 (67.40%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKADRGGAGSYLLQVDPIVRGED 810
            MLYFSR KI    L CL  L+ A PNF SKE +A+WP F+P K + LGLDL+GGAHLLLAMD + +R+ WL +L    R +L     ++ K  F+G+G+  S + ++L    D  A L E+RKL + +G+A++GTS N  ++  EGT    I M P+DAG+  R+ +A ++++ET+ RR+++LGTSE+++VRQG DRIL+Q PG  DT  LKR+IGETA L FH+VH + S +D +   + +GY+++P D  A  G  G YLL+  PIV+GED
Sbjct:    1 MLYFSRFKIIAILLTCLAGLVAASPNFLSKETLAHWPTFLPSKPLPLGLDLQGGAHLLLAMDQDEIRKDWLDNLRDSARKSL-----RDAKIGFSGLGIQGSQLQIKLAKPEDRAAALTELRKLIQPLGNAVLGTSGNDIEVN-EGTDANTILMKPSDAGMKARVLNAAASSIETVNRRINNLGTSESTVVRQGVDRILIQFPGLSDTKELKRLIGETAKLTFHEVHPSTSVEDAKLTAAPIGYKVYPGD--ASEG--GEYLLRETPIVQGED 263          
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Match: A0A7Y4XIW2_HYPSQ (Protein translocase subunit SecD n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XIW2_HYPSQ)

HSP 1 Score: 243 bits (619), Expect = 2.060e-73
Identity = 128/275 (46.55%), Postives = 191/275 (69.45%), Query Frame = 1
Query:    1 MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLDLKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVANSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQ---ITMAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVPGYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPA--DEKADRGGAGSYLLQVDPIVRGED 810
            ML+FSR+KI    L CL  ++ A+PNFF+K+ VA WP F+P++QM LGLDL+GGAHLLLAMD E +++ W+++L   VR +L     ++ K  F+G+G+  + + VRL    D +A L+E+RKL + IG+A++G+S N  DI  EGT+   I + PTD G+  RI+SA ++++ET+ RR+++LGTSE+S+VRQG DRIL+Q PG ++T+ LK++IGETA L FH+VH + S +D +      GY+I+    DE      +G +LL+  P+V GED
Sbjct:    1 MLHFSRMKILAIVLTCLAGIVFALPNFFAKDVVAKWPSFVPRQQMNLGLDLQGGAHLLLAMDQEEIKKDWVTNLRDSVRRSL-----RDAKIGFSGLGIQGTQLQVRLAKPEDKDAALKELRKLIQPIGNAILGSSGNDLDIS-EGTEPGTINLKPTDQGMKARISSAAASSIETVNRRINNLGTSESSVVRQGTDRILIQFPGLKETSELKKLIGETAKLTFHEVHPSTSAEDAKLTAVPPGYKIYAGTGDE------SGDFLLRETPVVPGED 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12413.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TQU7_9HYPH2.930e-8350.18Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
A0A1E4CUJ3_9HYPH3.050e-8050.55Protein translocase subunit SecD n=2 Tax=unclassif... [more]
A0A6N6SSQ1_9HYPH5.940e-7649.08Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
UPI0019B922081.660e-7547.60Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
A0A2S5PC73_HYPSQ2.830e-7549.64Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
UPI00037BAD8A3.630e-7547.43protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
A0A6I3KDT1_9HYPH4.430e-7546.30Protein translocase subunit SecD n=2 Tax=Hyphomicr... [more]
A0A2W4KS58_9PROT3.180e-7447.23Protein translocase subunit SecD (Fragment) n=2 Ta... [more]
A0A2S5M4Y5_HYPSQ1.040e-7347.25Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]
A0A7Y4XIW2_HYPSQ2.060e-7346.55Protein translocase subunit SecD n=1 Tax=Hyphomicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12413contigP-wetherbeei_contig12413:2..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911260_gene3441
Preferred namesecD
PFAMsSecD_SecF,Sec_GG
Model size810
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03072,ko:K12257
KEGG TC2.A.6.4,3.A.5.2,3.A.5.7
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.95e-76
EggNOG OGsCOG0342@1|root,COG0342@2|Bacteria,1MV5U@1224|Proteobacteria,2TQYG@28211|Alphaproteobacteria,3N696@45401|Hyphomicrobiaceae
DescriptionPart of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Cds size810
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.3645005-CDS-P-wetherbeei_contig12413:1..8111683185948.3645005-CDS-P-wetherbeei_contig12413:1..811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12413 2..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12413.1.1prot_P-wetherbeei_contig12413.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12413 2..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12413.1.1

>prot_P-wetherbeei_contig12413.1.1 ID=prot_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=270bp
MLYFSRLKITLTALVCLGSLLLAVPNFFSKEQVANWPGFMPKKQMALGLD
LKGGAHLLLAMDTEALRQKWLSDLSRQVRGALNEYRRKEPKFQFTGIGVA
NSGVVVRLNNAADLEAGLREIRKLNETIGSALMGTSANRYDIKGEGTQIT
MAPTDAGVNDRITSAISAALETIRRRVDSLGTSEASIVRQGRDRILVQVP
GYEDTATLKRIIGETAVLNFHKVHDTISPQDVQSGRSVLGYRIFPADEKA
DRGGAGSYLLQVDPIVRGED
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mRNA from alignment at P-wetherbeei_contig12413:2..811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12413.1.1 ID=mRNA_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:2..811- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTATTTCTCGCGGTTGAAGATCACGCTGACCGCGCTCGTTTGTCT CGGCAGTCTCCTGTTGGCGGTCCCCAACTTCTTCTCCAAGGAGCAGGTCG CGAACTGGCCCGGCTTCATGCCGAAGAAGCAGATGGCTCTAGGTCTCGAT CTCAAGGGCGGCGCGCACCTTCTGCTGGCGATGGATACCGAAGCATTGCG CCAGAAGTGGCTCAGCGATCTCAGCCGGCAGGTGCGCGGCGCGCTCAACG AGTATCGCAGGAAGGAACCGAAGTTCCAGTTCACCGGGATCGGCGTCGCC AACAGCGGTGTCGTAGTACGGCTGAACAATGCGGCCGATCTCGAAGCCGG GTTGCGCGAGATCCGCAAGCTCAACGAGACCATCGGCAGCGCGCTGATGG GGACGTCCGCCAACCGCTACGACATCAAGGGTGAGGGCACGCAGATCACG ATGGCGCCGACCGACGCCGGTGTGAACGACCGCATCACCAGTGCGATCAG CGCCGCGCTGGAGACGATCCGGCGGCGGGTCGACTCGCTGGGGACGTCGG AAGCCAGCATCGTGCGCCAGGGCCGCGATCGCATCCTCGTACAGGTGCCG GGATATGAAGATACCGCCACGCTGAAGCGCATCATCGGCGAGACGGCGGT GCTCAACTTCCACAAGGTCCACGACACGATCAGCCCGCAGGACGTACAGT CGGGACGTTCGGTCCTGGGCTACCGGATCTTTCCGGCCGATGAGAAGGCC GACCGTGGCGGAGCGGGGTCCTACCTGCTGCAGGTCGATCCGATCGTGCG CGGCGAGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12413:2..811-

>mRNA_P-wetherbeei_contig12413.1.1 ID=mRNA_P-wetherbeei_contig12413.1.1|Name=mRNA_P-wetherbeei_contig12413.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig12413:2..811- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTATTTCTCGCGGTTGAAGATCACGCTGACCGCGCTCGTTTGTCT
CGGCAGTCTCCTGTTGGCGGTCCCCAACTTCTTCTCCAAGGAGCAGGTCG
CGAACTGGCCCGGCTTCATGCCGAAGAAGCAGATGGCTCTAGGTCTCGAT
CTCAAGGGCGGCGCGCACCTTCTGCTGGCGATGGATACCGAAGCATTGCG
CCAGAAGTGGCTCAGCGATCTCAGCCGGCAGGTGCGCGGCGCGCTCAACG
AGTATCGCAGGAAGGAACCGAAGTTCCAGTTCACCGGGATCGGCGTCGCC
AACAGCGGTGTCGTAGTACGGCTGAACAATGCGGCCGATCTCGAAGCCGG
GTTGCGCGAGATCCGCAAGCTCAACGAGACCATCGGCAGCGCGCTGATGG
GGACGTCCGCCAACCGCTACGACATCAAGGGTGAGGGCACGCAGATCACG
ATGGCGCCGACCGACGCCGGTGTGAACGACCGCATCACCAGTGCGATCAG
CGCCGCGCTGGAGACGATCCGGCGGCGGGTCGACTCGCTGGGGACGTCGG
AAGCCAGCATCGTGCGCCAGGGCCGCGATCGCATCCTCGTACAGGTGCCG
GGATATGAAGATACCGCCACGCTGAAGCGCATCATCGGCGAGACGGCGGT
GCTCAACTTCCACAAGGTCCACGACACGATCAGCCCGCAGGACGTACAGT
CGGGACGTTCGGTCCTGGGCTACCGGATCTTTCCGGCCGATGAGAAGGCC
GACCGTGGCGGAGCGGGGTCCTACCTGCTGCAGGTCGATCCGATCGTGCG
CGGCGAGGAT
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