mRNA_P-wetherbeei_contig12410.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12410.1.1
Unique NamemRNA_P-wetherbeei_contig12410.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12410.1.1 vs. uniprot
Match: D8LBT7_ECTSI (RBEL1, Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBT7_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.950e-11
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 LYNYLNVPFLELKRQTLLRQAQRAGEELAAAARELDATLADHDYRKYLSHLQATRANPAAGEEA 192
            LY YLNVPFLELKR++LL+QAQ A E L    +EL   +  H Y  Y+ HL+A+  +P AG  A
Sbjct:  360 LYTYLNVPFLELKRKSLLQQAQMASERLEKEYQELAGFIGGHSYGNYMQHLRASDVDPTAGRSA 423
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BLAST of mRNA_P-wetherbeei_contig12410.1.1 vs. uniprot
Match: A0A6P8ZJA9_THRPL (rab-like protein 6 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZJA9_THRPL)

HSP 1 Score: 48.5 bits (114), Expect = 7.110e-5
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    1 LYNYLNVPFLELKRQTLLRQAQRAGEELAAAARELDATLA--DHDYRKYLSHL-----QATRANPAAGEEA 192
            L+ +LN+PFL+L+R+TLL Q +  G E  A   ELDA  A  D DY ++L +L     Q   +  +AG +A
Sbjct:  228 LHKFLNLPFLQLQRETLLAQLETNGNETTATVAELDAFQAGPDADYNQFLENLVNKRRQVAESTSSAGTQA 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12410.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBT7_ECTSI2.950e-1151.56RBEL1, Ras superfamily GTPase n=2 Tax=Ectocarpus T... [more]
A0A6P8ZJA9_THRPL7.110e-540.85rab-like protein 6 n=1 Tax=Thrips palmi TaxID=1610... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12410contigP-wetherbeei_contig12410:1798..1995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBT7
Preferred nameRABL6
PFAMsRas
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0017076,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons1
Evalue4.83e-12
EggNOG OGsKOG0084@1|root,KOG0084@2759|Eukaryota
DescriptionGTPase activity
Cds size198
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.306997-CDS-P-wetherbeei_contig12410:1797..19951683185948.306997-CDS-P-wetherbeei_contig12410:1797..1995Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12410 1798..1995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12410.1.1prot_P-wetherbeei_contig12410.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12410 1798..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12410.1.1

>prot_P-wetherbeei_contig12410.1.1 ID=prot_P-wetherbeei_contig12410.1.1|Name=mRNA_P-wetherbeei_contig12410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
LYNYLNVPFLELKRQTLLRQAQRAGEELAAAARELDATLADHDYRKYLSH
LQATRANPAAGEEATL
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mRNA from alignment at P-wetherbeei_contig12410:1798..1995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12410.1.1 ID=mRNA_P-wetherbeei_contig12410.1.1|Name=mRNA_P-wetherbeei_contig12410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig12410:1798..1995- (Phaeothamnion wetherbeei SAG_119_79)
CTGTACAACTACCTGAACGTGCCATTTTTGGAGCTGAAGCGGCAGACGCT
GTTGCGACAGGCGCAGCGTGCGGGGGAGGAGCTGGCGGCGGCGGCCCGCG
AACTCGACGCCACGCTGGCTGACCACGACTACCGGAAGTACTTGAGCCAC
CTCCAGGCAACTCGCGCCAACCCCGCCGCGGGTGAGGAAGCAACTCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12410:1798..1995-

>mRNA_P-wetherbeei_contig12410.1.1 ID=mRNA_P-wetherbeei_contig12410.1.1|Name=mRNA_P-wetherbeei_contig12410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig12410:1798..1995- (Phaeothamnion wetherbeei SAG_119_79)
CTGTACAACTACCTGAACGTGCCATTTTTGGAGCTGAAGCGGCAGACGCT
GTTGCGACAGGCGCAGCGTGCGGGGGAGGAGCTGGCGGCGGCGGCCCGCG
AACTCGACGCCACGCTGGCTGACCACGACTACCGGAAGTACTTGAGCCAC
CTCCAGGCAACTCGCGCCAACCCCGCCGCGGGTGAGGAAGCAACTCTT
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