mRNA_P-wetherbeei_contig124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig124.1.1
Unique NamemRNA_P-wetherbeei_contig124.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A835ZDT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.770e-15
Identity = 63/160 (39.38%), Postives = 72/160 (45.00%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDW--TKDR---KAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQRLDFVERSLFLWIR-GRWLYAHGDVGFEPTVTAVPGGVLD 1281
            +RYSAYAYRL DYIM TTH  + D+   KD+   KAW+QSL  F D Y F GL     QP A   ++ G+                                    A L F AK+ A  QRL FVERS FL    GRWLY  GD  F P V    G   D
Sbjct:   58 SRYSAYAYRLPDYIMATTHPDHEDYKPAKDKAGAKAWQQSLLNFCDAYTFQGL-----QPGALELEDDGA-----------------------------------VAFLNFTAKVNALSQRLQFVERSKFLCGGDGRWLYVSGDADFTPEVLLESGQFAD 177          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A1P8KQL6_9PROT (Uncharacterized protein n=1 Tax=Poseidonibacter parvus TaxID=1850254 RepID=A0A1P8KQL6_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 4.510e-11
Identity = 42/137 (30.66%), Postives = 63/137 (45.99%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQRLDFVERSLFLWIRGRWLYAHG 1230
            +R+ A+A + A+YI++TTH+SNSD+T D KAWR+ ++ F D  +F  LDIL +                                            G D + ++F+A L   GQ   F E+S FL +  RW+Y  G
Sbjct:   39 SRFCAFALKKAEYIINTTHKSNSDFTDDLKAWREDIELFCDNTKFISLDILEE------------------------------------------INGLDESFVSFKATLLQNGQDASFKEKSRFLKVENRWVYVDG 133          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A7S0HEU9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEU9_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 5.930e-11
Identity = 51/149 (34.23%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  823 RYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPG--QRLDFVERS-LFLWIRGRWLYAHGDVGFEPTVTA 1260
            RY+AYAYRL D+++DTT   + +W  DR AW++ L  F D +  +GL++   Q                          AGD  +           GAD   + FRAKL   G  + LD +E S L     G WLYA GDV +E T  A
Sbjct:  153 RYTAYAYRLPDFLIDTTSPDHEEWETDRTAWKKDLLTFCDTFVCEGLEVGQQQ--------------------------AGDAAA---------VGGADAVQVPFRAKLVQKGAIKMLDLLETSTLVRGAAGGWLYAKGDVEYEATPEA 266          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A7S1H271_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H271_HEMAN)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-10
Identity = 48/151 (31.79%), Postives = 72/151 (47.68%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHL--TFRAKLGAPGQR----LDFVERSLFLWIRGRWLYAHGDVGFEPTV 1254
            +RYSAYAYRL D+++ TTH++N DW  D+ +WR+ L  F D +EF GL++L +    + K+                       ++            +   H+  TF +K+ +  Q      DF ERS FL     W+Y  GDV F+P V
Sbjct:   91 SRYSAYAYRLPDWVIGTTHKTNVDWRADQTSWRRELLGFCDGFEFLGLEVLEEDAGESDKEYF---------------------ITFLAKLRTLKQPTSTSKHVKQTF-SKIKSQHQNDALNADFKERSRFLLEDEGWMYVEGDVNFDPQV 219          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A7S0VZB7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VZB7_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 3.790e-8
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQ 981
            +RYSAYAYRL D+++ TTH  N D+  D+ AWR+ L  F D ++F GL++L ++
Sbjct:   24 SRYSAYAYRLPDWVIGTTHNDNVDYRADKAAWRRELLGFCDGFDFLGLEVLEEE 77          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A2N6G509_9PROT (Uncharacterized protein n=1 Tax=Arcobacter sp. TaxID=1872629 RepID=A0A2N6G509_9PROT)

HSP 1 Score: 62.0 bits (149), Expect = 7.960e-8
Identity = 36/138 (26.09%), Postives = 60/138 (43.48%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQRLDFVERSLFLWIRGRWLYAHGD 1233
            +R++A+     DYI++TTHE N ++++D+  WR+ ++   +  +F+ L+I+                                              G D A++TFR  L   G  + F ERS FL I G+WLY  G+
Sbjct:   39 SRFTAFVVGNIDYIINTTHEDNIEYSRDKSKWREDIEDVVNSTDFNTLEIIE------------------------------------------FVDGVDEAYVTFRLGLKQKGLDVSFTERSKFLKIDGKWLYRSGE 134          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A7S3BIJ8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BIJ8_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.790e-7
Identity = 42/143 (29.37%), Postives = 59/143 (41.26%), Query Frame = 1
Query:  823 RYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQR--LDFVERSLFLWIRGRWLYAHGDVGFE 1245
            RY+A+ YRL D++M TT    S+W  D  AW++S+  F D  +F  L ++ +Q  +A                                         D A + FRA     G    +D VERS F+   G WLYA G V +E
Sbjct:   27 RYTAFCYRLPDFLMSTTDPEGSEWQPDGAAWKKSMLGFMDNLDFQKLRVVDEQLGSAP----------------------------------------DEASVHFRATFVQKGSINIVDAVERSQFVRRDGHWLYASGVVEYE 129          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A2G1DHE5_9PROT (Uncharacterized protein n=3 Tax=Arcobacteraceae TaxID=2808963 RepID=A0A2G1DHE5_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 2.620e-7
Identity = 38/137 (27.74%), Postives = 58/137 (42.34%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQRLDFVERSLFLWIRGRWLYAHG 1230
            +R+SAYA   A+YI++TTH+ N ++T +R+ W   +  F +  +F GL IL        KD                                    G   + ++F+AKL   G    F E+S FL + G+W Y  G
Sbjct:   39 SRFSAYALGYANYIIETTHKDNCEFTHNRQTWLSDINNFCEYTDFQGLTILD------FKD------------------------------------GNKESFVSFKAKLSQNGLDASFTEKSRFLKVDGKWYYIDG 133          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: L1IZC6_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IZC6_GUITC)

HSP 1 Score: 62.8 bits (151), Expect = 2.660e-7
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQ 981
            +RYSAYAYRL  +IMD+TH +N DW   R  WR  L  F D ++F  L+IL ++
Sbjct:  114 SRYSAYAYRLPTWIMDSTHSTNPDWRSQRNKWRNELLGFCDGFDFVRLEILKEE 167          
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Match: A0A4V1LQU6_9PROT (Uncharacterized protein n=2 Tax=Halarcobacter ebronensis TaxID=1462615 RepID=A0A4V1LQU6_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 2.680e-7
Identity = 38/138 (27.54%), Postives = 57/138 (41.30%), Query Frame = 1
Query:  820 NRYSAYAYRLADYIMDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESGSGGNDGGAARGSSDAGAGDGVSGXXXXXXXXXXGADRAHLTFRAKLGAPGQRLDFVERSLFLWIRGRWLYAHGD 1233
            +RYSAYA   +DYI++TTH  N D+T D  +W++ +  F +  EF GL+IL                                              G + A +TF+A L        F+E+S F+ +   WLY  G+
Sbjct:   39 SRYSAYAASNSDYIINTTHRDNKDYTTDINSWKKQIHDFFNHTEFKGLEILE------------------------------------------FIDGDNEAFVTFKAVLFQGAIDTSFIEKSKFVKVNNMWLYHSGE 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835ZDT4_9STRA2.770e-1539.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1P8KQL6_9PROT4.510e-1130.66Uncharacterized protein n=1 Tax=Poseidonibacter pa... [more]
A0A7S0HEU9_9EUKA5.930e-1134.23Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1H271_HEMAN2.030e-1031.79Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VZB7_9CRYP3.790e-848.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A2N6G509_9PROT7.960e-826.09Uncharacterized protein n=1 Tax=Arcobacter sp. Tax... [more]
A0A7S3BIJ8_9EUKA1.790e-729.37Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A2G1DHE5_9PROT2.620e-727.74Uncharacterized protein n=3 Tax=Arcobacteraceae Ta... [more]
L1IZC6_GUITC2.660e-750.00Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A4V1LQU6_9PROT2.680e-727.54Uncharacterized protein n=2 Tax=Halarcobacter ebro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig124contigP-wetherbeei_contig124:1238..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog130081.XP_005706435.1
PFAMsSEC-C
Model size1990
Max annot lvl2759|Eukaryota
KEGG koko:K09858
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.41e-10
EggNOG OGsCOG3012@1|root,2S4BV@2759|Eukaryota
Cds size507
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.7599103-UTR-P-wetherbeei_contig124:1237..18591683185947.7599103-UTR-P-wetherbeei_contig124:1237..1859Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig124 1238..1859 -
1683185947.7861378-UTR-P-wetherbeei_contig124:2647..35081683185947.7861378-UTR-P-wetherbeei_contig124:2647..3508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig124 2648..3508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.7689898-CDS-P-wetherbeei_contig124:1859..22771683185947.7689898-CDS-P-wetherbeei_contig124:1859..2277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig124 1860..2277 -
1683185947.7772455-CDS-P-wetherbeei_contig124:2558..26471683185947.7772455-CDS-P-wetherbeei_contig124:2558..2647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig124 2559..2647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig124.1.1prot_P-wetherbeei_contig124.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig124 1860..2647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig124.1.1

>prot_P-wetherbeei_contig124.1.1 ID=prot_P-wetherbeei_contig124.1.1|Name=mRNA_P-wetherbeei_contig124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MDTTHESNSDWTKDRKAWRQSLQRFSDIYEFDGLDILPDQPPAATKDESG
SGGNDGGAARGSSDAGAGDGVSGASGASEGGAGGADRAHLTFRAKLGAPG
QRLDFVERSLFLWIRGRWLYAHGDVGFEPTVTAVPGGVLDVTASETSVGT
AGETAVRTAVTDEAGGER*
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mRNA from alignment at P-wetherbeei_contig124:1238..3508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig124.1.1 ID=mRNA_P-wetherbeei_contig124.1.1|Name=mRNA_P-wetherbeei_contig124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2271bp|location=Sequence derived from alignment at P-wetherbeei_contig124:1238..3508- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGCAAGCCGTTGCACGACGGCAAACCAGCTCCTGATCCTCTGGCGC TCTTGCGATCAAGGTGCGGTTGTGGATTCGGGACAGGATTGACGATTGTG ATTCACTTTCAGATCGAAGGCCCTATTGCACTCTTTTTATCTCTCTCTTT CCCCTTGTTTGAGTTGCAAATTGTATCTCTTATTCTTACAGCTAGTGGCG GCTGGCCGTGTCCAATGCCGGATATATCAGTACAGTGAGAGATTAGGTTT TCTGTCCTCTCAAAAGGCTGACGTCCTGTTCTTCGTCCTCCCAGCAGTCC CCTTTCTTCAATCGGGTTTCTCGGGTTGAAAGTTTCCGAATGCGCTGCCG ACGCCTCGCTGCCTGCGCTATGCGGCCATAGCCTGTTTCTCTCATGTCAT CAGACCCTCATCTGGACTCGATACATTGTGCCTTTTTGACCCCTACCATC CGGCGTTGCCGCGCCGCCGCCGCCGTTGCCTCCCGCGGCAGCTCCTCGAT GTCGTCCCCCACTGCAATTCCCCTCCGCTGCTTCCTTCATGCGACGCTGC AACCGTCCGCCGTTCTGGACTGCTGCTGTCATTTTCTGGACCGCCGGCTG TCCTGCTGCCGATTCGTTCCCGTCCCGTCCTCTGTGCGGCGCTGCCACTA TCTATTCTGATCCCGTCCCATTCCATGTCGTCCCGTTACCGGTCCCGCGG TCGGCCCCGCTGCCGACATCGCTGCCGATCCCGCTGGTGATCCCACTCCG GGATCTGCCGCCGTTCGCTCTATCTTCCCTGCCGTGCCGTATGATTGACC AAACAAATGGTGTCAAAATAACAGGTACAGCGCCTACGCGTACCGTCTGG CGGACTACATAATGGACACGACGCACGAGAGCAACTCGGACTGGACGAAG GACCGCAAGGCGTGGCGGCAGAGCCTACAGCGCTTCTCCGACATTTACGA GTGAGTCGCCGCGCGTTTATTTTCCGCCCGTGGCTGTCTCTCCGTTCTCT CGCTGACACATTTGTCTGGTTGCTTTGTCGATTCTTTCATCTTGTACGTT CATTTCCTTCCTTTAAAAGCGAGTAATGACGACTTTTCCAAAATAAAGGC GCGTTTCCGATAGATTCCCTGCTACTGTAGGGGTCCTCTTATGCCCCAAA ACCTTGCCCGGCTGGATTTTGCCGTTTCCCCTGCCGCTGTCGCCACCGCC GCAATCTCCTGGTGTCGCCGATCTGATGCAGGTTCGACGGTTTGGACATT CTTCCAGACCAGCCGCCAGCTGCAACCAAAGACGAAAGCGGCAGCGGTGG CAACGATGGCGGTGCCGCAAGGGGAAGCAGTGACGCTGGCGCTGGAGACG GAGTCAGTGGCGCCAGCGGCGCCAGCGAAGGCGGCGCCGGTGGCGCCGAC CGCGCCCACCTAACTTTTCGGGCCAAGCTGGGGGCACCGGGGCAGCGGCT GGATTTCGTGGAGCGAAGCCTCTTCCTGTGGATCCGCGGCCGCTGGCTGT ATGCTCACGGAGACGTTGGCTTTGAGCCGACGGTGACCGCGGTGCCCGGA GGCGTCCTTGACGTCACCGCCAGCGAAACCTCCGTCGGAACCGCCGGTGA AACCGCTGTCCGAACTGCAGTGACAGACGAGGCAGGAGGCGAGCGCTAAG GCGCGGCCGGAGCTGGCGGCGACGACATCAAATTTGGATGCGACGGGGGC AACATTGCAAGTGGCTGAAACCGGCGAAGGGGGCTTGTAACGGCGGCGCA GCGGCGGCGAGAATGCAGCGGGCGGCATTTGTGGTGGTCTCAGCAGCGAA AAGATACCGGCGGAAGCAAGACACGGCACGTTAGGTACGTTCTGTGACAG CGACGGAAAGCGGGGACGGATAGTAGCGGTAAAGGGCTCGCTTGTTTCGT CTCAAGAAATTATGAAAGGGTTGGAGCCTCATCATCAAACACAACCAGGA AAAGAACCCGCACAAGACAGAGGGCATTTCGTTGTAAATAGAGAAGCGCC ACTTGATAAAAAGAGCCTTAAAGCTACGAGGTAAAAGACTTCACGTCTTC CAGATGGGCACCTTGCGCCAGGTTTGAGTTCCGCAGTGGCCGGCTGCACG CTGCATGCCACAAAGGACGGCGCGGTGCGGTGCGGGAGGCGGCTCCCTCC CTTTTTAATACGGAACTGCGGGACTGTGTTTGCGTTTCGGGGTTGTCCTG CCAAAGAAAGACAACGCAAAGGGCTCAATCAACAGCATCAATGAGTATAA TCAATTCAATCAATTGCATCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig124:1238..3508-

>mRNA_P-wetherbeei_contig124.1.1 ID=mRNA_P-wetherbeei_contig124.1.1|Name=mRNA_P-wetherbeei_contig124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig124:1238..3508- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACACGACGCACGAGAGCAACTCGGACTGGACGAAGGACCGCAAGGC
GTGGCGGCAGAGCCTACAGCGCTTCTCCGACATTTACGAGTTCGACGGTT
TGGACATTCTTCCAGACCAGCCGCCAGCTGCAACCAAAGACGAAAGCGGC
AGCGGTGGCAACGATGGCGGTGCCGCAAGGGGAAGCAGTGACGCTGGCGC
TGGAGACGGAGTCAGTGGCGCCAGCGGCGCCAGCGAAGGCGGCGCCGGTG
GCGCCGACCGCGCCCACCTAACTTTTCGGGCCAAGCTGGGGGCACCGGGG
CAGCGGCTGGATTTCGTGGAGCGAAGCCTCTTCCTGTGGATCCGCGGCCG
CTGGCTGTATGCTCACGGAGACGTTGGCTTTGAGCCGACGGTGACCGCGG
TGCCCGGAGGCGTCCTTGACGTCACCGCCAGCGAAACCTCCGTCGGAACC
GCCGGTGAAACCGCTGTCCGAACTGCAGTGACAGACGAGGCAGGAGGCGA
GCGCTAA
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