mRNA_P-wetherbeei_contig12388.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA) HSP 1 Score: 101 bits (251), Expect = 9.180e-23 Identity = 69/156 (44.23%), Postives = 77/156 (49.36%), Query Frame = 1
Query: 22 LVVVARKYCASGNAFCEHGRELGSALMNLQ--------------------QQGGDGPGQYLRLGDLAPA---------------------------------------LVRFGSTVEEIQNYMEALLLSLETTFSAPMEEFVKREVKFVRKMKAEV 312
LV +AR YC +GNAFCEHGREL SALM+LQ + RLGDLA + LVRFG T++EIQNYME LLLS+ETTFSAPMEEFVKREVK V KMK EV
Sbjct: 311 LVNIARAYCKAGNAFCEHGRELSSALMHLQFHREVAXXXXXXXXXXXXXXXXXXXAESWFTRLGDLASSFLSLGYMLGLPYPKLTCARSMPLPQXXXXXXXXXXXXXXLVRFGETLDEIQNYMENLLLSMETTFSAPMEEFVKREVKSVFKMKQEV 466
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.340e-22 Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 1 LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQ-----------------------QGGDGPGQYLRLGDLAPALVRFGSTVEEIQNYMEALLLSLETTFSAPMEEFVKREVKFVRKMK 303
+R HLQ+LV + +KY +G AF GR S LM+LQ+ Q G G + RLGDLAPALVRFG T++E+Q+Y +A+L SLE+TF APM EFVKRE+K V+ +K
Sbjct: 325 MRKHLQRLVDIVQKYIEAGVAFSAVGRIFASELMHLQEGKASGKSGTGXXXXXXXXXXGLSQQGGGESWFSRLGDLAPALVRFGETIDEVQSYNDAVLFSLESTFLAPMREFVKRELKEVKSLK 448
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: A0A7R9YAC1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC1_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.040e-21 Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 1 LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQQGGDGPGQYLRLGDLAPALVRFGSTVEEIQNYMEALLLSLETTFSAPMEEFVKREVKFVRKMKAE 309
LR LQ+LV AR Y +GN + GR + L++L + G +R+GDL P L G TVEEIQ+Y + L+SLETTF APME FVKRE+K VR+MK E
Sbjct: 178 LRERLQRLVKCARDYVRAGNEYSRLGRLFAAELVDLHFRNGPKSASAVRVGDLGPVLAELGKTVEEIQSYRDTFLVSLETTFCAPMEAFVKREIKGVRQMKVE 280
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 2.780e-21 Identity = 58/105 (55.24%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 1 LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQQGGDGPGQYLRLGDLAPALVRFGSTVEEIQNYMEALLLS-LETTFSAPMEEFVKREVKFVRKMKAEV 312
LR LQQLV VARKYC +G AFCEHGREL LMN + G + RLG LAPAL G + +IQ + E +LL LE F PME+FVK EVK +RKMK E+
Sbjct: 24 LRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPR-----GESWFTRLGALAPALEELGRVLGDIQGFQEDVLLRPLENAFY-PMEDFVKGEVKTIRKMKQEM 122
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: D7G5U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U9_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 3.510e-20 Identity = 55/102 (53.92%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 1 LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQQGGDGPGQYLRLGDLAPALVRFGSTVEEIQNYMEALLLS-LETTFSAPMEEFVKREVKFVRKMK 303
LR LQQLV VARKYC +G AFCEHGREL LMN + G + RLG LAPAL G + +IQ + E +LL LE F PME+FVK EVK +RK++
Sbjct: 310 LRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPR-----GESWFTRLGALAPALEELGRVLGDIQGFQEDILLRPLENAFY-PMEDFVKGEVKTIRKVR 405
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Match: A0A7S1U8B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8B4_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.270e-18 Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 1 LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQQGGDGPGQYLRLGDLAPALVRFGSTVEEIQNYMEALLLSLETTFSAPMEEFVKREVKFVRKMKAE 309
LR+ L LV ARKY +GN + GR+ + L++L +G + +GDL PAL G T+ EIQ+Y +ALL S ETTF AP+E FV+REVK V ++KAE
Sbjct: 116 LRSRLSSLVSKARKYVDAGNQYSNLGRKFAADLLDLHDT--EGKKSAVNVGDLGPALAELGRTILEIQSYRDALLGSFETTFCAPLEFFVRREVKGVNRLKAE 216 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12388.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12388.2.1 >prot_P-wetherbeei_contig12388.2.1 ID=prot_P-wetherbeei_contig12388.2.1|Name=mRNA_P-wetherbeei_contig12388.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp LRTHLQQLVVVARKYCASGNAFCEHGRELGSALMNLQQQGGDGPGQYLRLback to top mRNA from alignment at P-wetherbeei_contig12388:1052..1478+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12388.2.1 ID=mRNA_P-wetherbeei_contig12388.2.1|Name=mRNA_P-wetherbeei_contig12388.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=427bp|location=Sequence derived from alignment at P-wetherbeei_contig12388:1052..1478+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12388:1052..1478+ >mRNA_P-wetherbeei_contig12388.2.1 ID=mRNA_P-wetherbeei_contig12388.2.1|Name=mRNA_P-wetherbeei_contig12388.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig12388:1052..1478+ (Phaeothamnion wetherbeei SAG_119_79)back to top |