mRNA_P-wetherbeei_contig12381.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12381.1.1
Unique NamemRNA_P-wetherbeei_contig12381.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12381.1.1 vs. uniprot
Match: A0A836CGX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.470e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    4 YDTPGAYLGMAECGADTLDTALWAVD--SDVPLDCSDIPTCSMTC-GPNEELLLASARNCGCMAEWWVHSNWLRLALAAAVFILMNVSRLFLVRG 279
            Y   G      +C  D    A WA +  +   +DCS +P C++TC GPN+ELL  + ++ GCM EW +HS WLRL+L   VF+LMN+SRL LVRG
Sbjct: 1183 YPPVGPLANNTDCDDDD---AAWAAELNAGAVIDCSAMPACAITCPGPNKELLSEATQHAGCMLEWCLHSAWLRLSLTLLVFVLMNLSRLMLVRG 1274
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BLAST of mRNA_P-wetherbeei_contig12381.1.1 vs. uniprot
Match: A0A8J2SDG6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDG6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.560e-12
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   70 WAVDSDVPLDCSDIPTCSMTCG-PNEELLLASARNCGCMAEWWVHSNWLRLALAAAVFILMNVSRLFLVRGL 282
            WA+DS+ P DC  +P C +TCG P+ ++L  ++++C C AEWW+H+  LRL  A  +F+++ +SR ++V GL
Sbjct:  705 WALDSN-PFDCGSLPMCDITCGGPSVQVLRTASQHCACSAEWWLHATILRLGAAFVIFLVLQLSRSWIVDGL 775
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12381.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CGX6_9STRA7.470e-1746.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SDG6_9STRA1.560e-1243.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12381contigP-wetherbeei_contig12381:1403..2000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FM39
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.96e-19
EggNOG OGs2CYDV@1|root,2S3SR@2759|Eukaryota
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.1696224-UTR-P-wetherbeei_contig12381:1402..14321683185947.1696224-UTR-P-wetherbeei_contig12381:1402..1432Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12381 1403..1432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.1782644-CDS-P-wetherbeei_contig12381:1432..15461683185947.1782644-CDS-P-wetherbeei_contig12381:1432..1546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12381 1433..1546 +
1683185947.185271-CDS-P-wetherbeei_contig12381:1862..20001683185947.185271-CDS-P-wetherbeei_contig12381:1862..2000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12381 1863..2000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12381.1.1prot_P-wetherbeei_contig12381.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12381 1433..2000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12381.1.1

>prot_P-wetherbeei_contig12381.1.1 ID=prot_P-wetherbeei_contig12381.1.1|Name=mRNA_P-wetherbeei_contig12381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
MAECGADTLDTALWAVDSDVPLDCSDIPTCSMTCGPNEELLLASARNCGC
MAEWWVHSNWLRLALAAAVFILMNVSRLFLVRGL
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mRNA from alignment at P-wetherbeei_contig12381:1403..2000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12381.1.1 ID=mRNA_P-wetherbeei_contig12381.1.1|Name=mRNA_P-wetherbeei_contig12381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=598bp|location=Sequence derived from alignment at P-wetherbeei_contig12381:1403..2000+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTACGATACTCCGGGCGCGTACCTGGGGATGGCCGAGTGTGGAGCCGA
CACGCTGGACACTGCGCTGTGGGCGGTCGATTCAGACGTGCCGCTCGACT
GCAGCGACATCCCTACTTGCTCCATGACATGCGGCCCCAACGAGGTGTCG
CCCGGAGGGTTGGCTTGCTGGAGAATTGACTGGCTGACCGGGGAGAGCAG
CAGGGGGTAAACGTGGATAGCGGACTCACTGGAGAGAGGCATGCAGGTGT
GGAGTAGTAGTGGCGGGCTCCGTGAGTTGCAGAGGTACACGCGATAGCGG
CGGCAACCGTGGCCGAGGCAACGATGGCGGCAGCTGACAGTAACAGCAGC
GACAAGACCAATGGTAGCAACGGCGGCTGTAGGACAAGTTCGGCGTCAGC
AGCACCCACGAACGTTGTCGTCGCCTTCATTTTGCTCATTGCTTCCTACC
CGTTCCGCAGGAGCTCTTGCTGGCGAGCGCCCGCAACTGCGGCTGCATGG
CGGAGTGGTGGGTGCACTCCAACTGGCTGCGCCTTGCGCTCGCCGCAGCC
GTCTTCATCCTCATGAACGTCTCACGGCTCTTCCTCGTGCGCGGGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12381:1403..2000+

>mRNA_P-wetherbeei_contig12381.1.1 ID=mRNA_P-wetherbeei_contig12381.1.1|Name=mRNA_P-wetherbeei_contig12381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig12381:1403..2000+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAGTGTGGAGCCGACACGCTGGACACTGCGCTGTGGGCGGTCGA
TTCAGACGTGCCGCTCGACTGCAGCGACATCCCTACTTGCTCCATGACAT
GCGGCCCCAACGAGGAGCTCTTGCTGGCGAGCGCCCGCAACTGCGGCTGC
ATGGCGGAGTGGTGGGTGCACTCCAACTGGCTGCGCCTTGCGCTCGCCGC
AGCCGTCTTCATCCTCATGAACGTCTCACGGCTCTTCCTCGTGCGCGGGC
TT
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