mRNA_P-wetherbeei_contig12380.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12380.1.1
Unique NamemRNA_P-wetherbeei_contig12380.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12380.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12380contigP-wetherbeei_contig12380:1438..1710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI42682
Model size273
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.82e-05
EggNOG OGs2EGZX@1|root,2SMTF@2759|Eukaryota,3Q7VN@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008980.1
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.1369042-UTR-P-wetherbeei_contig12380:1437..14401683185947.1369042-UTR-P-wetherbeei_contig12380:1437..1440Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12380 1438..1440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185947.1449308-CDS-P-wetherbeei_contig12380:1440..17101683185947.1449308-CDS-P-wetherbeei_contig12380:1440..1710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12380 1441..1710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12380.1.1prot_P-wetherbeei_contig12380.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12380 1441..1710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12380.1.1

>prot_P-wetherbeei_contig12380.1.1 ID=prot_P-wetherbeei_contig12380.1.1|Name=mRNA_P-wetherbeei_contig12380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MMVSSKLPVTRAGLKAPPWPASNRLADLVEATRRAITEPWVLRRSLVAEL
AKSHALLEYDAADYGSVFVLLRAVRGGKAFVRILRVELKF
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mRNA from alignment at P-wetherbeei_contig12380:1438..1710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12380.1.1 ID=mRNA_P-wetherbeei_contig12380.1.1|Name=mRNA_P-wetherbeei_contig12380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig12380:1438..1710+ (Phaeothamnion wetherbeei SAG_119_79)
CGAATGATGGTGTCGTCGAAGCTCCCGGTGACGCGGGCGGGCCTTAAGGC
GCCGCCGTGGCCGGCATCCAACCGCCTGGCAGACCTGGTGGAGGCGACGC
GTCGAGCAATAACGGAGCCGTGGGTGCTCCGGCGTAGTCTCGTGGCTGAG
CTCGCCAAGAGCCACGCGCTGCTCGAGTACGACGCCGCCGACTACGGCAG
CGTCTTTGTGCTGCTGCGGGCCGTCCGTGGCGGCAAGGCGTTTGTAAGAA
TCCTGCGGGTGGAGCTGAAATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12380:1438..1710+

>mRNA_P-wetherbeei_contig12380.1.1 ID=mRNA_P-wetherbeei_contig12380.1.1|Name=mRNA_P-wetherbeei_contig12380.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig12380:1438..1710+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGTGTCGTCGAAGCTCCCGGTGACGCGGGCGGGCCTTAAGGCGCC
GCCGTGGCCGGCATCCAACCGCCTGGCAGACCTGGTGGAGGCGACGCGTC
GAGCAATAACGGAGCCGTGGGTGCTCCGGCGTAGTCTCGTGGCTGAGCTC
GCCAAGAGCCACGCGCTGCTCGAGTACGACGCCGCCGACTACGGCAGCGT
CTTTGTGCTGCTGCGGGCCGTCCGTGGCGGCAAGGCGTTTGTAAGAATCC
TGCGGGTGGAGCTGAAATTT
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