mRNA_P-wetherbeei_contig12359.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12359.2.1
Unique NamemRNA_P-wetherbeei_contig12359.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A3C1L6J6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L6J6_9ACTN)

HSP 1 Score: 108 bits (270), Expect = 2.500e-27
Identity = 73/152 (48.03%), Postives = 97/152 (63.82%), Query Frame = 1
Query:   28 PVDRPLIERLIDLALFLPAGVAAQIRDDLPGLVRKG----REQVQVARFFGEMAVTFGRNELIKRLEEA---QAAAAIVVADTIPEAAPLVIVA--MPPVP-FDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGS 453
            P  RPL  +++DL ++ P G+A ++  DLPG V  G    +++VQVAR+ GEMAVTFGR+E+ +RL  A   ++   IV       AAPL +V+   P  P F+GY+ L AA +VQ L RL    L  +RDYETA R RRTI+AKL QLLGS
Sbjct:    2 PDQRPLAAKVLDLVVYAPVGLAVRLSSDLPGRVAGGCARVQQRVQVARWVGEMAVTFGRSEVERRLTTAAEHRSLQPIV-------AAPLAMVSAHQPSAPPFEGYEHLAAAQIVQLLGRLPHAELVLIRDYETAHRRRRTILAKLTQLLGS 146          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A3C2B072_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B072_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 9.900e-23
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query:   46 IERLIDLALFLPAGVAAQIRDDLPGLVRKGREQVQ----VARFFGEMAVTFGRNELIKRLEEAQAAAAIVVADTIPEAAPLVIVAMPPVPFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGS 453
            I RL++  ++ P G+A Q+RDD+P +V KGR +V+    VAR+ GEM V +G+  + +RL           A   P AAP+     P  PF GY  L AA +V  L ++    L  VRDYE ATR RRT++A++D LLG+
Sbjct:    6 ISRLLEALVYAPVGLAVQLRDDVPAMVAKGRAEVENRIRVARWVGEMTVQYGKQAIEQRLAPHSPQPVASEAPAAPPAAPV-----PAEPFHGYAALSAAEIVPMLAQVPHAELHLVRDYEAATRARRTVLARVDALLGA 140          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A6I3EXV3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EXV3_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 1.810e-17
Identity = 58/157 (36.94%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   34 DRPLIERLIDLALFLPAGVAAQIRDDLP----GLVRKGREQVQVARFFGEMAVTFGRNELIKRLEEAQAAAAIV--------------VADTIPEAAPLVIVAMPPVPFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLG 450
             RP++E++++L + +PAG+ ++   DLP    G+  +   +V+VA + GEMAVT GR EL +R        A                 A T+P A+    V+ PP  F+GYD L AA +VQ L RL    L  + DYE A R+RRTI+ ++ QL+G
Sbjct:    4 QRPIVEKVLNLVVAVPAGLISRAATDLPTAVAGVRSRLENKVKVAHWIGEMAVTTGRQELERRFRPTPPQPATTNVAGQGHGVSGPSATAATLPSAS----VSRPP--FEGYDELAAAQIVQLLPRLPHADLRLIHDYEAAGRSRRTILHRIQQLVG 154          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A6I2XA88_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2XA88_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 5.310e-12
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   46 IERLIDLALFLPAGVAAQIRDDLPGLVRKGREQVQVARFFGEMAVTFGRNELIKRLEEAQAAAAIVVADTIPEAAPLVIVAMPPV----------------------PFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGSG 456
            IE L+DL ++ P G+  Q+ + LPGL+ +GR Q  +AR  GE AV  G  ++  + E AQ     ++   +  AA     A  PV                      P + Y+T  AA +V  L  L  D  A + ++E ATR RRTI+ ++ QL   G
Sbjct:   11 IESLLDLLVYAPLGLVTQLDELLPGLIERGRSQAVMARTIGEFAVRAGSEKVQGQAEGAQKQVESILRSLLDLAASRF--AAEPVEPADENVATTSSEQVHEESRVLPIEDYETRKAAEIVPMLSSLTPDQRAVIAEHEAATRKRRTILNRIQQLEADG 167          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A3C1CLM9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1CLM9_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 1.610e-11
Identity = 61/185 (32.97%), Postives = 80/185 (43.24%), Query Frame = 1
Query:   10 MPERTTPVDRPLIERLIDLALFLPAGVAAQIRDDLPGLVRKGRE----QVQVARFFGEMAVTFGRNELIKRLEEAQAAAAIVVADTIPEAAPLVIVAMPP------------------VPFD------------GYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGSGAP 462
            M +  TP DR     L+DL +F PAG+A    ++ P LV KGR     QV  AR  G+ AV  GR ++   L   +         T P  A     + PP                   P D            GYD+L A+ VVQRL  L    L  +RD+E + R RRTI+ ++DQLL    P
Sbjct:    1 MSDHKTPGDR-----LLDLLVFGPAGLAITAVEEFPKLVEKGRHRVEGQVHTARLVGQFAVQMGRRQIESTLGGLKPGG-----PTEPPGAATA--SAPPXXXXXXXXXXXRXXXXXXAPSDNGALTSRVLGIPGYDSLSASQVVQRLGGLSQGELEAIRDHELSHRRRRTILNRVDQLLAGAGP 173          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A7V9DJM9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9DJM9_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 3.150e-10
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   55 LIDLALFLPAGVAAQIRDDLPGLVRKGREQVQ----VARFFGEMAVTFGRNELIKRLEEAQA---------AAAIVVAD-----TIPEAAPLVIVAMPPV------------PFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQL 444
            L +LA+F+P G+ A++R+ +P L+  GRE+V+    VAR  GEMAV  G  +L  R  +A           +A ++V D     T+ EA      A   V            P   Y++L A+ VV RL  L+   L  V  +E   R RRT++ K+DQL
Sbjct:    9 LAELAVFVPIGLVAELRETIPRLMESGRERVEGRIAVARVIGEMAVKAGAEQLRTRTVDAPPDPPSVPQGLSADVMVTDLEALSTVVEARATETAAGEQVDDSEESVDPEALPIADYESLAASQVVARLPALNTVELDQVAQFEQTNRRRRTVLGKIDQL 168          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A7Y1ZYB2_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZYB2_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 1.650e-9
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   46 IERLIDLALFLPAGVAAQIRDDLPGLVRKGREQVQVARFFGEMAVTFGRNELIKRLEEAQAA-----AAIVVADTIPEAAPLVIVAMPP---VPFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGSG 456
            ++RLI  A+ LP G+ A+  D+LP  V     +    R  G  A+     EL +    A  A     AA +   T  E  P   VA PP   +    YD LPAAH+V +L  L A     +  YE+A RNRRT++ +LDQL  +G
Sbjct:    9 LQRLIASAVVLPLGLGAKFVDELPTAVAAANSRADAIRAAGSAAIARAIAELQRLGGPAAPAPPPSGAAGLAPTTEIEVEP---VAHPPADALALPDYDQLPAAHIVGKLADLTAGERDDIEAYESAHRNRRTVLGRLDQLRVAG 150          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A7K1B8F0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B8F0_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 2.500e-5
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:  301 PFDGYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQL 444
            P   Y++L A HVV RLR +  D L  VR +E A RNRRTI+AK++QL
Sbjct:  147 PIAEYESLAAIHVVDRLRTMQRDELELVRRFEVAHRNRRTILAKIEQL 194          
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Match: A0A7W1I9E7_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1I9E7_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 2.590e-5
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:  310 GYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQL 444
            GYD+L A+ VVQRL  L +  L  VRDYE ATR RRTI+ K+ QL
Sbjct:  123 GYDSLAASQVVQRLGGLSSAELEAVRDYEAATRARRTILNKVGQL 167          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12359.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3C1L6J6_9ACTN2.500e-2748.03Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2B072_9ACTN9.900e-2341.43Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3EXV3_9ACTN1.810e-1736.94Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I2XA88_9ACTN5.310e-1232.08Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A3C1CLM9_9ACTN1.610e-1132.97Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7V9DJM9_9ACTN3.150e-1033.75Uncharacterized protein n=2 Tax=Acidimicrobiia bac... [more]
A0A7Y1ZYB2_9ACTN1.650e-935.86Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7K1B8F0_9ACTN2.500e-554.17Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7W1I9E7_9ACTN2.590e-560.00Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12359contigP-wetherbeei_contig12359:902..1366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size465
Hectar predicted targeting categoryother localisation
Exons1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185946.5842376-UTR-P-wetherbeei_contig12359:901..9101683185946.5842376-UTR-P-wetherbeei_contig12359:901..910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12359 902..910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185946.592215-CDS-P-wetherbeei_contig12359:910..13661683185946.592215-CDS-P-wetherbeei_contig12359:910..1366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12359 911..1366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12359.2.1prot_P-wetherbeei_contig12359.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12359 911..1366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12359.2.1

>prot_P-wetherbeei_contig12359.2.1 ID=prot_P-wetherbeei_contig12359.2.1|Name=mRNA_P-wetherbeei_contig12359.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MPERTTPVDRPLIERLIDLALFLPAGVAAQIRDDLPGLVRKGREQVQVAR
FFGEMAVTFGRNELIKRLEEAQAAAAIVVADTIPEAAPLVIVAMPPVPFD
GYDTLPAAHVVQRLRRLDADALAGVRDYETATRNRRTIIAKLDQLLGSGA
P*
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mRNA from alignment at P-wetherbeei_contig12359:902..1366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12359.2.1 ID=mRNA_P-wetherbeei_contig12359.2.1|Name=mRNA_P-wetherbeei_contig12359.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig12359:902..1366+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCTGCGATGCCCGAGCGGACGACGCCAGTTGATCGTCCGCTCATCGA GCGCCTGATCGACCTGGCGCTGTTCCTGCCGGCCGGTGTGGCCGCGCAGA TCCGCGACGATCTCCCGGGGTTGGTGCGCAAGGGTCGCGAGCAGGTCCAA GTGGCACGCTTCTTCGGCGAGATGGCCGTCACCTTCGGCCGCAACGAGCT GATCAAGCGGCTCGAGGAAGCCCAGGCGGCGGCCGCGATCGTCGTTGCCG ACACGATCCCTGAGGCGGCCCCGTTGGTGATCGTGGCGATGCCACCGGTG CCCTTCGACGGGTACGACACGTTGCCCGCCGCCCACGTGGTGCAGCGGCT GCGCCGCCTCGATGCGGACGCGTTGGCCGGGGTGCGCGACTACGAGACAG CGACGCGAAACCGGCGCACCATCATTGCCAAGCTCGACCAGCTGCTGGGC TCCGGCGCTCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12359:902..1366+

>mRNA_P-wetherbeei_contig12359.2.1 ID=mRNA_P-wetherbeei_contig12359.2.1|Name=mRNA_P-wetherbeei_contig12359.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig12359:902..1366+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGAGCGGACGACGCCAGTTGATCGTCCGCTCATCGAGCGCCTGAT
CGACCTGGCGCTGTTCCTGCCGGCCGGTGTGGCCGCGCAGATCCGCGACG
ATCTCCCGGGGTTGGTGCGCAAGGGTCGCGAGCAGGTCCAAGTGGCACGC
TTCTTCGGCGAGATGGCCGTCACCTTCGGCCGCAACGAGCTGATCAAGCG
GCTCGAGGAAGCCCAGGCGGCGGCCGCGATCGTCGTTGCCGACACGATCC
CTGAGGCGGCCCCGTTGGTGATCGTGGCGATGCCACCGGTGCCCTTCGAC
GGGTACGACACGTTGCCCGCCGCCCACGTGGTGCAGCGGCTGCGCCGCCT
CGATGCGGACGCGTTGGCCGGGGTGCGCGACTACGAGACAGCGACGCGAA
ACCGGCGCACCATCATTGCCAAGCTCGACCAGCTGCTGGGCTCCGGCGCT
CCGTGA
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