mRNA_P-wetherbeei_contig1231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1231.1.1
Unique NamemRNA_P-wetherbeei_contig1231.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: D7G5C5_ECTSI (DUF1394 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C5_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 4.800e-85
Identity = 158/307 (51.47%), Postives = 200/307 (65.15%), Query Frame = 2
Query:  116 MGNLLGI-YQDGYVGYNLSINMEVEEGVGE-------CPEDVVGGEDAELYADLCALVEAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAA---PVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVLHKHGGQTGEQL 1003
            MGNL+G+ ++DG+ GY +S+   V+EG           P+D    +D ELY  LC +VE    A+  +Q Y GCS +IR SMS+P++  +Q      L  N + IK F+ LA+ ++ LAPALL RLA L        I E P L     ++L+ VL+WDQ KMM PQVQNDFA YRR L ++  E  A      PV+DTDAN ISMFIAENVP+ V L+  TA TA     V  V+ATVANMCCGMVHR  ++++A +RKLLMAMT A VLYDRITD GVFV+ S +GVSKCIKVL++HGG TGEQL
Sbjct:    1 MGNLMGLLWRDGHAGYEISLPPLVDEGSERGQQRPKGSPKDGQERQDGELYLQLCLVVERCSDAIQSVQQYEGCSALIRQSMSAPKDTELQSAVTEALLPNVKKIKTFFDLARDVEQLAPALLGRLAGLG------SIVEAPLLACMLTELLQAVLEWDQIKMMRPQVQNDFATYRRYLSRLKREQEAGLLLELPVADTDANAISMFIAENVPMMVMLSKVTAKTAEEVPRVQNVIATVANMCCGMVHRRAHTNDATSRKLLMAMTSAAVLYDRITDSGVFVRRSHIGVSKCIKVLNRHGGATGEQL 301          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A835YT34_9STRA (DUF1394 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT34_9STRA)

HSP 1 Score: 154 bits (389), Expect = 6.560e-41
Identity = 107/251 (42.63%), Postives = 141/251 (56.18%), Query Frame = 2
Query:  281 ALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGT-----GIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMV--NEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATAD--TARRTDGVARVVATVANMCCGMVHRGI-YSSEAINRKLLMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVLHKHGGQTGEQL 1003
            AL  + +Y GC++VIR SMS+P + + QR AF  L  N + I   +A +Q               L    GG       + E   +   +  +     D     +   Q+QNDFA+Y+RL+P+MV  ++       VSD  A  ISMFIAEN+PLTV L+ A  D  TA RT   A ++A VAN+CCG V R   Y  +A  R+LL+ MT AVVLYDRIT +GVF +  GVGVS+CIKVL+KHGG  G QL
Sbjct:   41 ALEAVNAYTGCADVIRHSMSAPGDHSAQRAAFDALLPNVDRIASLHATSQASSS---------EKLVGYGGGEHFHFFAVEEMRGVCAPSYTLQRTHFDHYDRLVTLSQIQNDFAFYKRLMPRMVASSDYTLEQLTVSDRHAGTISMFIAENMPLTVALSTALRDNTTASRT---ANIIAQVANLCCGTVARADGYRQDATLRQLLLGMTSAVVLYDRITIEGVFARGGGVGVSRCIKVLNKHGGDAGLQL 279          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: W7TKW8_9STRA (DUF1394 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKW8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.090e-27
Identity = 87/272 (31.99%), Postives = 144/272 (52.94%), Query Frame = 2
Query:  179 EVEEGVGECPEDVVGGEDAELYADLCALVEAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAAT---ADTARRTDGVA---RVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVLHK 976
            +V    G  P D V GE  +L+  +  L++     +  ++ Y+  +E++RA+M +P N A+Q +AFA L  +   IK  +AL+  L    P LL  L      A    +    +L++  AD+L+  L +D  KM  P +QNDF+Y+RR L KM          V + +A +IS+FIA+ +P+TVT+  A     + +   D +    ++V  +AN+ C +  R     + + R  L  MT +VV+YDR+++ GVF + S V   KC+++L K
Sbjct:   31 DVTSTAGRTPTDDVQGE--KLHQIMKGLLQESVCCIRAVREYQDNTELLRAAMKAPSNEALQLQAFACLMPSVANIKRAHALSICLSQELPQLLSYL-----IARRNNLRRNHALMKVLADILDFSLSFDFEKMRKPSIQNDFSYFRRYLNKMAPRMPDGEVQVQEAEAGMISLFIAQGLPMTVTVEKALRSLGEVSGSPDSLCHALQLVGLLANVSCDLALRPGLGVD-LRRFALRVMTSSVVIYDRVSEAGVFTRRSPVRTRKCLRILRK 294          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A0H5QKK4_9EUKA (DUF1394 domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QKK4_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.790e-25
Identity = 72/232 (31.03%), Postives = 124/232 (53.45%), Query Frame = 2
Query:  284 LLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRIT-DQGVFVKASGVGVSKCIKVLHK 976
            L  L+ Y  C   IR ++S P   A + EAF  +  +A+ I+ F+  ++ +  ++  LL  LA        +        V+K   +L  VL +D+ KM+HP +QNDF+YYRR+L K  N+P      + D +A+ IS+++A+ +P+   +  A ++       V + +  + N+C  ++    + SE IN+ L   M GA++LYD I+ + G FVK SG+ + K I++  K
Sbjct:   48 LQSLERYDNCGTYIRKALSDPHPTA-EMEAFEAVKASADIIRSFFEYSKAVSNISRELLTLLA---TGDEKSAFCSHQLAVKKFCLLLAFVLRFDELKMLHPSIQNDFSYYRRVLAKHTNDPNVK---ILDEEASFISLYVAQPIPMMAAVVKAVSNLYLSNPSVPQSLQLICNVCVDLLESKRFESEDINQLLTRTMVGAIILYDHISLEGGAFVKKSGINIKKAIQLTIK 272          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A0G4IKW3_PLABS (DUF1394 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKW3_PLABS)

HSP 1 Score: 110 bits (275), Expect = 2.460e-24
Identity = 70/240 (29.17%), Postives = 129/240 (53.75%), Query Frame = 2
Query:  260 LVEAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRIT-DQGVFVKASGVGVSKCIKVLHK 976
            ++E     +  L++Y  C   IR ++S P N   ++EAF  +  N   I  F+  ++ +  +   LL+ LA                 V++   +L+ VL +D+ KM+ P +QNDF+YYRR+LPK  N+P      V D +A+ IS++IA+ +P+   LA +T+        V   +A +AN+C  ++    +++   N+ L+  M G++VL+D ++ + G FVK SG+ + + ++++ K
Sbjct:   41 ILERAPGVIAALEAYANCGAQIRKALSDP-NPKSEQEAFQAVKANVAIINMFFNFSKEVANMVRELLKTLA---TGQEKEAFCAHQFSVKQLGRLLDFVLRFDELKMLRPGIQNDFSYYRRVLPKHSNDPDLK---VRDEEASFISLYIAQPIPMMTALAKSTSSLYVSNPNVPAALALMANVCLELLKSKRFTTSETNQLLVRVMVGSIVLFDHVSLEGGAFVKKSGINIKQAVQLVVK 273          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A0P1AIT5_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIT5_PLAHL)

HSP 1 Score: 89.0 bits (219), Expect = 2.280e-16
Identity = 70/262 (26.72%), Postives = 123/262 (46.95%), Query Frame = 2
Query:  236 ELYADLCALVEAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLP----KMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVL--HKHGGQTGEQL 1003
            +L ++   ++   + AL++LQ Y GC ++I+ ++  P+N  ++ E    L+RN   ++ FY LA  ++ +  AL++ + +   T           L+ K A +++  + +D  K     +QND +++RR L     K+    + A AP+     N +S F+A++ P+   L  A      +      V A +AN  C  +              L AMTGA++LYD     G F   S V + +C+K L   KH G T E +
Sbjct:   61 DLASEADEVISQSKTALVRLQCYEGCLQLIQKTVREPKNENLKTELVNRLSRNITTLRVFYDLATDIETIFVALIQ-ICSQKATKKAAAY-----LIEKIASLVDFAVSFDSLKAKTSDIQNDLSHFRRFLAINAAKLNQLESLADAPL-----NAMSFFVADHCPMLKVLIRAIECAMAKEPAAVDVSAILANSRCACMTSSRPKDGRPMMNFLRAMTGAIILYDHTAVHGAFCSKSEVKIKRCVKELVQGKHNGATLELI 311          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A7S2WT86_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT86_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.580e-13
Identity = 73/248 (29.44%), Postives = 114/248 (45.97%), Query Frame = 2
Query:  251 LCALVEAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRITDQG---VFVKASGVGVSKCIKVLHKHGG 985
            L  L E   AA+ Q++ Y    E IR +++ P +  +   A   L  N   I+ +  LA+++      L ++          T   + PS       +   V  +DQAKMM P +QNDFA YRR++ K+  +    +   S T   ++SM+IA+ +P  VTL   +A         A  +A VAN CCGM+     S  +       AM  A+++YDR+   G   VF     V + KC+  + + GG
Sbjct:   47 LAELFENMEAAMKQIEGYEAKPEPIRQAINIPNDPEIALNAVKALLPNVNMIETWMDLAEKIASAVDDLTKKF------QNKTLEQDVPSAAA-LFKIFAFVWKFDQAKMMQPGIQNDFAGYRRVVSKVPADTPGLSMDESAT--GIVSMWIADMMP--VTLKVVSALNQALPHEAATTIAEVANCCCGMISG---SRTSNTEPYFHAMICAIIIYDRLLLHGGNSVFTSRD-VAIRKCLLTIRRSGG 279          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: UPI000523A963 (protein FAM49B-like n=1 Tax=Chaetura pelagica TaxID=8897 RepID=UPI000523A963)

HSP 1 Score: 62.0 bits (149), Expect = 1.220e-7
Identity = 43/157 (27.39%), Postives = 72/157 (45.86%), Query Frame = 2
Query:  518 SLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPK--MVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKLLM----AMTGAVVLYDRITDQGVFVKASGVGVSKCIKVL 970
            +L ++ A++L   L +D+ KM HP +QNDF+YYRR + +  + N        V         +  ++N  L +             +     ++T+A +C  M+    Y S   N + L+     M G ++LYD +   G F K S + +  CIKVL
Sbjct:   33 ALAKQFAEILHFTLSFDELKMTHPAIQNDFSYYRRTISRNRINNLQVRGQCCVPPLAQRWSPLGDSQNKTLPI-------------EDTTDCLSTMACVCRVMLETPEYRSRFTNTETLLFCMRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVL 176          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A662Y2N5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2N5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.980e-7
Identity = 50/196 (25.51%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  260 LVEAGRAALLQLQSYRGCSEVIRA------SMSSPRNMAVQREAFATLARNAEAIKGFYALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHR 829
            L+   + AL+++QSY GC ++I+       S+ +P +  ++ E  A LA N +  +  Y L+  ++ +  AL++ L+A   T    G      L+   +  +E  + +D  K   P +QND +++RR++  +    A     +SD   N +S F+A++ P+   L  A  +   +      V A +AN  C  + R
Sbjct:   28 LIGQAKNALVRMQSYDGCLQLIQKVCTSPFSICAPNDADLKAELVAKLAPNVDLTRALYELSIDIESIFSALIQ-LSAQKSTKKAAGF-----LMESISSFVEFAVCFDNIKSRKPDIQNDLSHFRRVV-AVSTLAANQLESLSDAPLNAMSFFVADHCPMLKMLIRAVENAMAKEPSAVDVAALLANSRCSSIKR 216          
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Match: A0A1V9ZMA0_9STRA (FAM49A-like isoform X2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMA0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-6
Identity = 46/173 (26.59%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  503 IGERPSLVRKTADVLELVLDWDQAKMMHPQVQNDFAYYRR-LLPKMVNEPAAAAAPVSDTDANVISMFIAENVPLTVTLAAATADTARRTDG----------VARVV------ATVANMCCGMVHRGIYSSEAINRKLLMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVL 970
            I + P L+R+ AD+    L +D  K   P VQND ++YRR L+P   N+  +    + ++ AN +S+F+AE++P+   LA A A    +++           + RV       AT   +   M    +  +E +    + AM  ++++ D    +G     S + ++KC++VL
Sbjct:   42 IDDHPELIRRVADICISALLFDSLKATQPGVQNDVSFYRRYLIPSTDNQVTS----IKESQANALSLFLAEHMPIVKGLARAVAAVCHQSEQGLSPSWPMSPMLRVQLYIPARATAPTILRAMTVPPLSPAEELY--CMRAMAASILVLDHALPKGALRARSAININKCLRVL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G5C5_ECTSI4.800e-8551.47DUF1394 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YT34_9STRA6.560e-4142.63DUF1394 domain-containing protein n=1 Tax=Tribonem... [more]
W7TKW8_9STRA1.090e-2731.99DUF1394 domain-containing protein n=1 Tax=Nannochl... [more]
A0A0H5QKK4_9EUKA1.790e-2531.03DUF1394 domain-containing protein n=2 Tax=Spongosp... [more]
A0A0G4IKW3_PLABS2.460e-2429.17DUF1394 domain-containing protein n=1 Tax=Plasmodi... [more]
A0A0P1AIT5_PLAHL2.280e-1626.72Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A7S2WT86_9STRA1.580e-1329.44Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
UPI000523A9631.220e-727.39protein FAM49B-like n=1 Tax=Chaetura pelagica TaxI... [more]
A0A662Y2N5_9STRA3.980e-725.51Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1V9ZMA0_9STRA1.540e-626.59FAM49A-like isoform X2 n=1 Tax=Achlya hypogyna Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1231contigP-wetherbeei_contig1231:3..2548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5C5
Preferred nameFAM49B
PFAMsDUF1394
Model size1004
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001817,GO:0001819,GO:0001910,GO:0001912,GO:0001914,GO:0001916,GO:0002576,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0022407,GO:0022409,GO:0023023,GO:0023025,GO:0023029,GO:0023030,GO:0030141,GO:0030155,GO:0031091,GO:0031093,GO:0031341,GO:0031343,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032649,GO:0032729,GO:0032940,GO:0034774,GO:0042287,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045785,GO:0046903,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060205,GO:0065007,GO:0070013,GO:0097708,GO:0099503,GO:0120025,GO:1903037,GO:1903039,GO:2000567,GO:2000568
Exons5
Evalue1.47e-86
EggNOG OGsKOG3951@1|root,KOG3951@2759|Eukaryota
Descriptionpositive regulation of memory T cell activation
Cds size888
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1231.1.1prot_P-wetherbeei_contig1231.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1231 3..2433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185945.0975108-CDS-P-wetherbeei_contig1231:2..591683185945.0975108-CDS-P-wetherbeei_contig1231:2..59Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1231 3..59 -
1683185945.1090293-CDS-P-wetherbeei_contig1231:371..4771683185945.1090293-CDS-P-wetherbeei_contig1231:371..477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1231 372..477 -
1683185945.1177995-CDS-P-wetherbeei_contig1231:956..12041683185945.1177995-CDS-P-wetherbeei_contig1231:956..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1231 957..1204 -
1683185945.1267405-CDS-P-wetherbeei_contig1231:1692..21051683185945.1267405-CDS-P-wetherbeei_contig1231:1692..2105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1231 1693..2105 -
1683185945.136033-CDS-P-wetherbeei_contig1231:2369..24331683185945.136033-CDS-P-wetherbeei_contig1231:2369..2433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1231 2370..2433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185945.1456146-UTR-P-wetherbeei_contig1231:2433..25481683185945.1456146-UTR-P-wetherbeei_contig1231:2433..2548Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1231 2434..2548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1231.1.1

>prot_P-wetherbeei_contig1231.1.1 ID=prot_P-wetherbeei_contig1231.1.1|Name=mRNA_P-wetherbeei_contig1231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=296bp
MGNLLGIYQDGYVGYNLSINMEVEEGVGECPEDVVGGEDAELYADLCALV
EAGRAALLQLQSYRGCSEVIRASMSSPRNMAVQREAFATLARNAEAIKGF
YALAQRLQGLAPALLRRLAALPVTAGGTGIGERPSLVRKTADVLELVLDW
DQAKMMHPQVQNDFAYYRRLLPKMVNEPAAAAAPVSDTDANVISMFIAEN
VPLTVTLAAATADTARRTDGVARVVATVANMCCGMVHRGIYSSEAINRKL
LMAMTGAVVLYDRITDQGVFVKASGVGVSKCIKVLHKHGGQTGEQL
back to top

mRNA from alignment at P-wetherbeei_contig1231:3..2548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1231.1.1 ID=mRNA_P-wetherbeei_contig1231.1.1|Name=mRNA_P-wetherbeei_contig1231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2546bp|location=Sequence derived from alignment at P-wetherbeei_contig1231:3..2548- (Phaeothamnion wetherbeei SAG_119_79)
GCATTGCCGCTAGGCCGCTTCGTGCAAATCTGCGTGACCTTGGGAGCCAC GGCGCTTTTGCTGGCTGGGCCGGGTGTGTGTTGGGAGCCACGGCGCGTTT GCTTGGCCTGGGGGAATGGGGAACTTGCTTGGCATCTACCAAGACGGCTA TGTTGGCTACAATCTCTCCATCAATATGGGTAAGATGGGTTTCTCCTGTC CACCGCGTCACGCCGCCTCAAAACATTTGCTAGATAACCCCGGAAAGCCT CAGCAATCCCCTCTGCCCAAAGGCCCCCCGCCCCAACCTAAACAGATTTC TCGCCCGCAAATCCCTTTACCCAGCGTGATTCGCTGTTTTTTTACCGCCT TCTTCGCCGCATTTGGAGTTTTCAGGCACACAATGCAAGTTCCTGTACCA AAATCCCGAAATTCATCCTCGGTTAACTTTTCGCTCCGCGCAGAGGTGGA GGAGGGCGTGGGCGAGTGCCCGGAGGACGTGGTGGGCGGTGAAGACGCGG AGCTCTACGCTGACCTGTGCGCGCTCGTGGAAGCGGGTCGGGCGGCGCTG CTGCAGCTGCAGTCGTACCGCGGCTGCTCCGAGGTGATCCGCGCATCCAT GTCGTCGCCACGCAACATGGCGGTGCAGCGGGAGGCGTTCGCGACACTGG CGCGCAACGCCGAGGCCATCAAGGGCTTCTATGCCCTAGCGCAGCGGCTC CAGGGGCTGGCGCCAGCGTTATTGCGGCGGCTGGCGGCGCTGCCCGTGAC GGCCGGCGGGACCGGCATCGGGGAGCGGCCGTCGCTGGTGCGGAAGACGG CGGACGTGCTGGAGCTCGTACTGGACTGGGACCAGGCCAAGATGATGCAC CCCCAGGTCAGAAATGAGAAGTGGTCCTTGCCTTTTTACATCCTTTTAGA ATTTCTCATCAAAACAGCTTCTAACAGTCTTGCCAATCTTCCGGTGGCAT CGCCTCCTTAAGCCGTGAGTGGTGGGTGCGACTTCGCAACATCGTACTCC CTTTTTGGGAAACTTCGATTACCTCTTGCAGTCACCTTGAACACACAGAG CCCTGTAATGTTCAGCGCATTTTCGTTTCAATCTGAAGGACTGCTTTCAT TGCTTTTTCCCCTATCAAAGATACGTTTGCTGTTCCTGGCATTGGATCGG CCCTGGCATGCTTCTTCCCTCTGCGGCTACTCTAGGCATGCTTCTTCTTC AGTTCTGGCTGTCTTTCCACTGTTCTCCGTCCCAAATGACACCGCCTCGC CATCAAATCTCTCTTCTCGTTCCTCTGCCCCCATCTTCCCCCACTCCTCA CCCTCCCATCCAAATCAAAAACCATAATCTACCTCCACCCACAGGTCCAG AACGACTTCGCGTACTACCGGCGGCTGCTGCCGAAGATGGTAAACGAGCC GGCGGCGGCGGCGGCCCCCGTGTCGGACACGGACGCCAATGTCATCTCCA TGTTCATCGCTGAGAACGTGCCGCTTACGGTGACGCTGGCGGCGGCCACC GCCGACACGGCGCGACGAACGGACGGCGTGGCGCGCGTCGTGGCCACCGT CGCGAATATGTGCTGCGGCATGGTGCACAGAGGAATTTACAGGTGAGTTT CAGCGTCTTCTCGGTCGCGTGTTTTCTAGGATCTGTGCAGAAGGGAGGAG GAGGATCATCTGTCTGCCTGCCTGGGAAGGAGGAGGACGGAGCGGGGTTG GGGTAATGACTGGGATGCGCGGTGCCGCCGACTCTGTGCTTTTTGGTCTG TGGGGAAGCACAGTCGGCTCTGCTTTCTGCGGCTCGCTCCGTTATTGTTA CAAGTTACTGCGCGGCGTTTGATCGTTGCCGTGATATTGCAACGCGTGCA TTTCGTGTGTGTGCACCGGCTGGTTGTCTATGCCTGACCTCCCCACCATT TCTCATCCCTCTATCCTGAACGCCACCGCACATCCTTCTTCCTTCCAGCG TTCTCCTGGGCACATTAGCTGGTTCCGCCTTGCGGCGAATCCCATTTTGC CTATCAGCACGCCCACCTCTCTGTCTTCTGCGTTTGTCTCTCCCAATTCT CTCCTGCCCCCGGAAAAGCAGCAGCGAGGCTATAAACCGAAAGCTGCTCA TGGCGATGACGGGCGCGGTGGTATTGTACGACAGAATTACAGATCAGGGG GTGTTTGTTAAGGCGTCGGGCGTAGGGGTGAGTTACTCGAGGTCGTTTCT CATGTGTTTGGTGGCTGGTCCGATTGATTTTCTGTAAACTCTCTTCATGG CCTCTTCTGTCTTTCTTGGTCTTTAAGAGCGGGATTGGGTTTCATTGGTG CCGGCTGAGAGTTCGAAACACGCTTCTGTGAATTGGGCTCCCTTTTCCTT TTCCCTTCGATGTTGGCCGTACGGGCATCCCAGCAGCAGACATTGGCCAA CTTCACTCATATTTCGTTCTCCCACATTTTGCTTTGCTTTTTATGGATGC CTCTTGGCGATTTGATGCTCCGCCGGCGCCTGTGCGCAGGTATCCAAGTG TATTAAGGTGCTGCACAAGCACGGGGGCCAGACGGGGGAGCAGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1231:3..2548-

>mRNA_P-wetherbeei_contig1231.1.1 ID=mRNA_P-wetherbeei_contig1231.1.1|Name=mRNA_P-wetherbeei_contig1231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=888bp|location=Sequence derived from alignment at P-wetherbeei_contig1231:3..2548- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGAACTTGCTTGGCATCTACCAAGACGGCTATGTTGGCTACAATCT
CTCCATCAATATGGAGGTGGAGGAGGGCGTGGGCGAGTGCCCGGAGGACG
TGGTGGGCGGTGAAGACGCGGAGCTCTACGCTGACCTGTGCGCGCTCGTG
GAAGCGGGTCGGGCGGCGCTGCTGCAGCTGCAGTCGTACCGCGGCTGCTC
CGAGGTGATCCGCGCATCCATGTCGTCGCCACGCAACATGGCGGTGCAGC
GGGAGGCGTTCGCGACACTGGCGCGCAACGCCGAGGCCATCAAGGGCTTC
TATGCCCTAGCGCAGCGGCTCCAGGGGCTGGCGCCAGCGTTATTGCGGCG
GCTGGCGGCGCTGCCCGTGACGGCCGGCGGGACCGGCATCGGGGAGCGGC
CGTCGCTGGTGCGGAAGACGGCGGACGTGCTGGAGCTCGTACTGGACTGG
GACCAGGCCAAGATGATGCACCCCCAGGTCCAGAACGACTTCGCGTACTA
CCGGCGGCTGCTGCCGAAGATGGTAAACGAGCCGGCGGCGGCGGCGGCCC
CCGTGTCGGACACGGACGCCAATGTCATCTCCATGTTCATCGCTGAGAAC
GTGCCGCTTACGGTGACGCTGGCGGCGGCCACCGCCGACACGGCGCGACG
AACGGACGGCGTGGCGCGCGTCGTGGCCACCGTCGCGAATATGTGCTGCG
GCATGGTGCACAGAGGAATTTACAGCAGCGAGGCTATAAACCGAAAGCTG
CTCATGGCGATGACGGGCGCGGTGGTATTGTACGACAGAATTACAGATCA
GGGGGTGTTTGTTAAGGCGTCGGGCGTAGGGGTATCCAAGTGTATTAAGG
TGCTGCACAAGCACGGGGGCCAGACGGGGGAGCAGCTC
back to top