mRNA_P-wetherbeei_contig12303.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12303.1.1
Unique NamemRNA_P-wetherbeei_contig12303.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12303.1.1 vs. uniprot
Match: E8Z6K5_PFIPI (Glutathione S-transferase (Fragment) n=1 Tax=Pfiesteria piscicida TaxID=71001 RepID=E8Z6K5_PFIPI)

HSP 1 Score: 58.2 bits (139), Expect = 6.050e-9
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 YPALRAWLDRIEARPAVQRGLKINSSSEGGIPEYHS 111
            Y  +RAW D+I ARPAV++GL+INSSS+ GI EYHS
Sbjct:  211 YKNVRAWFDKISARPAVEKGLRINSSSDNGIREYHS 246
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BLAST of mRNA_P-wetherbeei_contig12303.1.1 vs. uniprot
Match: A0A0G4GYH4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GYH4_9ALVE)

HSP 1 Score: 51.2 bits (121), Expect = 1.520e-7
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 TYPALRAWLDRIEARPAVQRGLKINSSSEGGIPEYHS 111
            +Y  L  W+DR+ +RPAV+RGL +NS S GGI E HS
Sbjct:   20 SYKNLNGWMDRVGSRPAVKRGLLVNSGSPGGIKERHS 56
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BLAST of mRNA_P-wetherbeei_contig12303.1.1 vs. uniprot
Match: A0A7S3PBB9_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3PBB9_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.580e-5
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 1 
Query:    4 YPALRAWLDRIEARPAVQRGLKINSSSEGGIPEYHSK 114
            Y  +  W++ IE RPAV+RGLK+N   E  +PE HSK
Sbjct:  258 YENVIRWIENIEERPAVKRGLKVNGWGENDLPERHSK 294
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
E8Z6K5_PFIPI6.050e-966.67Glutathione S-transferase (Fragment) n=1 Tax=Pfies... [more]
A0A0G4GYH4_9ALVE1.520e-756.76Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3PBB9_9STRA7.580e-551.35Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12303contigP-wetherbeei_contig12303:751..867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1301098.PKB_3054
Preferred nameyghU
PFAMsGST_C,GST_C_2,GST_N
Model size117
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K11209
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.32e-05
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria
DescriptionBelongs to the GST superfamily
Cds size117
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185944.9450684-CDS-P-wetherbeei_contig12303:750..8671683185944.9450684-CDS-P-wetherbeei_contig12303:750..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12303 751..867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12303.1.1prot_P-wetherbeei_contig12303.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12303 751..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12303.1.1

>prot_P-wetherbeei_contig12303.1.1 ID=prot_P-wetherbeei_contig12303.1.1|Name=mRNA_P-wetherbeei_contig12303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
TYPALRAWLDRIEARPAVQRGLKINSSSEGGIPEYHSK*
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mRNA from alignment at P-wetherbeei_contig12303:751..867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12303.1.1 ID=mRNA_P-wetherbeei_contig12303.1.1|Name=mRNA_P-wetherbeei_contig12303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig12303:751..867+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTACCCGGCGCTGCGGGCATGGCTGGACCGGATCGAGGCGCGGCCGGC
GGTCCAGAGGGGCCTTAAGATAAATAGCAGCTCCGAGGGTGGCATTCCGG
AGTATCACTCGAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12303:751..867+

>mRNA_P-wetherbeei_contig12303.1.1 ID=mRNA_P-wetherbeei_contig12303.1.1|Name=mRNA_P-wetherbeei_contig12303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig12303:751..867+ (Phaeothamnion wetherbeei SAG_119_79)
ACGTACCCGGCGCTGCGGGCATGGCTGGACCGGATCGAGGCGCGGCCGGC
GGTCCAGAGGGGCCTTAAGATAAATAGCAGCTCCGAGGGTGGCATTCCGG
AGTATCACTCGAAGTGA
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