mRNA_P-wetherbeei_contig12280.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12280.1.1
Unique NamemRNA_P-wetherbeei_contig12280.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12280.1.1 vs. uniprot
Match: A0A1E4G0B2_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4G0B2_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 7.630e-13
Identity = 76/233 (32.62%), Postives = 113/233 (48.50%), Query Frame = 1 
Query:    1 RRRGMSLLEAVLSAALFCVVFFVTFNLFDLGSYNFHVGLLRHGLQSETRTSWSYLERDLRQTVLSGMSLDDGAARNVTVPIQRTSVTVPRQIVSLPSLSNWAPNTSTFDPDSGLPKWDRYIVYQATLDAPDGAFYRFELAPTGGDASAPFVNFAALSNVTLAAGPALIGPVSGGSITGR--RKLASGVLNFSVSITTTVNAYLKLRGKAHSEASQSEREETFEVNVTIAPNNS 693
            RRRG +LLEAVLS A+   +  V F +F +G   F VG  R  LQS+ R   + L +DL  +    MS         +  ++  S+   R  + L  L + A + S++   SGLP+WD +++Y AT D P+G   R  L  T      P V   +L     AA  +L  P     + GR  R L+  +L+F V +  + N  ++L  K  S+A +S R E  E+   I P N+
Sbjct:    2 RRRGFTLLEAVLSLAVLGSLMLVIFAVFSVGVAGFRVGTSRLQLQSDLRRVLAPLRKDLENSSFQSMS---------STALEIPSLPARRDGLCLNGLRD-ALSDSSYAAGSGLPQWDCFVLYFATQDLPEGRLVRLLLRDT-----TPSV--LSLPRSLTAADLSLANP----DLIGREIRVLSDLILDFRVRLDPS-NQMIQLGLKLRSKAGKS-RVEVLEIETIIDPANT 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E4G0B2_9BACT7.630e-1332.62Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12280contigP-wetherbeei_contig12280:1237..1938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categorysignal anchor
Exons1
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.967373-CDS-P-wetherbeei_contig12280:1236..19261683185943.967373-CDS-P-wetherbeei_contig12280:1236..1926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12280 1237..1926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.9768295-UTR-P-wetherbeei_contig12280:1926..19381683185943.9768295-UTR-P-wetherbeei_contig12280:1926..1938Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12280 1927..1938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12280.1.1prot_P-wetherbeei_contig12280.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12280 1237..1926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12280.1.1

>prot_P-wetherbeei_contig12280.1.1 ID=prot_P-wetherbeei_contig12280.1.1|Name=mRNA_P-wetherbeei_contig12280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MSLLEAVLSAALFCVVFFVTFNLFDLGSYNFHVGLLRHGLQSETRTSWSY
LERDLRQTVLSGMSLDDGAARNVTVPIQRTSVTVPRQIVSLPSLSNWAPN
TSTFDPDSGLPKWDRYIVYQATLDAPDGAFYRFELAPTGGDASAPFVNFA
ALSNVTLAAGPALIGPVSGGSITGRRKLASGVLNFSVSITTTVNAYLKLR
GKAHSEASQSEREETFEVNVTIAPNNSIQ*
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mRNA from alignment at P-wetherbeei_contig12280:1237..1938-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12280.1.1 ID=mRNA_P-wetherbeei_contig12280.1.1|Name=mRNA_P-wetherbeei_contig12280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig12280:1237..1938- (Phaeothamnion wetherbeei SAG_119_79)
CGTCGACGCGGCATGTCTCTCCTGGAAGCCGTTCTGAGCGCGGCCCTGTT
TTGCGTCGTATTTTTCGTGACCTTTAACCTGTTCGACCTCGGGAGCTACA
ACTTCCATGTGGGGCTTTTGCGCCATGGGCTGCAGAGCGAGACCCGCACT
TCCTGGTCCTACCTCGAGCGCGATCTGCGTCAAACCGTGCTCAGTGGAAT
GAGCCTCGACGACGGAGCAGCCCGCAACGTTACGGTCCCTATCCAGAGAA
CAAGCGTCACGGTGCCTCGCCAGATCGTCTCGCTCCCGTCGCTCTCCAAT
TGGGCACCCAACACCAGCACGTTCGACCCCGATTCGGGATTGCCCAAATG
GGACCGCTACATCGTCTATCAGGCCACCCTGGATGCCCCTGACGGCGCCT
TCTACCGCTTCGAACTCGCCCCTACGGGCGGGGATGCCTCGGCGCCCTTT
GTCAACTTCGCGGCTCTGAGTAACGTCACGCTAGCCGCAGGACCTGCGCT
TATCGGTCCGGTAAGCGGCGGATCCATCACCGGGCGAAGAAAACTCGCCA
GCGGAGTGTTAAACTTTAGCGTATCGATAACCACCACAGTCAATGCTTAT
TTGAAGCTCCGGGGTAAAGCTCACTCGGAGGCCTCGCAATCGGAGCGCGA
GGAAACTTTTGAGGTCAACGTGACCATCGCTCCTAATAATTCCATCCAGT
GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12280:1237..1938-

>mRNA_P-wetherbeei_contig12280.1.1 ID=mRNA_P-wetherbeei_contig12280.1.1|Name=mRNA_P-wetherbeei_contig12280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig12280:1237..1938- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCTCCTGGAAGCCGTTCTGAGCGCGGCCCTGTTTTGCGTCGTATT
TTTCGTGACCTTTAACCTGTTCGACCTCGGGAGCTACAACTTCCATGTGG
GGCTTTTGCGCCATGGGCTGCAGAGCGAGACCCGCACTTCCTGGTCCTAC
CTCGAGCGCGATCTGCGTCAAACCGTGCTCAGTGGAATGAGCCTCGACGA
CGGAGCAGCCCGCAACGTTACGGTCCCTATCCAGAGAACAAGCGTCACGG
TGCCTCGCCAGATCGTCTCGCTCCCGTCGCTCTCCAATTGGGCACCCAAC
ACCAGCACGTTCGACCCCGATTCGGGATTGCCCAAATGGGACCGCTACAT
CGTCTATCAGGCCACCCTGGATGCCCCTGACGGCGCCTTCTACCGCTTCG
AACTCGCCCCTACGGGCGGGGATGCCTCGGCGCCCTTTGTCAACTTCGCG
GCTCTGAGTAACGTCACGCTAGCCGCAGGACCTGCGCTTATCGGTCCGGT
AAGCGGCGGATCCATCACCGGGCGAAGAAAACTCGCCAGCGGAGTGTTAA
ACTTTAGCGTATCGATAACCACCACAGTCAATGCTTATTTGAAGCTCCGG
GGTAAAGCTCACTCGGAGGCCTCGCAATCGGAGCGCGAGGAAACTTTTGA
GGTCAACGTGACCATCGCTCCTAATAATTCCATCCAGTGA
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